Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000365.1

Orthogroup ID

OG0004031

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 946

Gene Structure 946 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000365.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 653 bp

atgctgccgtaccagaccatctcggaggcggcctccgccctcggccggaacctcaccttcgccgagaccctgtggttcaactactccgcctccaagtccgactacatcctctactgccacaacattctcttcctcttcctcatcttctccgtcgtccctctccccctcgtcttcgtcgaggtcctccgatgggccgggttcgaccgctacaagatccagcccaaggtccgattgaccctccatgacatgctcaagtgctacaaggacgtcatgtggatgttcttctccatcgtcggccctctccagctcgtctcttacccttctattcagctgatagggattcgaacaggattgccattgccttctgggtgggagatggtttcccaattgttagtgtatttcttggttgaagattacaccaactactggatccacagatttctgcataacaaatgggggtatgacaagatccatcgtgtccatcacgaatacactgctccgattggatttgcggcgccatatgcgcactgggctgagattttgattctcgggatcccatcttttctcgggccagccatagcgcctggccacatgatcacattctggtcgtggatagcattgaggcaggttgaggccattgaaacacacagcgg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000254 GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006629 GO:0006694 GO:0008150 GO:0008152 GO:0008202 GO:0008610 GO:0009058 GO:0012505 GO:0016020 GO:0016125 GO:0016126 GO:0016491 GO:0016705 GO:0016709 GO:0031984 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0055114 GO:0071704 GO:0098827 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00100 ko01100 ko01110 map00100 map01100 map01110

Pfam Domains

Protein Families

DHHC FA_hydroxylase

Protein Analysis

218

Amino Acids

25.31

Weight (kDa)

7.16

Isoelectric Point (pI)

