Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0004031

Physical Location & Seq

Genomic Coordinates Reverse (-)

20192414 .. 20194657

Gene Structure 2244 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G145100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

ATGCTGCCTCATCAAAGCCTTGAAGAAGCAGAGGAAGCCCTTGGCAGAGCTCTAAGTGTTGCAGAGAAGCTATGGTTTCAATACTCAGCTCAGAAACCTGATTTCATCCTCCACTGCCATAACATTCTCTTCGTGATGTTGTTCTATACCTTAGCTCCTCTTCCGTTCGTGTTCATAGGGCTTGGCTGGTTCAAGAACATGGACAAGTTCAAGATTCAACCGAAAGTTAACGACTGTTTCTCTAACATGTTCAAGTGCTATAAACATGTCATGCGCACCTTTGTTCTTGTCGTTGGTCCTCTGCAAGTCATTTCATACCCCACCATCCAGTGGATAGGGATTCGGACGAGTTTGCCATTACCATCCTTGTCGGAAGTATTTTGGCAAATAGTGGTGTATTTTATTATAGAGGATTTTTCAAATTATTGGATCCACCGGATGCTCCATACAAAATGGGCCTACAAAAAGATCCATCGGGTCCACCACGAATACACTGCTCCAATTGGGCTTGCAGCACCATATGCCCATTGGGCCGAGATTTTGATTCTGGGCCTTCCATCATTTCTCGGCCCAGCATTGGTTCCGGGGCATATTGTCACGTACTGGTTGTGGTTCATTTTCCGGCAATTGGAGGCCATCGAGACTCATAGCGGGTACTTGTTACCTTGGACTCCAACAAAATACATCCCATTTTATGGTGGTGCAGAGTACCATGACTACCACCACTTTGTTGGGGAGCAGAGTAAAAGCAACTTTGCATCGATTTTCACTTATTGCGATTACATCTATGGAACCAATAAGGGATATCGGTCTCACAAACAAGTCCTTGAGAAGGTTAAAAGTCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00100 ko01100 ko01110 map00100 map01100 map01110

Pfam Domains

Protein Families

FA_hydroxylase

Protein Analysis

283

Amino Acids

33.12

Weight (kDa)

8.7

Isoelectric Point (pI)

