Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0004460

Physical Location & Seq

Genomic Coordinates Forward (+)

759966 .. 762495

Gene Structure 2530 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG011100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1224 bp

ATGAAATCTGCAGAAGAAAAATCCTCCACAGACGCCCAGCACCGCCAAATCCAAGCCTTCCTGGCCGAGCTCCCGCCGGAGGTAATCATCAACATCCTCTCACGCCTCCACGTCCGCCGCCTCCTCTGTTTCAGGTCCGTCGCCAGACCATGGCGGTCCCTAATCGACAGCTCCTACTTCAAAAACCTCCACCTCCTTCATTCCACTCAGACCAAATCCAATCTCACTCTTATCCTCCGTAAGGACTCCGACCTCTACTGCGTCGATTTCGATTCGCTAAACGACGGCGTCGAGCTCAATCACCCGCTCATGTGTTACAGCAACCGAATTAGGGTTCTGGGGTCCTGCAACGGCCTACTGTGCATCTGCAACGTGGCGGAGGACATCGCGTTGTGGAGTCCCTGGATTAAAAAGTACAGGATTCTGCCGTCTTTGCCGTCGGATCGAAAGAGGGACAAAGGTATGTGCTTGTGTGGCGCTAGGGTTTACGGGCTGGGATACGACGCCGTTCATGACGACTATAAATTGGTCAGGATTTCGCAGTTTATCGGATGGGACTATGCGTCGTTTGAGAGTGAGGTGAAAGTTTATAGCCTGAGAATGAATGCGTGGAGAAAGGTCGATGACATGCCATATGTGCTGTGTTACACGCGAAAAATGGGGATTCTTGTGAGTGGATCTGTGCATTGGGTGGTGACGCGGAGTCATGAAGTGGATCAACCCGCAACCGAGTTGGTTATTGGATTTGATATAATAAAGGAGAGATTTGGGGAGGTGCCGATGCCGGAGATGGACCGGAAGTGTCAGATTGATGTGGGGTATTTGGAAGGGTGTCTTTGCATTATAGCCAAGTATGAAGATGTGGGTGTTGATGTTTGGACTATCAAACAGTATGGGGTTAAGGAGACTTGGTGTAAATTGTTTACTGTGAAACAGGCTCAAGGGGTTAGAAGGCCTAAGAGTATTAAGCCTCTGGTTTATTCAAAGAATGGCCGGCAAGTTTTGCTGGAACAAAACCATGAAGATCTTGTTTGGTTTGACTTGGAAAGTCAGATGGTCAATAAAATTAAGATTCGCGGTTTGCCAGATTTATTTGAGGCTATAGTCTGTGCGGAAACCCTTGTTCCGGTTGATCCTAGTAAACGAGAAGACAAGGAAAAAGAGGGAAAAAAGAATAAGAAGAGGGATGATTTCCTAGCAGAAGGCTTCAAATCGGTGCTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBA_1

Protein Analysis

407

Amino Acids

46.94

Weight (kDa)

8.52

Isoelectric Point (pI)

