Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0004031

Physical Location & Seq

Genomic Coordinates Forward (+)

25415686 .. 25417330

Gene Structure 1645 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00304780.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 789 bp

ATGCTGCCTTACCAAAACCTTCAAGAAGCAGAAGAAGCCCATGGCAGAGCTCTCAGTGTTGCAGAGAAGCTATGGTTCCGATACTCGGCTCACAAACCAGATTACGTCCTTCACTACCATAACATCATCTTCCTCATGCTGTTCTACACTTTGGCTCCTCTGCCGTACGTGTTCATAGGACTCGGCTGGTTCAAGAACATGGACAAGTACAAGATTCAACCGAAGGTGAAGGACTCCTTCTCTAACATGTTCAAGTGCTATAAGAATGTCATGGGAAGCTTTCTTCTTGTTGTTGGCCCTCTGCAAGTGATTTCATACCCCACCATCCAGGATTTCGGAAATTATTGGATCCATCGACTACTCCACTCAAAATGGGGCTACGACAAGATCCACCGGATCCACCATGAATACGCTGCTCCGATTGGGCTTGCAGCACCATATGCCCATTGGGCCGAAATTTTGATCCTCGGCATTCCTGCATTTCTCGCCCCAGCATTGGTTCCCGGCCACATTGTTACATACTGGTACAACTTCCCTTGGAGTCCCTCAAAATACATCCCATTCTATGGAGGTGCAGAGTACCACGACTATCATCACTATGTTGGAGAACAAAGTCAGAGCAACTTTGCATCAGTGTTCACTTATTGCGATTACATATATGGAACTGACAAGGGGTATAGATATCGGAAGCAAGCCCTTGAGAAGTTGGCGAAGCTGAGACACGAGGATGAGGGCAGACGAGAAGACGAGCCGTATCACATTCCTGCCGAGGATCGGAAATCTCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000138 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005769 GO:0005794 GO:0005795 GO:0005802 GO:0007275 GO:0007568 GO:0008150 GO:0010150 GO:0012505 GO:0016417 GO:0016740 GO:0016746 GO:0016747 GO:0019222 GO:0019707 GO:0031323 GO:0031410 GO:0031982 GO:0031984 GO:0031985 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051239 GO:0065007 GO:0090693 GO:0097708 GO:0098791 GO:0099402 GO:0140096 GO:1900055 GO:2000024 GO:2000026 GO:2000377

KEGG Pathways

Metabolic & Signaling

ko00100 ko01100 ko01110 map00100 map01100 map01110

Pfam Domains

Protein Families

DHHC

Protein Analysis

262

Amino Acids

30.9

Weight (kDa)

8.28

Isoelectric Point (pI)

