Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004460

Physical Location & Seq

Genomic Coordinates Forward (+)

7441681 .. 7443775

Gene Structure 2095 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G12560.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1242 bp

ATGGCGACGATTCCAATGGATATCGTCAACGACATATTCCTCCGATTACCAGCAAAAACTCTAGTTCGTTGCCGTGCTCTCTCTAAGCCATGTTATCATCTAATCAACGATCCAGATTTCATCGAATCTCATCTTCATCGCGTTCTTCAAACCGGTGATCATCTCATGATTCTTCTCAGAGGAGCTCTTCGTCTCTACTCTGTAGATCTCGATTCACTTGATTCCGTCTCCGACGTTGAGCATCCGATGAAACGTGGTGGTCCGACCGAAGTTTTTGGTTCTTCCAACGGTTTAATCGGGTTATCGAATTCTCCAACTGATTTAGCGGTTTTTAATCCTTCGACTCGACAGATTCATCGATTACCTCCTTCGTCTATCGATCTCCCCGATGGTTCGAGTACTCGTGGTTACGTGTTTTACGGATTAGGTTATGATTCTGTTAGTGATGATTATAAAGTTGTGAGGATGGTTCAGTTTAAGATAGATTCAGAAGATGAACTTGGTTGTAGTTTTCCTTATGAGGTTAAAGTGTTTAGTTTGAAGAAGAATTCATGGAAGAGAATCGAATCAGTGGCGTCGTCGATTCAGCTTTTGTTTTACTTTTATTATCATCTCTTGTATCGTCGTGGTTATGGTGTTCTTGCTGGTAATAGTCTTCATTGGGTTTTACCTAGAAGACCTGGTTTGATTGCGTTTAATCTCATTGTTAGATTTGATCTTGCCTTGGAAGAGTTTGAGATTGTTCGGTTTCCTGAAGCGGTTGCGAATGGTAATGTTGATATTCAGATGGATATAGGTGTTTTAGATGGTTGTCTTTGCTTGATGTGTAACTATGATCAGAGTTATGTTGATGTTTGGATGATGAAAGAATACAATGTGAGGGATTCTTGGACTAAGGTTTTTACGGTTCAGAAACCGAAAAGTGTGAAGTCGTTTTCGTATATGAGACCTTTGGTTTATTCTAAGGATAAGAAAAAGGTTCTTTTGGAGCTTAATAATACAAAGCTAGTCTGGTTTGATTTAGAGAGTAAGAAGATGAGTACTCTTAGGATTAAGGATTGCCCTAGCTCGTATAGTGCGGAACTCGTTGTGAGTAGCCTTGTCTTGGGGTGTAAAGGAGATCTTAATAACATTAAGTATCGAAAAGAACAACAAGCTAAAGAAGCTAGAGAAGCTAAAATTATGCAGAACACTAAAAGGAGGGATGATTTCCTGTCCAAAGGATTCAAGCTGGTCTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009892 GO:0009894 GO:0009895 GO:0009987 GO:0010498 GO:0010605 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0031146 GO:0031347 GO:0031348 GO:0032446 GO:0036211 GO:0042176 GO:0042177 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044464 GO:0048519 GO:0048583 GO:0048585 GO:0050789 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051603 GO:0060255 GO:0065007 GO:0070647 GO:0071704 GO:0080090 GO:0080134 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBA_1

Protein Analysis

413

Amino Acids

47.26

Weight (kDa)

8.8

Isoelectric Point (pI)