37.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box-like	PF12937	22 - 59	1.5e-06	F-box-like
F-box	PF00646	23 - 61	2.3e-07	F-box domain
FBA_1	PF07734	79 - 359	5.5e-26	F-box associated beta propeller domain
FBA_3	PF08268	105 - 363	8.7e-18	F-box associated beta propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004460)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G12560 AT4G12560 AT4G12560 AT4G22390 AT4G22390
fragaria_vesca	FvH4_3g00900 FvH4_3g00900
malus_domestica	MD05G1358500.v1.1 MD10G1332600.v1.1
prunus_persica	Prupe.4G009600_v2.0.a1 Prupe.4G009600_v2.0.a1 Prupe.4G009600_v2.0.a1 Prupe.4G009600_v2.0.a1 Prupe.4G009600_v2.0.a1 Prupe.4G009600_v2.0.a1 Prupe.4G009600_v2.0.a1 Prupe.4G009600_v2.0.a1 Prupe.4G009600_v2.0.a1
pyrus_communis	pycom05g32420 pycom10g28200
rosa_chinensis	RchiOBHm_Chr5g0001381
rosa_laevigata	RLG00000030926
rosa_multiflora	Rmu_sc0001706.1_g000001 Rmu_sc0003749.1_g000016 Rmu_sc0016478.1_g000001
rosa_roxburghii	Rroxscaffold_1G00074980
rosa_rugosa	Rorug04G0390300
rosa_samantha	Rh5AG010700 Rh5BG013400 Rh5CG011700 Rh5DG011100
rosa_wichuraiana	Rw5G001020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	775
AccB7I	CCANNNNNTGG	1 cut(s)	150
AccBSI	CCGCTC	1 cut(s)	307
AccII	CGCG	4 cut(s)	389, 652, 700, 1077
AclWI	GGATC	4 cut(s)	450, 685, 723, 1127
AcoI	YGGCCR	2 cut(s)	63, 991
AcyI	GRCGYC	3 cut(s)	33, 288, 504
AfaI	GTAC	1 cut(s)	416
AfiI	CCNNNNNNNGG	5 cut(s)	79, 150, 241, 331, 1126
AgsI	TTSAA	3 cut(s)	181, 984, 1210
AhdI	GACNNNNNGTC	2 cut(s)	562, 702
AjiI	CACGTC	1 cut(s)	112
AjnI	CCWGG	2 cut(s)	60, 401
AluBI	AGCT	3 cut(s)	70, 171, 295
AluI	AGCT	3 cut(s)	70, 171, 295
Alw21I	GWGCWC	2 cut(s)	72, 297
Alw26I	GTCTC	1 cut(s)	899
AlwI	GGATC	4 cut(s)	450, 685, 723, 1127
AoxI	GGCC	4 cut(s)	63, 352, 953, 991
AspLEI	GCGC	1 cut(s)	479
AspS9I	GGNCC	4 cut(s)	135, 156, 342, 793
AsuHPI	GGTGA	3 cut(s)	293, 592, 706
AvaII	GGWCC	4 cut(s)	135, 156, 342, 793
BanI	GGYRCC	1 cut(s)	775
BanII	GRGCYC	2 cut(s)	72, 297
BbsI	GAAGAC	1 cut(s)	1155
Bbv12I	GWGCWC	2 cut(s)	72, 297
BccI	CCATC	3 cut(s)	546, 784, 1048
BceAI	ACGGC	5 cut(s)	301, 367, 412, 421, 491
BciT130I	CCWGG	2 cut(s)	62, 403
BciVI	GTATCC	1 cut(s)	491
BcoDI	GTCTC	1 cut(s)	899
BfaI	CTAG	3 cut(s)	480, 1137, 1196