47.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FA_hydroxylase	PF04116	108 - 222	1.6e-17	Fatty acid hydroxylase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004031)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G12110 AT4G22755 AT4G22756
fragaria_vesca	FvH4_5g00810 FvH4_7g11850
malus_domestica	MD04G1078200.v1.1 MD07G1008300.v1.1
prunus_persica	Prupe.2G145100_v2.0.a1 Prupe.5G080500_v2.0.a1
pyrus_communis	pycom04g07020 pycom06g06280
rosa_chinensis	RchiOBHm_Chr1g0350531 RchiOBHm_Chr7g0201301
rosa_laevigata	RLG00000003681 RLG00000028478
rosa_multiflora	Rmu_co8478905.1_g000001 Rmu_sc0001723.1_g000002 Rmu_ssc0000083.1_g000025 Rmu_ssc0000365.1_g000001
rosa_roxburghii	Rroxscaffold_3G00255370 Rroxscaffold_4G00304780
rosa_rugosa	Rorug01G0211700 Rorug07G0062500
rosa_samantha	Rh1AG226500 Rh1BG194900 Rh1CG211300 Rh1DG223100 Rh7AG189800 Rh7BG192300 Rh7CG200600 Rh7DG194700
rosa_wichuraiana	Rw1G019560 Rw7G016660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	566
AclWI	GGATC	7 cut(s)	343, 356, 382, 391, 404, 457, 780
AcoI	YGGCCR	1 cut(s)	505
AcsI	RAATTY	1 cut(s)	456
AfaI	GTAC	4 cut(s)	167, 209, 527, 581
AfiI	CCNNNNNNNGG	4 cut(s)	85, 496, 566, 774
AflIII	ACRYGT	2 cut(s)	168, 246
AgsI	TTSAA	4 cut(s)	23, 193, 218, 253
AjnI	CCWGG	1 cut(s)	327
AluBI	AGCT	4 cut(s)	50, 70, 279, 715
AluI	AGCT	4 cut(s)	50, 70, 279, 715
Alw21I	GWGCWC	1 cut(s)	52
Alw26I	GTCTC	1 cut(s)	712
AlwI	GGATC	7 cut(s)	343, 356, 382, 391, 404, 457, 780
AoxI	GGCC	3 cut(s)	295, 450, 505
ApeKI	GCWGC	3 cut(s)	4, 413, 431
ApoI	RAATTY	1 cut(s)	456
AspS9I	GGNCC	2 cut(s)	296, 450
AsuC2I	CCSGG	1 cut(s)	504
AsuHPI	GGTGA	1 cut(s)	238
BamHI	GGATCC	2 cut(s)	348, 396
BanII	GRGCYC	1 cut(s)	52
BauI	CACGAG	1 cut(s)	722
BbsI	GAAGAC	1 cut(s)	750
Bbv12I	GWGCWC	1 cut(s)	52
BbvI	GCAGC	2 cut(s)	400, 443
BccI	CCATC	2 cut(s)	332, 360
BceAI	ACGGC	2 cut(s)	148, 736
BciT130I	CCWGG	1 cut(s)	329
BcnI	CCSGG	1 cut(s)	504
BcoDI	GTCTC	1 cut(s)	712
BglI	GCCNNNNNGGC	1 cut(s)	449
BisI	GCNGC	3 cut(s)	5, 414, 432
BlsI	GCNGC	3 cut(s)	6, 415, 433
Bme1390I	CCNGG	2 cut(s)	329, 504
BmgT120I	GGNCC	2 cut(s)	296, 450
BmiI	GGNNCC	5 cut(s)	77, 156, 350, 398, 501
BmrFI	CCNGG	2 cut(s)	329, 504
BmsI	GCATC	1 cut(s)	638
BpiI	GAAGAC	1 cut(s)	750
BpuEI	CTTGAG	1 cut(s)	719
BpuMI	CCSGG	1 cut(s)	504
BsaAI	YACGTR	1 cut(s)	169
BsaJI	CCNNGG	4 cut(s)	40, 466, 536, 768
BsaWI	WCCGGW	1 cut(s)	393
BsaXI	ACNNNNNCTCC	2 cut(s)	139, 169
Bsc4I	CCNNNNNNNGG	4 cut(s)	85, 496, 566, 774
Bse1I	ACTGG	1 cut(s)	527
BseBI	CCWGG	1 cut(s)	329
BseDI	CCNNGG	4 cut(s)	40, 466, 536, 768
BseGI	GGATG	3 cut(s)	324, 555, 733
BseLI	CCNNNNNNNGG	4 cut(s)	85, 496, 566, 774
BseMII	CTCAG	2 cut(s)	67, 707
BseNI	ACTGG	1 cut(s)	527
BseRI	GAGGAG	1 cut(s)	147
BseXI	GCAGC	2 cut(s)	400, 443
BseYI	CCCAGC	1 cut(s)	490
BsgI	GTGCAG	1 cut(s)	594
BshFI	GGCC	3 cut(s)	297, 452, 507
BsiHKAI	GWGCWC	1 cut(s)	52