38.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	4 - 40	2.1e-06	F-box domain
FBA_3	PF08268	77 - 357	3.8e-19	F-box associated beta propeller domain
FBA_1	PF07734	88 - 350	1.3e-20	F-box associated beta propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004460)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G12560 AT4G12560 AT4G12560 AT4G22390 AT4G22390
fragaria_vesca	FvH4_3g00900 FvH4_3g00900
malus_domestica	MD05G1358500.v1.1 MD10G1332600.v1.1
prunus_persica	Prupe.4G009600_v2.0.a1 Prupe.4G009600_v2.0.a1 Prupe.4G009600_v2.0.a1 Prupe.4G009600_v2.0.a1 Prupe.4G009600_v2.0.a1 Prupe.4G009600_v2.0.a1 Prupe.4G009600_v2.0.a1 Prupe.4G009600_v2.0.a1 Prupe.4G009600_v2.0.a1
pyrus_communis	pycom05g32420 pycom10g28200
rosa_chinensis	RchiOBHm_Chr5g0001381
rosa_laevigata	RLG00000030926
rosa_multiflora	Rmu_sc0001706.1_g000001 Rmu_sc0003749.1_g000016 Rmu_sc0016478.1_g000001
rosa_roxburghii	Rroxscaffold_1G00074980
rosa_rugosa	Rorug04G0390300
rosa_samantha	Rh5AG010700 Rh5BG013400 Rh5CG011700 Rh5DG011100
rosa_wichuraiana	Rw5G001020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	453, 1240
AccII	CGCG	1 cut(s)	141
AciI	CCGC	3 cut(s)	326, 758, 1079
AclWI	GGATC	1 cut(s)	104
AcsI	RAATTY	2 cut(s)	307, 547
AcuI	CTGAAG	1 cut(s)	774
AcyI	GRCGYC	1 cut(s)	575
AfaI	GTAC	2 cut(s)	400, 1042
AfiI	CCNNNNNNNGG	1 cut(s)	1105
AflIII	ACRYGT	1 cut(s)	411
AgeI	ACCGGT	1 cut(s)	152
AgsI	TTSAA	3 cut(s)	149, 541, 1228
AjnI	CCWGG	1 cut(s)	679
AjuI	GAANNNNNNNTTGG	2 cut(s)	483, 515
AluBI	AGCT	9 cut(s)	185, 589, 991, 1006, 1068, 1157, 1166, 1175, 1231
AluI	AGCT	9 cut(s)	185, 589, 991, 1006, 1068, 1157, 1166, 1175, 1231
Alw21I	GWGCWC	2 cut(s)	79, 187
Alw26I	GTCTC	3 cut(s)	197, 232, 940
AlwI	GGATC	1 cut(s)	104
ApoI	RAATTY	2 cut(s)	307, 547
AsiGI	ACCGGT	1 cut(s)	152
AspS9I	GGNCC	1 cut(s)	260
AsuHPI	GGTGA	1 cut(s)	167
AvaII	GGWCC	1 cut(s)	260
BanII	GRGCYC	1 cut(s)	187
BauI	CACGAG	1 cut(s)	402
BbsI	GAAGAC	2 cut(s)	647, 682
Bbv12I	GWGCWC	2 cut(s)	79, 187
BccI	CCATC	4 cut(s)	383, 460, 781, 800
BceAI	ACGGC	1 cut(s)	57
BciT130I	CCWGG	1 cut(s)	681
BclI	TGATCA	2 cut(s)	157, 835
BcoDI	GTCTC	3 cut(s)	197, 232, 940
BfaI	CTAG	5 cut(s)	62, 672, 1007, 1065, 1167
BfmI	CTRYAG	1 cut(s)	201
BglII	AGATCT	2 cut(s)	205, 1120
BmcAI	AGTACT	2 cut(s)	400, 1042