42.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004031)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G12110 AT4G22755 AT4G22756
fragaria_vesca	FvH4_5g00810 FvH4_7g11850
malus_domestica	MD04G1078200.v1.1 MD07G1008300.v1.1
prunus_persica	Prupe.2G145100_v2.0.a1 Prupe.5G080500_v2.0.a1
pyrus_communis	pycom04g07020 pycom06g06280
rosa_chinensis	RchiOBHm_Chr1g0350531 RchiOBHm_Chr7g0201301
rosa_laevigata	RLG00000003681 RLG00000028478
rosa_multiflora	Rmu_co8478905.1_g000001 Rmu_sc0001723.1_g000002 Rmu_ssc0000083.1_g000025 Rmu_ssc0000365.1_g000001
rosa_roxburghii	Rroxscaffold_3G00255370 Rroxscaffold_4G00304780
rosa_rugosa	Rorug01G0211700 Rorug07G0062500
rosa_samantha	Rh1AG226500 Rh1BG194900 Rh1CG211300 Rh1DG223100 Rh7AG189800 Rh7BG192300 Rh7CG200600 Rh7DG194700
rosa_wichuraiana	Rw1G019560 Rw7G016660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	270
Acc16I	TGCGCA	1 cut(s)	525
Acc36I	ACCTGC	1 cut(s)	616
AccB1I	GGYRCC	1 cut(s)	514
AccB7I	CCANNNNNTGG	1 cut(s)	426
AciI	CCGC	6 cut(s)	29, 36, 87, 205, 512, 651
AclWI	GGATC	6 cut(s)	208, 424, 437, 463, 547, 560
AcoI	YGGCCR	2 cut(s)	43, 586
AcyI	GRCGYC	2 cut(s)	267, 515
AfaI	GTAC	1 cut(s)	11
AfiI	CCNNNNNNNGG	4 cut(s)	45, 190, 223, 426
AgsI	TTSAA	3 cut(s)	79, 410, 641
AjnI	CCWGG	1 cut(s)	583
AluBI	AGCT	2 cut(s)	307, 331
AluI	AGCT	2 cut(s)	307, 331
Alw26I	GTCTC	2 cut(s)	59, 316
AlwI	GGATC	6 cut(s)	208, 424, 437, 463, 547, 560
Ama87I	CYCGRG	2 cut(s)	548, 566
AoxI	GGCC	7 cut(s)	30, 43, 192, 295, 569, 586, 633
ApeKI	GCWGC	1 cut(s)	4
AspLEI	GCGC	3 cut(s)	517, 526, 583
AspS9I	GGNCC	5 cut(s)	181, 192, 226, 296, 569
AsuC2I	CCSGG	1 cut(s)	196
AsuHPI	GGTGA	1 cut(s)	46
AsuII	TTCGAA	1 cut(s)	343
AvaI	CYCGRG	2 cut(s)	548, 566
AvaII	GGWCC	2 cut(s)	181, 226
BalI	TGGCCA	1 cut(s)	588
BamHI	GGATCC	2 cut(s)	429, 552
BanI	GGYRCC	1 cut(s)	514
BbsI	GAAGAC	1 cut(s)	163
BccI	CCATC	7 cut(s)	26, 183, 296, 370, 480, 489, 565
BcgI	CGANNNNNNTGC	2 cut(s)	476, 510
BciT130I	CCWGG	1 cut(s)	585
BclI	TGATCA	1 cut(s)	594
BcnI	CCSGG	1 cut(s)	196
BcoDI	GTCTC	2 cut(s)	59, 316
BfoI	RGCGCY	2 cut(s)	518, 584
BfuAI	ACCTGC	1 cut(s)	616
BisI	GCNGC	3 cut(s)	5, 30, 513
BlsI	GCNGC	3 cut(s)	6, 31, 514
Bme1390I	CCNGG	2 cut(s)	196, 585
Bme18I	GGWCC	2 cut(s)	181, 226
BmeT110I	CYCGRG	2 cut(s)	548, 566
BmgT120I	GGNCC	5 cut(s)	181, 192, 226, 296, 569
BmiI	GGNNCC	4 cut(s)	50, 431, 516, 554
BmrFI	CCNGG	2 cut(s)	196, 585
BmrI	ACTGGG	1 cut(s)	538