BsiSI	CCGG	2 cut(s)	394, 504
BsiWI	CGTACG	1 cut(s)	165
BslFI	GGGAC	1 cut(s)	528
BslI	CCNNNNNNNGG	4 cut(s)	85, 496, 566, 774
BsmAI	GTCTC	1 cut(s)	712
BsmFI	GGGAC	1 cut(s)	528
BsmI	GAATGC	1 cut(s)	471
BsnI	GGCC	3 cut(s)	297, 452, 507
Bsp1286I	GDGCHC	1 cut(s)	52
Bsp143I	GATC	5 cut(s)	348, 387, 396, 462, 772
Bsp19I	CCATGG	1 cut(s)	40
BspANI	GGCC	3 cut(s)	297, 452, 507
BspCNI	CTCAG	2 cut(s)	66, 708
BspLI	GGNNCC	5 cut(s)	77, 156, 350, 398, 501
BspPI	GGATC	7 cut(s)	343, 356, 382, 391, 404, 457, 780
BsrI	ACTGG	1 cut(s)	527
BssECI	CCNNGG	4 cut(s)	40, 466, 536, 768
BssMI	GATC	5 cut(s)	348, 387, 396, 462, 772
BssSI	CACGAG	1 cut(s)	722
BssT1I	CCWWGG	2 cut(s)	40, 536
Bst2BI	CACGAG	1 cut(s)	722
Bst2UI	CCWGG	1 cut(s)	329
BstAPI	GCANNNNNTGC	1 cut(s)	440
BstBAI	YACGTR	1 cut(s)	169
BstC8I	GCNNGC	2 cut(s)	429, 693
BstDEI	CTNAG	3 cut(s)	53, 716, 783
BstDSI	CCRYGG	1 cut(s)	40
BstF5I	GGATG	3 cut(s)	324, 555, 733
BstKTI	GATC	5 cut(s)	351, 390, 399, 465, 775
BstMAI	GTCTC	1 cut(s)	712
BstMBI	GATC	5 cut(s)	348, 387, 396, 462, 772
BstMWI	GCNNNNNNNGC	4 cut(s)	35, 440, 449, 485
BstNI	CCWGG	1 cut(s)	329
BstNSI	RCATGY	1 cut(s)	250
BstSCI	CCNGG	2 cut(s)	327, 502
BstV1I	GCAGC	2 cut(s)	400, 443
BstV2I	GAAGAC	1 cut(s)	750
BstX2I	RGATCY	3 cut(s)	348, 387, 396
BstYI	RGATCY	3 cut(s)	348, 387, 396
BsuRI	GGCC	3 cut(s)	297, 452, 507
BtgI	CCRYGG	1 cut(s)	40
BtsCI	GGATG	3 cut(s)	324, 555, 733
BtsIMutI	CAGTG	2 cut(s)	61, 639
Cac8I	GCNNGC	2 cut(s)	429, 693
Cfr13I	GGNCC	2 cut(s)	296, 450
Csp6I	GTAC	4 cut(s)	166, 208, 526, 580
CviAII	CATG	6 cut(s)	41, 136, 199, 247, 271, 404
CviQI	GTAC	4 cut(s)	166, 208, 526, 580
DdeI	CTNAG	3 cut(s)	53, 716, 783
DpnI	GATC	5 cut(s)	350, 389, 398, 464, 774
DpnII	GATC	5 cut(s)	348, 387, 396, 462, 772
EaeI	YGGCCR	1 cut(s)	505
Ecl136II	GAGCTC	1 cut(s)	50
Eco130I	CCWWGG	2 cut(s)	40, 536
Eco24I	GRGCYC	1 cut(s)	52
Eco32I	GATATC	1 cut(s)	683
Eco53kI	GAGCTC	1 cut(s)	50
EcoICRI	GAGCTC	1 cut(s)	50
EcoRII	CCWGG	1 cut(s)	327
EcoRV	GATATC	1 cut(s)	683
EcoT14I	CCWWGG	2 cut(s)	40, 536
EcoT38I	GRGCYC	1 cut(s)	52
ErhI	CCWWGG	2 cut(s)	40, 536
FaeI	CATG	6 cut(s)	44, 139, 202, 250, 274, 407
FalI	AAGNNNNNCTT	2 cut(s)	221, 253
FaqI	GGGAC	1 cut(s)	528
FatI	CATG	6 cut(s)	40, 135, 198, 246, 270, 403
FauNDI	CATATG	1 cut(s)	439
Fnu4HI	GCNGC	3 cut(s)	5, 414, 432
FokI	GGATG	3 cut(s)	311, 542, 740
FriOI	GRGCYC	1 cut(s)	52
Fsp4HI	GCNGC	3 cut(s)	5, 414, 432
GluI	GCNGC	3 cut(s)	5, 414, 432
GsaI	CCCAGC	1 cut(s)	494
HaeIII	GGCC	3 cut(s)	297, 452, 507
HapII	CCGG	2 cut(s)	394, 504
Hin1II	CATG	6 cut(s)	44, 139, 202, 250, 274, 407
HindIII	AAGCTT	1 cut(s)	277
HinfI	GANTC	4 cut(s)	180, 214, 233, 541
HpaII	CCGG	2 cut(s)	394, 504
HphI	GGTGA	1 cut(s)	238
Hpy166II	GTNNAC	1 cut(s)	639
Hpy188I	TCNGA	6 cut(s)	80, 338, 420, 618, 687, 777
Hpy188III	TCNNGA	2 cut(s)	23, 193
Hpy8I	GTNNAC	1 cut(s)	639
HpyAV	CCTTC	5 cut(s)	29, 119, 217, 223, 247