Bme1390I	CCNGG	1 cut(s)	681
Bme18I	GGWCC	1 cut(s)	260
BmgT120I	GGNCC	1 cut(s)	260
BmrFI	CCNGG	1 cut(s)	681
BmsI	GCATC	1 cut(s)	250
BpiI	GAAGAC	2 cut(s)	647, 682
Bsa29I	ATCGAT	2 cut(s)	358, 378
BsaAI	YACGTR	1 cut(s)	412
BsaHI	GRCGYC	1 cut(s)	575
BsaI	GGTCTC	1 cut(s)	940
BsaJI	CCNNGG	1 cut(s)	723
BsaWI	WCCGGW	1 cut(s)	152
Bsc4I	CCNNNNNNNGG	1 cut(s)	1105
Bse118I	RCCGGY	1 cut(s)	152
BseBI	CCWGG	1 cut(s)	681
BseCI	ATCGAT	2 cut(s)	358, 378
BseDI	CCNNGG	1 cut(s)	723
BseGI	GGATG	4 cut(s)	241, 471, 864, 1210
BseLI	CCNNNNNNNGG	1 cut(s)	1105
BseMII	CTCAG	1 cut(s)	190
BseRI	GAGGAG	1 cut(s)	195
Bsh1236I	CGCG	1 cut(s)	141
Bsh1285I	CGRYCG	1 cut(s)	267
BshTI	ACCGGT	1 cut(s)	152
BshVI	ATCGAT	2 cut(s)	358, 378
BsiEI	CGRYCG	1 cut(s)	267
BsiHKAI	GWGCWC	2 cut(s)	79, 187
BsiSI	CCGG	1 cut(s)	153
BslI	CCNNNNNNNGG	1 cut(s)	1105
BsmAI	GTCTC	3 cut(s)	197, 232, 940
BsmBI	CGTCTC	2 cut(s)	197, 232
Bso31I	GGTCTC	1 cut(s)	940
Bsp1286I	GDGCHC	2 cut(s)	79, 187
Bsp143I	GATC	7 cut(s)	109, 157, 205, 379, 715, 835, 1120
BspACI	CCGC	3 cut(s)	326, 758, 1079
BspCNI	CTCAG	1 cut(s)	189
BspDI	ATCGAT	2 cut(s)	358, 378
BspFNI	CGCG	1 cut(s)	141
BspHI	TCATGA	1 cut(s)	165
BspPI	GGATC	1 cut(s)	104
BspQI	GCTCTTC	1 cut(s)	192
BspTNI	GGTCTC	1 cut(s)	940
BsrFI	RCCGGY	1 cut(s)	152
BssAI	RCCGGY	1 cut(s)	152
BssECI	CCNNGG	1 cut(s)	723
BssMI	GATC	7 cut(s)	109, 157, 205, 379, 715, 835, 1120
BssNI	GRCGYC	1 cut(s)	575
BssSI	CACGAG	1 cut(s)	402
BssT1I	CCWWGG	1 cut(s)	723
Bst2BI	CACGAG	1 cut(s)	402
Bst2UI	CCWGG	1 cut(s)	681
Bst4CI	ACNGT	2 cut(s)	290, 907
Bst6I	CTCTTC	3 cut(s)	192, 551, 723
BstACI	GRCGYC	1 cut(s)	575
BstBAI	YACGTR	1 cut(s)	412
BstDEI	CTNAG	5 cut(s)	84, 176, 894, 963, 1046
BstF5I	GGATG	4 cut(s)	241, 471, 864, 1210
BstFNI	CGCG	1 cut(s)	141
BstKTI	GATC	7 cut(s)	112, 160, 208, 382, 718, 838, 1123
BstMAI	GTCTC	3 cut(s)	197, 232, 940
BstMBI	GATC	7 cut(s)	109, 157, 205, 379, 715, 835, 1120
BstMCI	CGRYCG	1 cut(s)	267
BstMWI	GCNNNNNNNGC	2 cut(s)	1163, 1172
BstNI	CCWGG	1 cut(s)	681
BstSCI	CCNGG	1 cut(s)	679
BstSFI	CTRYAG	1 cut(s)	201
BstUI	CGCG	1 cut(s)	141
BstV2I	GAAGAC	2 cut(s)	647, 682
BstX2I	RGATCY	2 cut(s)	205, 1120
BstYI	RGATCY	2 cut(s)	205, 1120
Bsu15I	ATCGAT	2 cut(s)	358, 378
BsuTUI	ATCGAT	2 cut(s)	358, 378
BtgZI	GCGATG	1 cut(s)	122
BtsCI	GGATG	4 cut(s)	241, 471, 864, 1210