BmuI	ACTGGG	1 cut(s)	538
BpiI	GAAGAC	1 cut(s)	163
BplI	GAGNNNNNCTC	2 cut(s)	17, 49
BpmI	CTGGAG	1 cut(s)	287
Bpu14I	TTCGAA	1 cut(s)	343
BpuEI	CTTGAG	1 cut(s)	236
BpuMI	CCSGG	1 cut(s)	196
BsaHI	GRCGYC	2 cut(s)	267, 515
BsaI	GGTCTC	1 cut(s)	59
BsaJI	CCNNGG	2 cut(s)	40, 222
BsaXI	ACNNNNNCTCC	2 cut(s)	74, 104
Bsc4I	CCNNNNNNNGG	4 cut(s)	45, 190, 223, 426
Bse1I	ACTGG	2 cut(s)	431, 533
Bse3DI	GCAATG	1 cut(s)	356
BseBI	CCWGG	1 cut(s)	585
BseDI	CCNNGG	2 cut(s)	40, 222
BseGI	GGATG	2 cut(s)	105, 282
BseLI	CCNNNNNNNGG	4 cut(s)	45, 190, 223, 426
BseMI	GCAATG	1 cut(s)	356
BseMII	CTCAG	1 cut(s)	525
BseNI	ACTGG	2 cut(s)	431, 533
BseX3I	CGGCCG	1 cut(s)	43
Bsh1285I	CGRYCG	2 cut(s)	46, 205
BshFI	GGCC	7 cut(s)	32, 45, 194, 297, 571, 588, 635
BshNI	GGYRCC	1 cut(s)	514
BsiEI	CGRYCG	2 cut(s)	46, 205
BsiHKCI	CYCGRG	2 cut(s)	548, 566
BsiSI	CCGG	2 cut(s)	46, 195
BslFI	GGGAC	1 cut(s)	140
BslI	CCNNNNNNNGG	4 cut(s)	45, 190, 223, 426
BsmAI	GTCTC	2 cut(s)	59, 316
BsmBI	CGTCTC	1 cut(s)	316
BsmFI	GGGAC	1 cut(s)	140
BsnI	GGCC	7 cut(s)	32, 45, 194, 297, 571, 588, 635
Bso31I	GGTCTC	1 cut(s)	59
BsoBI	CYCGRG	2 cut(s)	548, 566
Bsp119I	TTCGAA	1 cut(s)	343
Bsp143I	GATC	5 cut(s)	213, 429, 468, 552, 594
BspACI	CCGC	6 cut(s)	29, 36, 87, 205, 512, 651
BspANI	GGCC	7 cut(s)	32, 45, 194, 297, 571, 588, 635
BspCNI	CTCAG	1 cut(s)	526
BspLI	GGNNCC	4 cut(s)	50, 431, 516, 554
BspMI	ACCTGC	1 cut(s)	616
BspPI	GGATC	6 cut(s)	208, 424, 437, 463, 547, 560
BspT104I	TTCGAA	1 cut(s)	343
BspT107I	GGYRCC	1 cut(s)	514
BspTNI	GGTCTC	1 cut(s)	59
BsrDI	GCAATG	1 cut(s)	356
BsrI	ACTGG	2 cut(s)	431, 533
BssECI	CCNNGG	2 cut(s)	40, 222
BssMI	GATC	5 cut(s)	213, 429, 468, 552, 594
BssNI	GRCGYC	2 cut(s)	267, 515
BssT1I	CCWWGG	1 cut(s)	222
Bst2UI	CCWGG	1 cut(s)	585
Bst6I	CTCTTC	2 cut(s)	134, 140
BstACI	GRCGYC	2 cut(s)	267, 515
BstBI	TTCGAA	1 cut(s)	343
BstC8I	GCNNGC	1 cut(s)	573
BstDEI	CTNAG	1 cut(s)	534
BstF5I	GGATG	2 cut(s)	105, 282
BstH2I	RGCGCY	2 cut(s)	518, 584
BstHHI	GCGC	3 cut(s)	517, 526, 583
BstKTI	GATC	5 cut(s)	216, 432, 471, 555, 597
BstMAI	GTCTC	2 cut(s)	59, 316
BstMBI	GATC	5 cut(s)	213, 429, 468, 552, 594
BstMCI	CGRYCG	2 cut(s)	46, 205
BstMWI	GCNNNNNNNGC	4 cut(s)	35, 521, 523, 530
BstNI	CCWGG	1 cut(s)	585
BstNSI	RCATGY	1 cut(s)	250
BstSCI	CCNGG	2 cut(s)	194, 583
BstV2I	GAAGAC	1 cut(s)	163
BstX2I	RGATCY	4 cut(s)	213, 429, 468, 552
BstYI	RGATCY	4 cut(s)	213, 429, 468, 552
BstZI	CGGCCG	1 cut(s)	43