HpyCH4IV	ACGT	2 cut(s)	105, 168
HpyCH4V	TGCA	6 cut(s)	62, 304, 431, 479, 575, 629
HpyF10VI	GCNNNNNNNGC	4 cut(s)	35, 440, 449, 485
HpyF3I	CTNAG	3 cut(s)	53, 716, 783
HpySE526I	ACGT	2 cut(s)	105, 168
Hsp92II	CATG	6 cut(s)	44, 139, 202, 250, 274, 407
Kzo9I	GATC	5 cut(s)	348, 387, 396, 462, 772
LmnI	GCTCC	2 cut(s)	160, 421
Lsp1109I	GCAGC	2 cut(s)	400, 443
LweI	GCATC	1 cut(s)	638
MaeII	ACGT	2 cut(s)	105, 168
MaeIII	GTNAC	1 cut(s)	514
MalI	GATC	5 cut(s)	350, 389, 398, 464, 774
MboI	GATC	5 cut(s)	348, 387, 396, 462, 772
MboII	GAAGA	4 cut(s)	44, 121, 275, 755
MflI	RGATCY	3 cut(s)	348, 387, 396
MhlI	GDGCHC	1 cut(s)	52
MluCI	AATT	2 cut(s)	340, 456
MlyI	GAGTC	3 cut(s)	174, 227, 550
MmeI	TCCRAC	1 cut(s)	583
MnlI	CCTC	9 cut(s)	143, 168, 309, 476, 556, 563, 718, 724, 763
MslI	CAYNNNNRTG	2 cut(s)	597, 726
MspI	CCGG	2 cut(s)	394, 504
MspR9I	CCNGG	2 cut(s)	329, 504
Mva1269I	GAATGC	1 cut(s)	471
MvaI	CCWGG	1 cut(s)	329
MwoI	GCNNNNNNNGC	4 cut(s)	35, 440, 449, 485
NciI	CCSGG	1 cut(s)	504
NcoI	CCATGG	1 cut(s)	40
NdeI	CATATG	1 cut(s)	439
NdeII	GATC	5 cut(s)	348, 387, 396, 462, 772
NlaIII	CATG	6 cut(s)	44, 139, 202, 250, 274, 407
NlaIV	GGNNCC	5 cut(s)	77, 156, 350, 398, 501
NmeAIII	GCCGAG	3 cut(s)	65, 162, 447
NspI	RCATGY	1 cut(s)	250
PciI	ACATGT	1 cut(s)	246
PctI	GAATGC	1 cut(s)	471
PfeI	GAWTC	1 cut(s)	214
Pfl23II	CGTACG	1 cut(s)	165
PflMI	CCANNNNNTGG	1 cut(s)	566
PfoI	TCCNGGA	1 cut(s)	327
PkrI	GCNGC	3 cut(s)	6, 415, 433
PleI	GAGTC	3 cut(s)	174, 227, 549
PpsI	GAGTC	3 cut(s)	174, 227, 549
Ppu21I	YACGTR	1 cut(s)	169
PscI	ACATGT	1 cut(s)	246
Psp124BI	GAGCTC	1 cut(s)	52
Psp6I	CCWGG	1 cut(s)	327
PspFI	CCCAGC	1 cut(s)	490
PspGI	CCWGG	1 cut(s)	327
PspLI	CGTACG	1 cut(s)	165
PspN4I	GGNNCC	5 cut(s)	77, 156, 350, 398, 501
PspPI	GGNCC	2 cut(s)	296, 450
PsuI	RGATCY	3 cut(s)	348, 387, 396
RsaI	GTAC	4 cut(s)	167, 209, 527, 581
RsaNI	GTAC	4 cut(s)	166, 208, 526, 580
RseI	CAYNNNNRTG	2 cut(s)	597, 726
SacI	GAGCTC	1 cut(s)	52
SatI	GCNGC	3 cut(s)	5, 414, 432
Sau3AI	GATC	5 cut(s)	348, 387, 396, 462, 772
Sau96I	GGNCC	2 cut(s)	296, 450
SchI	GAGTC	3 cut(s)	174, 227, 550
ScrFI	CCNGG	2 cut(s)	329, 504
SduI	GDGCHC	1 cut(s)	52
SetI	ASST	9 cut(s)	21, 52, 72, 108, 171, 228, 281, 574, 717
SfaNI	GCATC	1 cut(s)	638
SmiMI	CAYNNNNRTG	2 cut(s)	597, 726
SmlI	CTYRAG	1 cut(s)	698
SmoI	CTYRAG	1 cut(s)	698
Sse9I	AATT	2 cut(s)	340, 456
SstI	GAGCTC	1 cut(s)	52
StyD4I	CCNGG	2 cut(s)	327, 502
StyI	CCWWGG	2 cut(s)	40, 536
TaiI	ACGT	2 cut(s)	108, 171
TaqI	TCGA	1 cut(s)	355
TasI	AATT	2 cut(s)	340, 456
TatI	WGTACW	1 cut(s)	207
TfiI	GAWTC	1 cut(s)	214
TscAI	CASTG	2 cut(s)	61, 639
TseI	GCWGC	3 cut(s)	4, 413, 431
TspDTI	ATGAA	3 cut(s)	163, 303, 420
TspRI	CASTG	2 cut(s)	61, 639
Van91I	CCANNNNNTGG	1 cut(s)	566
XapI	RAATTY	1 cut(s)	456
XceI	RCATGY	1 cut(s)	250
XcmI	CCANNNNNNNNNTGG	1 cut(s)	444

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.