BtsIMutI	CAGTG	1 cut(s)	576
CciI	TCATGA	1 cut(s)	165
Cfr10I	RCCGGY	1 cut(s)	152
Cfr13I	GGNCC	1 cut(s)	260
ClaI	ATCGAT	2 cut(s)	358, 378
CseI	GACGC	1 cut(s)	564
CsiI	ACCWGGT	1 cut(s)	679
Csp6I	GTAC	2 cut(s)	399, 1041
CspAI	ACCGGT	1 cut(s)	152
CviAII	CATG	3 cut(s)	90, 166, 552
CviQI	GTAC	2 cut(s)	399, 1041
DdeI	CTNAG	5 cut(s)	84, 176, 894, 963, 1046
DpnI	GATC	7 cut(s)	111, 159, 207, 381, 717, 837, 1122
DpnII	GATC	7 cut(s)	109, 157, 205, 379, 715, 835, 1120
Eam1104I	CTCTTC	3 cut(s)	192, 551, 723
EarI	CTCTTC	3 cut(s)	192, 551, 723
Ecl136II	GAGCTC	1 cut(s)	185
Eco130I	CCWWGG	1 cut(s)	723
Eco24I	GRGCYC	1 cut(s)	187
Eco31I	GGTCTC	1 cut(s)	940
Eco32I	GATATC	1 cut(s)	22
Eco47I	GGWCC	1 cut(s)	260
Eco53kI	GAGCTC	1 cut(s)	185
Eco57I	CTGAAG	1 cut(s)	774
EcoICRI	GAGCTC	1 cut(s)	185
EcoRI	GAATTC	2 cut(s)	307, 547
EcoRII	CCWGG	1 cut(s)	679
EcoRV	GATATC	1 cut(s)	22
EcoT14I	CCWWGG	1 cut(s)	723
EcoT38I	GRGCYC	1 cut(s)	187
ErhI	CCWWGG	1 cut(s)	723
Esp3I	CGTCTC	2 cut(s)	197, 232
FaeI	CATG	3 cut(s)	93, 169, 555
FalI	AAGNNNNNCTT	5 cut(s)	483, 515, 1107, 1139, 1220
FatI	CATG	3 cut(s)	89, 165, 551
FbaI	TGATCA	2 cut(s)	157, 835
FokI	GGATG	4 cut(s)	228, 478, 871, 1217
FriOI	GRGCYC	1 cut(s)	187
FspBI	CTAG	5 cut(s)	62, 672, 1007, 1065, 1167
HapII	CCGG	1 cut(s)	153
HgaI	GACGC	1 cut(s)	564
Hin1I	GRCGYC	1 cut(s)	575
Hin1II	CATG	3 cut(s)	93, 169, 555
HincII	GTYRAC	1 cut(s)	28
HindII	GTYRAC	1 cut(s)	28
HpaII	CCGG	1 cut(s)	153
HphI	GGTGA	1 cut(s)	167
Hpy166II	GTNNAC	1 cut(s)	28
Hpy188I	TCNGA	9 cut(s)	44, 179, 232, 246, 264, 490, 786, 840, 912
Hpy188III	TCNNGA	4 cut(s)	113, 166, 209, 752
Hpy8I	GTNNAC	1 cut(s)	28
Hpy99I	CGWCG	5 cut(s)	10, 236, 580, 583, 627
HpyAV	CCTTC	2 cut(s)	348, 378
HpyCH4III	ACNGT	2 cut(s)	290, 907
HpyCH4IV	ACGT	3 cut(s)	234, 253, 411
HpyCH4V	TGCA	1 cut(s)	1186
HpyF10VI	GCNNNNNNNGC	2 cut(s)	1163, 1172
HpyF3I	CTNAG	5 cut(s)	84, 176, 894, 963, 1046
HpySE526I	ACGT	3 cut(s)	234, 253, 411
Hsp92I	GRCGYC	1 cut(s)	575
Hsp92II	CATG	3 cut(s)	93, 169, 555
Ksp22I	TGATCA	2 cut(s)	157, 835
Kzo9I	GATC	7 cut(s)	109, 157, 205, 379, 715, 835, 1120
LguI	GCTCTTC	1 cut(s)	192
LmnI	GCTCC	2 cut(s)	182, 988
LweI	GCATC	1 cut(s)	250
MabI	ACCWGGT	1 cut(s)	679
MaeI	CTAG	5 cut(s)	62, 672, 1007, 1065, 1167
MaeII	ACGT	3 cut(s)	234, 253, 411