BfmI	CTRYAG	2 cut(s)	9, 1101
BfoI	RGCGCY	1 cut(s)	480
BfuI	GTATCC	1 cut(s)	491
BglI	GCCNNNNNGGC	1 cut(s)	62
BglII	AGATCT	1 cut(s)	1024
BisI	GCNGC	1 cut(s)	118
BlsI	GCNGC	1 cut(s)	119
Bme1390I	CCNGG	2 cut(s)	62, 403
Bme18I	GGWCC	4 cut(s)	135, 156, 342, 793
BmeRI	GACNNNNNGTC	2 cut(s)	562, 702
BmgBI	CACGTC	1 cut(s)	112
BmgT120I	GGNCC	4 cut(s)	135, 156, 342, 793
BmiI	GGNNCC	3 cut(s)	158, 343, 777
BmrFI	CCNGG	2 cut(s)	62, 403
BmsI	GCATC	2 cut(s)	372, 771
BpiI	GAAGAC	1 cut(s)	1155
BpuEI	CTTGAG	1 cut(s)	924
BsaHI	GRCGYC	3 cut(s)	33, 288, 504
BsaJI	CCNNGG	2 cut(s)	149, 401
BsaWI	WCCGGW	2 cut(s)	795, 1126
BsaXI	ACNNNNNCTCC	2 cut(s)	896, 926
Bsc4I	CCNNNNNNNGG	5 cut(s)	79, 150, 241, 331, 1126
Bse118I	RCCGGY	1 cut(s)	993
BseBI	CCWGG	2 cut(s)	62, 403
BseDI	CCNNGG	2 cut(s)	149, 401
BseGI	GGATG	3 cut(s)	93, 557, 1192
BseLI	CCNNNNNNNGG	5 cut(s)	79, 150, 241, 331, 1126
BseMII	CTCAG	2 cut(s)	221, 587
BseRI	GAGGAG	1 cut(s)	113
BseYI	CCCAGC	2 cut(s)	36, 493
Bsh1236I	CGCG	4 cut(s)	389, 652, 700, 1077
BshFI	GGCC	4 cut(s)	65, 354, 955, 993
BshNI	GGYRCC	1 cut(s)	775
BsiHKAI	GWGCWC	2 cut(s)	72, 297
BsiSI	CCGG	5 cut(s)	77, 785, 796, 994, 1127
BslFI	GGGAC	4 cut(s)	142, 384, 467, 569
BslI	CCNNNNNNNGG	5 cut(s)	79, 150, 241, 331, 1126
BsmAI	GTCTC	1 cut(s)	899
BsmFI	GGGAC	4 cut(s)	142, 384, 467, 569
BsmI	GAATGC	1 cut(s)	610
BsnI	GGCC	4 cut(s)	65, 354, 955, 993
Bsp1286I	GDGCHC	2 cut(s)	72, 297
Bsp143I	GATC	5 cut(s)	442, 677, 715, 1024, 1132
Bsp19I	CCATGG	1 cut(s)	149
BspANI	GGCC	4 cut(s)	65, 354, 955, 993
BspCNI	CTCAG	2 cut(s)	220, 588
BspFNI	CGCG	4 cut(s)	389, 652, 700, 1077
BspHI	TCATGA	2 cut(s)	511, 706
BspLI	GGNNCC	3 cut(s)	158, 343, 777
BspMAI	CTGCAG	1 cut(s)	13
BspPI	GGATC	4 cut(s)	450, 685, 723, 1127
BspT107I	GGYRCC	1 cut(s)	775
BsrBI	CCGCTC	1 cut(s)	307
BsrFI	RCCGGY	1 cut(s)	993
BssAI	RCCGGY	1 cut(s)	993
BssECI	CCNNGG	2 cut(s)	149, 401
BssMI	GATC	5 cut(s)	442, 677, 715, 1024, 1132
BssNI	GRCGYC	3 cut(s)	33, 288, 504
BssT1I	CCWWGG	1 cut(s)	149
Bst2UI	CCWGG	2 cut(s)	62, 403
Bst4CI	ACNGT	3 cut(s)	360, 891, 928
Bst6I	CTCTTC	1 cut(s)	1175
BstACI	GRCGYC	3 cut(s)	33, 288, 504
BstAPI	GCANNNNNTGC	1 cut(s)	1003
BstC8I	GCNNGC	1 cut(s)	995
BstDEI	CTNAG	3 cut(s)	207, 596, 957