BsuRI	GGCC	7 cut(s)	32, 45, 194, 297, 571, 588, 635
BtsCI	GGATG	2 cut(s)	105, 282
BtsI	GCAGTG	1 cut(s)	492
BtsIMutI	CAGTG	2 cut(s)	492, 526
BveI	ACCTGC	1 cut(s)	616
Cac8I	GCNNGC	1 cut(s)	573
CfoI	GCGC	3 cut(s)	517, 526, 583
Cfr13I	GGNCC	5 cut(s)	181, 192, 226, 296, 569
Csp6I	GTAC	1 cut(s)	10
CviAII	CATG	4 cut(s)	242, 247, 271, 592
CviQI	GTAC	1 cut(s)	10
DdeI	CTNAG	1 cut(s)	534
DinI	GGCGCC	1 cut(s)	516
DpnI	GATC	5 cut(s)	215, 431, 470, 554, 596
DpnII	GATC	5 cut(s)	213, 429, 468, 552, 594
EaeI	YGGCCR	2 cut(s)	43, 586
EagI	CGGCCG	1 cut(s)	43
Eam1104I	CTCTTC	2 cut(s)	134, 140
EarI	CTCTTC	2 cut(s)	134, 140
EciI	GGCGGA	2 cut(s)	25, 76
EclXI	CGGCCG	1 cut(s)	43
Eco130I	CCWWGG	1 cut(s)	222
Eco31I	GGTCTC	1 cut(s)	59
Eco47I	GGWCC	2 cut(s)	181, 226
Eco52I	CGGCCG	1 cut(s)	43
Eco88I	CYCGRG	2 cut(s)	548, 566
EcoO109I	RGGNCCY	1 cut(s)	181
EcoRII	CCWGG	1 cut(s)	583
EcoT14I	CCWWGG	1 cut(s)	222
EgeI	GGCGCC	1 cut(s)	516
EheI	GGCGCC	1 cut(s)	516
ErhI	CCWWGG	1 cut(s)	222
Esp3I	CGTCTC	1 cut(s)	316
FaeI	CATG	4 cut(s)	245, 250, 274, 595
FaiI	YATR	9 cut(s)	243, 248, 272, 447, 462, 520, 522, 578, 593
FaqI	GGGAC	1 cut(s)	140
FatI	CATG	4 cut(s)	241, 246, 270, 591
FauNDI	CATATG	1 cut(s)	520
FbaI	TGATCA	1 cut(s)	594
Fnu4HI	GCNGC	3 cut(s)	5, 30, 513
FokI	GGATG	2 cut(s)	92, 289
Fsp4HI	GCNGC	3 cut(s)	5, 30, 513
FspAI	RTGCGCAY	1 cut(s)	525
FspI	TGCGCA	1 cut(s)	525
GlaI	GCGC	3 cut(s)	516, 525, 582
GluI	GCNGC	3 cut(s)	5, 30, 513
GsuI	CTGGAG	1 cut(s)	287
HaeII	RGCGCY	2 cut(s)	518, 584
HaeIII	GGCC	7 cut(s)	32, 45, 194, 297, 571, 588, 635
HapII	CCGG	2 cut(s)	46, 195
HhaI	GCGC	3 cut(s)	517, 526, 583
Hin1I	GRCGYC	2 cut(s)	267, 515
Hin1II	CATG	4 cut(s)	245, 250, 274, 595
Hin6I	GCGC	3 cut(s)	515, 524, 581
HinP1I	GCGC	3 cut(s)	515, 524, 581
HinfI	GANTC	2 cut(s)	340, 544
HpaII	CCGG	2 cut(s)	46, 195
HphI	GGTGA	1 cut(s)	46
Hpy188I	TCNGA	5 cut(s)	25, 100, 188, 230, 501
Hpy188III	TCNNGA	2 cut(s)	485, 550
Hpy99I	CGWCG	3 cut(s)	155, 179, 296
HpyAV	CCTTC	3 cut(s)	67, 330, 372
HpyCH4IV	ACGT	1 cut(s)	267
HpyCH4V	TGCA	1 cut(s)	445
HpyF10VI	GCNNNNNNNGC	4 cut(s)	35, 521, 523, 530
HpyF3I	CTNAG	1 cut(s)	534
HpySE526I	ACGT	1 cut(s)	267
Hsp92I	GRCGYC	2 cut(s)	267, 515
Hsp92II	CATG	4 cut(s)	245, 250, 274, 595
HspAI	GCGC	3 cut(s)	515, 524, 581
KasI	GGCGCC	1 cut(s)	514
Ksp22I	TGATCA	1 cut(s)	594
Kzo9I	GATC	5 cut(s)	213, 429, 468, 552, 594
LmnI	GCTCC	1 cut(s)	502
MaeII	ACGT	1 cut(s)	267