39.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004031)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G12110 AT4G22755 AT4G22756
fragaria_vesca	FvH4_5g00810 FvH4_7g11850
malus_domestica	MD04G1078200.v1.1 MD07G1008300.v1.1
prunus_persica	Prupe.2G145100_v2.0.a1 Prupe.5G080500_v2.0.a1
pyrus_communis	pycom04g07020 pycom06g06280
rosa_chinensis	RchiOBHm_Chr1g0350531 RchiOBHm_Chr7g0201301
rosa_laevigata	RLG00000003681 RLG00000028478
rosa_multiflora	Rmu_co8478905.1_g000001 Rmu_sc0001723.1_g000002 Rmu_ssc0000083.1_g000025 Rmu_ssc0000365.1_g000001
rosa_roxburghii	Rroxscaffold_3G00255370 Rroxscaffold_4G00304780
rosa_rugosa	Rorug01G0211700 Rorug07G0062500
rosa_samantha	Rh1AG226500 Rh1BG194900 Rh1CG211300 Rh1DG223100 Rh7AG189800 Rh7BG192300 Rh7CG200600 Rh7DG194700
rosa_wichuraiana	Rw1G019560 Rw7G016660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	275
AccB7I	CCANNNNNTGG	2 cut(s)	330, 695
AciI	CCGC	1 cut(s)	651
AclWI	GGATC	3 cut(s)	424, 437, 463
AfaI	GTAC	3 cut(s)	602, 656, 710
AfiI	CCNNNNNNNGG	5 cut(s)	330, 577, 628, 695, 832
AflIII	ACRYGT	2 cut(s)	246, 265
AgsI	TTSAA	7 cut(s)	23, 80, 193, 211, 218, 253, 420
AluBI	AGCT	4 cut(s)	50, 70, 89, 155
AluI	AGCT	4 cut(s)	50, 70, 89, 155
Alw21I	GWGCWC	1 cut(s)	52
Alw26I	GTCTC	2 cut(s)	635, 816
AlwI	GGATC	3 cut(s)	424, 437, 463
AoxI	GGCC	5 cut(s)	456, 531, 550, 568, 633
ApeKI	GCWGC	2 cut(s)	4, 512
AspLEI	GCGC	1 cut(s)	276
AspS9I	GGNCC	6 cut(s)	296, 456, 478, 531, 550, 569
AsuC2I	CCSGG	1 cut(s)	585
AvaII	GGWCC	2 cut(s)	296, 478
BamHI	GGATCC	1 cut(s)	429
BanII	GRGCYC	1 cut(s)	52
Bbv12I	GWGCWC	1 cut(s)	52
BbvI	GCAGC	1 cut(s)	524
BccI	CCATC	5 cut(s)	332, 370, 480, 565, 644
BcgI	CGANNNNNNTGC	2 cut(s)	476, 510
BcnI	CCSGG	1 cut(s)	585
BcoDI	GTCTC	2 cut(s)	635, 816
BglI	GCCNNNNNGGC	1 cut(s)	530
BisI	GCNGC	2 cut(s)	5, 513
BlsI	GCNGC	2 cut(s)	6, 514
Bme1390I	CCNGG	1 cut(s)	585
Bme18I	GGWCC	2 cut(s)	296, 478
BmgT120I	GGNCC	6 cut(s)	296, 456, 478, 531, 550, 569
BmiI	GGNNCC	4 cut(s)	431, 479, 582, 793
BmrFI	CCNGG	1 cut(s)	585
BmsI	GCATC	2 cut(s)	429, 767
Bpu10I	CCTNAGC	1 cut(s)	151
BpuEI	CTTGAG	1 cut(s)	848
BpuMI	CCSGG	1 cut(s)	585
Bsa29I	ATCGAT	1 cut(s)	761
BsaAI	YACGTR	1 cut(s)	600
BsaI	GGTCTC	1 cut(s)	816
BsaJI	CCNNGG	3 cut(s)	40, 584, 665