BstDSI	CCRYGG	1 cut(s)	149
BstENI	CCTNNNNNAGG	1 cut(s)	239
BstF5I	GGATG	3 cut(s)	93, 557, 1192
BstFNI	CGCG	4 cut(s)	389, 652, 700, 1077
BstH2I	RGCGCY	1 cut(s)	480
BstHHI	GCGC	1 cut(s)	479
BstKTI	GATC	5 cut(s)	445, 680, 718, 1027, 1135
BstMAI	GTCTC	1 cut(s)	899
BstMBI	GATC	5 cut(s)	442, 677, 715, 1024, 1132
BstMWI	GCNNNNNNNGC	6 cut(s)	62, 360, 433, 474, 637, 1003
BstNI	CCWGG	2 cut(s)	62, 403
BstNSI	RCATGY	1 cut(s)	631
BstSCI	CCNGG	2 cut(s)	60, 401
BstSFI	CTRYAG	2 cut(s)	9, 1101
BstUI	CGCG	4 cut(s)	389, 652, 700, 1077
BstV2I	GAAGAC	1 cut(s)	1155
BstX2I	RGATCY	2 cut(s)	677, 1024
BstYI	RGATCY	2 cut(s)	677, 1024
BsuI	GTATCC	1 cut(s)	491
BsuRI	GGCC	4 cut(s)	65, 354, 955, 993
BtgI	CCRYGG	1 cut(s)	149
BtgZI	GCGATG	1 cut(s)	370
BtrI	CACGTC	1 cut(s)	112
BtsCI	GGATG	3 cut(s)	93, 557, 1192
Cac8I	GCNNGC	1 cut(s)	995
CciI	TCATGA	2 cut(s)	511, 706
CfoI	GCGC	1 cut(s)	479
Cfr10I	RCCGGY	1 cut(s)	993
Cfr13I	GGNCC	4 cut(s)	135, 156, 342, 793
CseI	GACGC	6 cut(s)	41, 250, 277, 512, 552, 706
Csp6I	GTAC	1 cut(s)	415
CviAII	CATG	6 cut(s)	150, 310, 512, 628, 707, 1019
CviQI	GTAC	1 cut(s)	415
DdeI	CTNAG	3 cut(s)	207, 596, 957
DpnI	GATC	5 cut(s)	444, 679, 717, 1026, 1134
DpnII	GATC	5 cut(s)	442, 677, 715, 1024, 1132
DriI	GACNNNNNGTC	2 cut(s)	562, 702
EaeI	YGGCCR	2 cut(s)	63, 991
Eam1104I	CTCTTC	1 cut(s)	1175
Eam1105I	GACNNNNNGTC	2 cut(s)	562, 702
EarI	CTCTTC	1 cut(s)	1175
EciI	GGCGGA	2 cut(s)	104, 392
Ecl136II	GAGCTC	2 cut(s)	70, 295
Eco130I	CCWWGG	1 cut(s)	149
Eco147I	AGGCCT	1 cut(s)	955
Eco24I	GRGCYC	2 cut(s)	72, 297
Eco47I	GGWCC	4 cut(s)	135, 156, 342, 793
Eco53kI	GAGCTC	2 cut(s)	70, 295
EcoICRI	GAGCTC	2 cut(s)	70, 295
EcoNI	CCTNNNNNAGG	1 cut(s)	239
EcoO109I	RGGNCCY	1 cut(s)	342
EcoRII	CCWGG	2 cut(s)	60, 401
EcoT14I	CCWWGG	1 cut(s)	149
EcoT38I	GRGCYC	2 cut(s)	72, 297
ErhI	CCWWGG	1 cut(s)	149
FaeI	CATG	6 cut(s)	153, 313, 515, 631, 710, 1022
FalI	AAGNNNNNCTT	2 cut(s)	819, 851
FaqI	GGGAC	4 cut(s)	142, 384, 467, 569
FatI	CATG	6 cut(s)	149, 309, 511, 627, 706, 1018
FauI	CCCGC	3 cut(s)	81, 312, 730
FauNDI	CATATG	1 cut(s)	634
Fnu4HI	GCNGC	1 cut(s)	118
FokI	GGATG	3 cut(s)	80, 564, 1199
FriOI	GRGCYC	2 cut(s)	72, 297
Fsp4HI	GCNGC	1 cut(s)	118
FspBI	CTAG	3 cut(s)	480, 1137, 1196
GlaI	GCGC	1 cut(s)	478