MalI	GATC	5 cut(s)	215, 431, 470, 554, 596
MboI	GATC	5 cut(s)	213, 429, 468, 552, 594
MboII	GAAGA	6 cut(s)	121, 127, 136, 163, 274, 422
MfeI	CAATTG	1 cut(s)	386
MflI	RGATCY	4 cut(s)	213, 429, 468, 552
MlsI	TGGCCA	1 cut(s)	588
MluCI	AATT	1 cut(s)	386
MluNI	TGGCCA	1 cut(s)	588
Mly113I	GGCGCC	1 cut(s)	515
MmeI	TCCRAC	1 cut(s)	123
Mox20I	TGGCCA	1 cut(s)	588
MscI	TGGCCA	1 cut(s)	588
MslI	CAYNNNNRTG	1 cut(s)	275
Msp20I	TGGCCA	1 cut(s)	588
MspA1I	CMGCKG	2 cut(s)	331, 651
MspI	CCGG	2 cut(s)	46, 195
MspR9I	CCNGG	2 cut(s)	196, 585
MunI	CAATTG	1 cut(s)	386
MvaI	CCWGG	1 cut(s)	585
MwoI	GCNNNNNNNGC	4 cut(s)	35, 521, 523, 530
NarI	GGCGCC	1 cut(s)	515
NciI	CCSGG	1 cut(s)	196
NdeI	CATATG	1 cut(s)	520
NdeII	GATC	5 cut(s)	213, 429, 468, 552, 594
NlaIII	CATG	4 cut(s)	245, 250, 274, 595
NlaIV	GGNNCC	4 cut(s)	50, 431, 516, 554
NmeAIII	GCCGAG	2 cut(s)	21, 88
NsbI	TGCGCA	1 cut(s)	525
NspI	RCATGY	1 cut(s)	250
NspV	TTCGAA	1 cut(s)	343
PcsI	WCGNNNNNNNCGW	1 cut(s)	174
PfeI	GAWTC	2 cut(s)	340, 544
PflMI	CCANNNNNTGG	1 cut(s)	426
PkrI	GCNGC	3 cut(s)	6, 31, 514
PluTI	GGCGCC	1 cut(s)	518
PpuMI	RGGWCCY	1 cut(s)	181
Psp5II	RGGWCCY	1 cut(s)	181
Psp6I	CCWGG	1 cut(s)	583
PspGI	CCWGG	1 cut(s)	583
PspN4I	GGNNCC	4 cut(s)	50, 431, 516, 554
PspPI	GGNCC	5 cut(s)	181, 192, 226, 296, 569
PspPPI	RGGWCCY	1 cut(s)	181
PsuI	RGATCY	4 cut(s)	213, 429, 468, 552
PvuII	CAGCTG	1 cut(s)	331
RsaI	GTAC	1 cut(s)	11
RsaNI	GTAC	1 cut(s)	10
RseI	CAYNNNNRTG	1 cut(s)	275
SatI	GCNGC	3 cut(s)	5, 30, 513
Sau3AI	GATC	5 cut(s)	213, 429, 468, 552, 594
Sau96I	GGNCC	5 cut(s)	181, 192, 226, 296, 569
ScrFI	CCNGG	2 cut(s)	196, 585
SetI	ASST	8 cut(s)	54, 59, 183, 228, 270, 309, 333, 630
SfoI	GGCGCC	1 cut(s)	516
SfuI	TTCGAA	1 cut(s)	343
SinI	GGWCC	2 cut(s)	181, 226
SmiMI	CAYNNNNRTG	1 cut(s)	275
SmlI	CTYRAG	1 cut(s)	251
SmoI	CTYRAG	1 cut(s)	251
Sse9I	AATT	1 cut(s)	386
SsiI	CCGC	6 cut(s)	29, 36, 87, 205, 512, 651
SspDI	GGCGCC	1 cut(s)	514
StyD4I	CCNGG	2 cut(s)	194, 583
StyI	CCWWGG	1 cut(s)	222
TaiI	ACGT	1 cut(s)	270
TaqI	TCGA	3 cut(s)	177, 201, 343
TasI	AATT	1 cut(s)	386
TauI	GCSGC	2 cut(s)	32, 515
TfiI	GAWTC	2 cut(s)	340, 544
TscAI	CASTG	2 cut(s)	499, 533
TseI	GCWGC	1 cut(s)	4
TspGWI	ACGGA	1 cut(s)	139
TspRI	CASTG	2 cut(s)	499, 533
Van91I	CCANNNNNTGG	1 cut(s)	426
VpaK11BI	GGWCC	2 cut(s)	181, 226
XceI	RCATGY	1 cut(s)	250
XcmI	CCANNNNNNNNNTGG	1 cut(s)	525
ZraI	GACGTC	1 cut(s)	268

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.