BsaWI	WCCGGW	1 cut(s)	435
BsaXI	ACNNNNNCTCC	2 cut(s)	139, 169
Bsc4I	CCNNNNNNNGG	5 cut(s)	330, 577, 628, 695, 832
Bse1I	ACTGG	2 cut(s)	328, 608
BseCI	ATCGAT	1 cut(s)	761
BseDI	CCNNGG	3 cut(s)	40, 584, 665
BseGI	GGATG	5 cut(s)	105, 324, 362, 444, 684
BseLI	CCNNNNNNNGG	5 cut(s)	330, 577, 628, 695, 832
BseMII	CTCAG	2 cut(s)	99, 104
BseNI	ACTGG	2 cut(s)	328, 608
BseRI	GAGGAG	1 cut(s)	147
BseXI	GCAGC	1 cut(s)	524
BseYI	CCCAGC	1 cut(s)	571
BsgI	GTGCAG	1 cut(s)	723
BshFI	GGCC	5 cut(s)	458, 533, 552, 570, 635
BshVI	ATCGAT	1 cut(s)	761
BsiHKAI	GWGCWC	1 cut(s)	52
BsiSI	CCGG	3 cut(s)	436, 584, 622
BslI	CCNNNNNNNGG	5 cut(s)	330, 577, 628, 695, 832
BsmAI	GTCTC	2 cut(s)	635, 816
BsnI	GGCC	5 cut(s)	458, 533, 552, 570, 635
Bso31I	GGTCTC	1 cut(s)	816
Bsp1286I	GDGCHC	1 cut(s)	52
Bsp143I	GATC	2 cut(s)	429, 468
BspACI	CCGC	1 cut(s)	651
BspANI	GGCC	5 cut(s)	458, 533, 552, 570, 635
BspCNI	CTCAG	2 cut(s)	98, 103
BspDI	ATCGAT	1 cut(s)	761
BspLI	GGNNCC	4 cut(s)	431, 479, 582, 793
BspPI	GGATC	3 cut(s)	424, 437, 463
BspTNI	GGTCTC	1 cut(s)	816
BsrI	ACTGG	2 cut(s)	328, 608
BssECI	CCNNGG	3 cut(s)	40, 584, 665
BssMI	GATC	2 cut(s)	429, 468
BssT1I	CCWWGG	2 cut(s)	40, 665
Bst4CI	ACNGT	1 cut(s)	236
Bst6I	CTCTTC	2 cut(s)	134, 165
BstAPI	GCANNNNNTGC	1 cut(s)	521
BstBAI	YACGTR	1 cut(s)	600
BstC8I	GCNNGC	1 cut(s)	510
BstDEI	CTNAG	4 cut(s)	53, 85, 90, 151
BstENI	CCTNNNNNAGG	1 cut(s)	830
BstF5I	GGATG	5 cut(s)	105, 324, 362, 444, 684
BstHHI	GCGC	1 cut(s)	276
BstKTI	GATC	2 cut(s)	432, 471
BstMAI	GTCTC	2 cut(s)	635, 816
BstMBI	GATC	2 cut(s)	429, 468
BstMWI	GCNNNNNNNGC	3 cut(s)	35, 521, 530
BstNSI	RCATGY	2 cut(s)	250, 269
BstSCI	CCNGG	1 cut(s)	583
BstV1I	GCAGC	1 cut(s)	524
BstX2I	RGATCY	2 cut(s)	429, 468
BstXI	CCANNNNNNTGG	1 cut(s)	731
BstYI	RGATCY	2 cut(s)	429, 468
Bsu15I	ATCGAT	1 cut(s)	761
BsuRI	GGCC	5 cut(s)	458, 533, 552, 570, 635
BsuTUI	ATCGAT	1 cut(s)	761
BtsCI	GGATG	5 cut(s)	105, 324, 362, 444, 684
BtsI	GCAGTG	2 cut(s)	112, 492
BtsIMutI	CAGTG	3 cut(s)	112, 335, 492
Cac8I	GCNNGC	1 cut(s)	510
CfoI	GCGC	1 cut(s)	276
Cfr13I	GGNCC	6 cut(s)	296, 456, 478, 531, 550, 569
ClaI	ATCGAT	1 cut(s)	761
Csp6I	GTAC	3 cut(s)	601, 655, 709
CviAII	CATG	5 cut(s)	199, 247, 266, 271, 713