GluI	GCNGC	1 cut(s)	118
GsaI	CCCAGC	2 cut(s)	40, 497
HaeII	RGCGCY	1 cut(s)	480
HaeIII	GGCC	4 cut(s)	65, 354, 955, 993
HapII	CCGG	5 cut(s)	77, 785, 796, 994, 1127
HgaI	GACGC	6 cut(s)	41, 250, 277, 512, 552, 706
HhaI	GCGC	1 cut(s)	479
Hin1I	GRCGYC	3 cut(s)	33, 288, 504
Hin1II	CATG	6 cut(s)	153, 313, 515, 631, 710, 1022
Hin6I	GCGC	1 cut(s)	477
HinP1I	GCGC	1 cut(s)	477
HinfI	GANTC	7 cut(s)	245, 272, 397, 421, 664, 703, 1072
HpaII	CCGG	5 cut(s)	77, 785, 796, 994, 1127
HphI	GGTGA	3 cut(s)	293, 592, 706
Hpy166II	GTNNAC	3 cut(s)	487, 924, 1142
Hpy188I	TCNGA	6 cut(s)	210, 250, 442, 551, 807, 1053
Hpy188III	TCNNGA	3 cut(s)	512, 532, 707
Hpy8I	GTNNAC	3 cut(s)	487, 924, 1142
Hpy99I	CGWCG	7 cut(s)	143, 266, 287, 293, 442, 506, 568
HpyAV	CCTTC	5 cut(s)	67, 206, 821, 945, 1196
HpyCH4III	ACNGT	3 cut(s)	360, 891, 928
HpyCH4IV	ACGT	2 cut(s)	111, 372
HpyCH4V	TGCA	6 cut(s)	11, 348, 363, 369, 685, 840
HpyF10VI	GCNNNNNNNGC	6 cut(s)	62, 360, 433, 474, 637, 1003
HpyF3I	CTNAG	3 cut(s)	207, 596, 957
HpySE526I	ACGT	2 cut(s)	111, 372
Hsp92I	GRCGYC	3 cut(s)	33, 288, 504
Hsp92II	CATG	6 cut(s)	153, 313, 515, 631, 710, 1022
HspAI	GCGC	1 cut(s)	477
KroI	GCCGGC	1 cut(s)	993
KroNI	GCCGGC	1 cut(s)	995
Kzo9I	GATC	5 cut(s)	442, 677, 715, 1024, 1132
LmnI	GCTCC	2 cut(s)	75, 176
LweI	GCATC	2 cut(s)	372, 771
MaeI	CTAG	3 cut(s)	480, 1137, 1196
MaeII	ACGT	2 cut(s)	111, 372
MaeIII	GTNAC	3 cut(s)	314, 644, 694
MalI	GATC	5 cut(s)	444, 679, 717, 1026, 1134
MbiI	CCGCTC	1 cut(s)	307
MboI	GATC	5 cut(s)	442, 677, 715, 1024, 1132
MboII	GAAGA	5 cut(s)	26, 869, 1034, 1160, 1192
MflI	RGATCY	2 cut(s)	677, 1024
MhlI	GDGCHC	2 cut(s)	72, 297
MluCI	AATT	4 cut(s)	327, 524, 917, 1065
MlyI	GAGTC	3 cut(s)	239, 406, 712
MmeI	TCCRAC	2 cut(s)	273, 420
MroNI	GCCGGC	1 cut(s)	993
MseI	TTAA	4 cut(s)	408, 900, 966, 1068
MspI	CCGG	5 cut(s)	77, 785, 796, 994, 1127
MspR9I	CCNGG	2 cut(s)	62, 403
Mva1269I	GAATGC	1 cut(s)	610
MvaI	CCWGG	2 cut(s)	62, 403
MvnI	CGCG	4 cut(s)	389, 652, 700, 1077
MwoI	GCNNNNNNNGC	6 cut(s)	62, 360, 433, 474, 637, 1003
NaeI	GCCGGC	1 cut(s)	995
NcoI	CCATGG	1 cut(s)	149
NdeI	CATATG	1 cut(s)	634
NdeII	GATC	5 cut(s)	442, 677, 715, 1024, 1132
NgoMIV	GCCGGC	1 cut(s)	993
NlaIII	CATG	6 cut(s)	153, 313, 515, 631, 710, 1022