MaeIII	GTNAC	2 cut(s)	407, 827
MalI	GATC	7 cut(s)	111, 159, 207, 381, 717, 837, 1122
MboI	GATC	7 cut(s)	109, 157, 205, 379, 715, 835, 1120
MflI	RGATCY	2 cut(s)	205, 1120
MhlI	GDGCHC	2 cut(s)	79, 187
MluCI	AATT	3 cut(s)	307, 547, 1179
MlyI	GAGTC	1 cut(s)	337
MmeI	TCCRAC	4 cut(s)	255, 287, 309, 338
MnlI	CCTC	7 cut(s)	50, 173, 375, 456, 514, 873, 1194
MseI	TTAA	9 cut(s)	293, 333, 477, 525, 696, 993, 1053, 1125, 1134
MspI	CCGG	1 cut(s)	153
MspR9I	CCNGG	1 cut(s)	681
MvaI	CCWGG	1 cut(s)	681
MvnI	CGCG	1 cut(s)	141
MwoI	GCNNNNNNNGC	2 cut(s)	1163, 1172
NdeII	GATC	7 cut(s)	109, 157, 205, 379, 715, 835, 1120
NlaIII	CATG	3 cut(s)	93, 169, 555
PagI	TCATGA	1 cut(s)	165
PciSI	GCTCTTC	1 cut(s)	192
PcsI	WCGNNNNNNNCGW	1 cut(s)	384
PinAI	ACCGGT	1 cut(s)	152
PleI	GAGTC	1 cut(s)	337
PpsI	GAGTC	1 cut(s)	337
Ppu21I	YACGTR	1 cut(s)	412
PsiI	TTATAA	2 cut(s)	453, 1240
Psp124BI	GAGCTC	1 cut(s)	187
Psp6I	CCWGG	1 cut(s)	679
PspGI	CCWGG	1 cut(s)	679
PspPI	GGNCC	1 cut(s)	260
PsuI	RGATCY	2 cut(s)	205, 1120
RsaI	GTAC	2 cut(s)	400, 1042
RsaNI	GTAC	2 cut(s)	399, 1041
SacI	GAGCTC	1 cut(s)	187
SapI	GCTCTTC	1 cut(s)	192
SaqAI	TTAA	9 cut(s)	293, 333, 477, 525, 696, 993, 1053, 1125, 1134
Sau3AI	GATC	7 cut(s)	109, 157, 205, 379, 715, 835, 1120
Sau96I	GGNCC	1 cut(s)	260
ScaI	AGTACT	2 cut(s)	400, 1042
SchI	GAGTC	1 cut(s)	337
ScrFI	CCNGG	1 cut(s)	681
SduI	GDGCHC	2 cut(s)	79, 187
SexAI	ACCWGGT	1 cut(s)	679
SfaNI	GCATC	1 cut(s)	250
SfcI	CTRYAG	1 cut(s)	201
SinI	GGWCC	1 cut(s)	260
Sse9I	AATT	3 cut(s)	307, 547, 1179
SsiI	CCGC	3 cut(s)	326, 758, 1079
SspMI	CTAG	5 cut(s)	62, 672, 1007, 1065, 1167
SstI	GAGCTC	1 cut(s)	187
StyD4I	CCNGG	1 cut(s)	679
StyI	CCWWGG	1 cut(s)	723
TaaI	ACNGT	2 cut(s)	290, 907
TaiI	ACGT	3 cut(s)	237, 256, 414
TaqII	GACCGA	1 cut(s)	281
TasI	AATT	3 cut(s)	307, 547, 1179
TatI	WGTACW	2 cut(s)	398, 1040
Tru1I	TTAA	9 cut(s)	293, 333, 477, 525, 696, 993, 1053, 1125, 1134
Tru9I	TTAA	9 cut(s)	293, 333, 477, 525, 696, 993, 1053, 1125, 1134
TscAI	CASTG	1 cut(s)	576
TspDTI	ATGAA	8 cut(s)	109, 125, 263, 344, 510, 540, 647, 878
TspGWI	ACGGA	2 cut(s)	214, 435
TspRI	CASTG	1 cut(s)	576
VpaK11BI	GGWCC	1 cut(s)	260
XapI	RAATTY	2 cut(s)	307, 547
XspI	CTAG	5 cut(s)	62, 672, 1007, 1065, 1167
ZrmI	AGTACT	2 cut(s)	400, 1042

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.