CviQI	GTAC	3 cut(s)	601, 655, 709
DdeI	CTNAG	4 cut(s)	53, 85, 90, 151
DpnI	GATC	2 cut(s)	431, 470
DpnII	GATC	2 cut(s)	429, 468
Eam1104I	CTCTTC	2 cut(s)	134, 165
EarI	CTCTTC	2 cut(s)	134, 165
Ecl136II	GAGCTC	1 cut(s)	50
Eco130I	CCWWGG	2 cut(s)	40, 665
Eco24I	GRGCYC	1 cut(s)	52
Eco31I	GGTCTC	1 cut(s)	816
Eco32I	GATATC	1 cut(s)	806
Eco47I	GGWCC	2 cut(s)	296, 478
Eco53kI	GAGCTC	1 cut(s)	50
EcoICRI	GAGCTC	1 cut(s)	50
EcoNI	CCTNNNNNAGG	1 cut(s)	830
EcoRV	GATATC	1 cut(s)	806
EcoT14I	CCWWGG	2 cut(s)	40, 665
EcoT38I	GRGCYC	1 cut(s)	52
ErhI	CCWWGG	2 cut(s)	40, 665
FaeI	CATG	5 cut(s)	202, 250, 269, 274, 716
FatI	CATG	5 cut(s)	198, 246, 265, 270, 712
FauI	CCCGC	1 cut(s)	644
FauNDI	CATATG	1 cut(s)	520
Fnu4HI	GCNGC	2 cut(s)	5, 513
FokI	GGATG	5 cut(s)	92, 311, 349, 451, 671
FriOI	GRGCYC	1 cut(s)	52
Fsp4HI	GCNGC	2 cut(s)	5, 513
FspAI	RTGCGCAY	1 cut(s)	275
FspI	TGCGCA	1 cut(s)	275
GlaI	GCGC	1 cut(s)	275
GluI	GCNGC	2 cut(s)	5, 513
GsaI	CCCAGC	1 cut(s)	575
HaeIII	GGCC	5 cut(s)	458, 533, 552, 570, 635
HapII	CCGG	3 cut(s)	436, 584, 622
HhaI	GCGC	1 cut(s)	276
Hin1II	CATG	5 cut(s)	202, 250, 269, 274, 716
Hin6I	GCGC	1 cut(s)	274
HinP1I	GCGC	1 cut(s)	274
HincII	GTYRAC	1 cut(s)	229
HindII	GTYRAC	1 cut(s)	229
HinfI	GANTC	5 cut(s)	214, 340, 544, 643, 670
HpaI	GTTAAC	1 cut(s)	229
HpaII	CCGG	3 cut(s)	436, 584, 622
Hpy166II	GTNNAC	2 cut(s)	229, 481
Hpy188I	TCNGA	3 cut(s)	93, 345, 373
Hpy188III	TCNNGA	4 cut(s)	133, 193, 211, 640
Hpy8I	GTNNAC	2 cut(s)	229, 481
HpyAV	CCTTC	2 cut(s)	563, 826
HpyCH4III	ACNGT	1 cut(s)	236
HpyCH4IV	ACGT	1 cut(s)	599
HpyCH4V	TGCA	5 cut(s)	62, 304, 512, 704, 758
HpyF10VI	GCNNNNNNNGC	3 cut(s)	35, 521, 530
HpyF3I	CTNAG	4 cut(s)	53, 85, 90, 151
HpySE526I	ACGT	1 cut(s)	599
Hsp92II	CATG	5 cut(s)	202, 250, 269, 274, 716
HspAI	GCGC	1 cut(s)	274
KspAI	GTTAAC	1 cut(s)	229
Kzo9I	GATC	2 cut(s)	429, 468
LmnI	GCTCC	4 cut(s)	160, 447, 502, 736
LpnPI	CCDG	9 cut(s)	111, 172, 341, 449, 533, 585, 589, 597, 635
Lsp1109I	GCAGC	1 cut(s)	524
LweI	GCATC	2 cut(s)	429, 767
MaeII	ACGT	1 cut(s)	599
MaeIII	GTNAC	2 cut(s)	595, 660
MalI	GATC	2 cut(s)	431, 470
MboI	GATC	2 cut(s)	429, 468
MboII	GAAGA	3 cut(s)	35, 121, 152
MfeI	CAATTG	2 cut(s)	501, 626
MflI	RGATCY	2 cut(s)	429, 468
MhlI	GDGCHC	1 cut(s)	52