NlaIV	GGNNCC	3 cut(s)	158, 343, 777
NmeAIII	GCCGAG	1 cut(s)	91
NmuCI	GTSAC	1 cut(s)	694
NspI	RCATGY	1 cut(s)	631
PagI	TCATGA	2 cut(s)	511, 706
PceI	AGGCCT	1 cut(s)	955
PcsI	WCGNNNNNNNCGW	1 cut(s)	288
PctI	GAATGC	1 cut(s)	610
PdiI	GCCGGC	1 cut(s)	995
PfeI	GAWTC	4 cut(s)	272, 421, 664, 1072
PflFI	GACNNNGTC	1 cut(s)	287
PflMI	CCANNNNNTGG	1 cut(s)	150
PkrI	GCNGC	1 cut(s)	119
PleI	GAGTC	3 cut(s)	239, 405, 711
PpsI	GAGTC	3 cut(s)	239, 405, 711
PpuMI	RGGWCCY	1 cut(s)	342
Psp124BI	GAGCTC	2 cut(s)	72, 297
Psp5II	RGGWCCY	1 cut(s)	342
Psp6I	CCWGG	2 cut(s)	60, 401
PspFI	CCCAGC	2 cut(s)	36, 493
PspGI	CCWGG	2 cut(s)	60, 401
PspN4I	GGNNCC	3 cut(s)	158, 343, 777
PspPI	GGNCC	4 cut(s)	135, 156, 342, 793
PspPPI	RGGWCCY	1 cut(s)	342
PstI	CTGCAG	1 cut(s)	13
PsuI	RGATCY	2 cut(s)	677, 1024
PsyI	GACNNNGTC	1 cut(s)	287
RsaI	GTAC	1 cut(s)	416
RsaNI	GTAC	1 cut(s)	415
SacI	GAGCTC	2 cut(s)	72, 297
SaqAI	TTAA	4 cut(s)	408, 900, 966, 1068
SatI	GCNGC	1 cut(s)	118
Sau3AI	GATC	5 cut(s)	442, 677, 715, 1024, 1132
Sau96I	GGNCC	4 cut(s)	135, 156, 342, 793
SchI	GAGTC	3 cut(s)	239, 406, 712
ScrFI	CCNGG	2 cut(s)	62, 403
SduI	GDGCHC	2 cut(s)	72, 297
SfaNI	GCATC	2 cut(s)	372, 771
SfcI	CTRYAG	2 cut(s)	9, 1101
SinI	GGWCC	4 cut(s)	135, 156, 342, 793
SmlI	CTYRAG	1 cut(s)	939
SmoI	CTYRAG	1 cut(s)	939
Sse9I	AATT	4 cut(s)	327, 524, 917, 1065
SseBI	AGGCCT	1 cut(s)	955
SspMI	CTAG	3 cut(s)	480, 1137, 1196
SstI	GAGCTC	2 cut(s)	72, 297
StuI	AGGCCT	1 cut(s)	955
StyD4I	CCNGG	2 cut(s)	60, 401
StyI	CCWWGG	1 cut(s)	149
TaaI	ACNGT	3 cut(s)	360, 891, 928
TaiI	ACGT	2 cut(s)	114, 375
TaqI	TCGA	6 cut(s)	165, 264, 270, 291, 445, 621
TasI	AATT	4 cut(s)	327, 524, 917, 1065
TatI	WGTACW	1 cut(s)	414
TauI	GCSGC	1 cut(s)	120
TfiI	GAWTC	4 cut(s)	272, 421, 664, 1072
Tru1I	TTAA	4 cut(s)	408, 900, 966, 1068
Tru9I	TTAA	4 cut(s)	408, 900, 966, 1068
TseFI	GTSAC	1 cut(s)	694
Tsp45I	GTSAC	1 cut(s)	694
TspDTI	ATGAA	7 cut(s)	17, 188, 500, 617, 723, 870, 1035
TspGWI	ACGGA	2 cut(s)	127, 227
Tth111I	GACNNNGTC	1 cut(s)	287
Van91I	CCANNNNNTGG	1 cut(s)	150
VpaK11BI	GGWCC	4 cut(s)	135, 156, 342, 793
XagI	CCTNNNNNAGG	1 cut(s)	239
XceI	RCATGY	1 cut(s)	631
XspI	CTAG	3 cut(s)	480, 1137, 1196

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.