MluCI	AATT	3 cut(s)	421, 501, 626
MlyI	GAGTC	2 cut(s)	637, 664
MmeI	TCCRAC	2 cut(s)	351, 698
MnlI	CCTC	7 cut(s)	18, 25, 119, 168, 309, 403, 625
MseI	TTAA	2 cut(s)	228, 837
MspI	CCGG	3 cut(s)	436, 584, 622
MspR9I	CCNGG	1 cut(s)	585
MunI	CAATTG	2 cut(s)	501, 626
MwoI	GCNNNNNNNGC	3 cut(s)	35, 521, 530
NciI	CCSGG	1 cut(s)	585
NdeI	CATATG	1 cut(s)	520
NdeII	GATC	2 cut(s)	429, 468
NlaIII	CATG	5 cut(s)	202, 250, 269, 274, 716
NlaIV	GGNNCC	4 cut(s)	431, 479, 582, 793
NmeAIII	GCCGAG	2 cut(s)	546, 559
NmuCI	GTSAC	1 cut(s)	595
NsbI	TGCGCA	1 cut(s)	275
NspI	RCATGY	2 cut(s)	250, 269
PciI	ACATGT	2 cut(s)	246, 265
PfeI	GAWTC	3 cut(s)	214, 340, 544
PflMI	CCANNNNNTGG	2 cut(s)	330, 695
PkrI	GCNGC	2 cut(s)	6, 514
PleI	GAGTC	2 cut(s)	637, 664
PpsI	GAGTC	2 cut(s)	637, 664
Ppu21I	YACGTR	1 cut(s)	600
PscI	ACATGT	2 cut(s)	246, 265
Psp124BI	GAGCTC	1 cut(s)	52
PspFI	CCCAGC	1 cut(s)	571
PspN4I	GGNNCC	4 cut(s)	431, 479, 582, 793
PspPI	GGNCC	6 cut(s)	296, 456, 478, 531, 550, 569
PsuI	RGATCY	2 cut(s)	429, 468
RsaI	GTAC	3 cut(s)	602, 656, 710
RsaNI	GTAC	3 cut(s)	601, 655, 709
SacI	GAGCTC	1 cut(s)	52
SaqAI	TTAA	2 cut(s)	228, 837
SatI	GCNGC	2 cut(s)	5, 513
Sau3AI	GATC	2 cut(s)	429, 468
Sau96I	GGNCC	6 cut(s)	296, 456, 478, 531, 550, 569
SchI	GAGTC	2 cut(s)	637, 664
ScrFI	CCNGG	1 cut(s)	585
SduI	GDGCHC	1 cut(s)	52
SfaNI	GCATC	2 cut(s)	429, 767
SinI	GGWCC	2 cut(s)	296, 478
SmlI	CTYRAG	1 cut(s)	827
SmoI	CTYRAG	1 cut(s)	827
Sse9I	AATT	3 cut(s)	421, 501, 626
SsiI	CCGC	1 cut(s)	651
SstI	GAGCTC	1 cut(s)	52
StyD4I	CCNGG	1 cut(s)	583
StyI	CCWWGG	2 cut(s)	40, 665
TaaI	ACNGT	1 cut(s)	236
TaiI	ACGT	1 cut(s)	602
TaqI	TCGA	2 cut(s)	639, 761
TaqII	GACCGA	1 cut(s)	798
TasI	AATT	3 cut(s)	421, 501, 626
TfiI	GAWTC	3 cut(s)	214, 340, 544
Tru1I	TTAA	2 cut(s)	228, 837
Tru9I	TTAA	2 cut(s)	228, 837
TscAI	CASTG	3 cut(s)	119, 335, 499
TseFI	GTSAC	1 cut(s)	595
TseI	GCWGC	2 cut(s)	4, 512
Tsp45I	GTSAC	1 cut(s)	595
TspDTI	ATGAA	4 cut(s)	94, 163, 303, 604
TspGWI	ACGGA	1 cut(s)	153
TspRI	CASTG	3 cut(s)	119, 335, 499
Van91I	CCANNNNNTGG	2 cut(s)	330, 695
VpaK11BI	GGWCC	2 cut(s)	296, 478
XagI	CCTNNNNNAGG	1 cut(s)	830
XceI	RCATGY	2 cut(s)	250, 269
XcmI	CCANNNNNNNNNTGG	2 cut(s)	525, 728

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.