Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0004460

Physical Location & Seq

Genomic Coordinates Reverse (-)

47380372 .. 47382414

Gene Structure 2043 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1358500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1230 bp

ATGAAGACTCCAAAATCCACCGTAGATACCACGCAGCTTCAAATCCAAGCATCCAAGGCTATGGCGGATCTCCCGCCGGAAGTAATCGTCGACATACTCTCTCGTTTACCCGTCTGCCTCCTCCTCCGTTTCCGGTCGATTGCAAAACCATGGCGGTCGCTCATCGACAGCTCATACTTCGTCGATCTCCACCTCACGCAATCGGCAGAGTCCAAATCGCATCTCAGTTTGATTCTCAGAAAGGACTCCGACCTCTACTGCATCGATTTCGATTCTTTAAACGACGCCGTCGAGCTCAATCATCCACTGATGTGTTACAGCAATCGGATTCGCGTGCTGGGATCCTGCAACGGCCTCCTGTGCATCTGTAACGTGGCTGAAGATATCGCTTTCTGGAACCCGTCGACGAAGAAATACAGAATCTTGCCATCGCTGCCATCGGATCGAAAGCGCGATTCGAATATGTGTTTATGTGGAGCTAGGGTTTATGGTCTCGGATATGACGCCGTTCACGATGATTATAAACTGGTGAGGATTTCTCAGTTTATTGGATTGGATTACCTGTCGTTTGTGTCTGAGGTGAGGGTTTTTAGCCTAAGAAACAACGCGTGGAAGCGACTCGAAGACATGCCTTATGTGCTCTGTTACACACGAAAAATGGGAATTCTTGTGAGCGGTTGTGTGCATTGGGTGGTGACTCGGAACCTCGAATTAGATCAACATGCAATGGAGTTGGTCATTGCATTTGACGTTACGAATGAGACTTGTGGTGAGGTGCCTATGCCGCAGAACATGGACAGGAAGTGTCAGATTGATGTGGGATACTTGGGAGGGTGTCTTTGCATTGTAGCTAAATATGAAGATAAGGGTGTTGATGTGTGGACATTGAAGGAGTATGGGGTTAAAGAGTCTTGGAGTAAATTGTTTACCGTATCGCAAACTCGAAGAATCAAGAGTGTTAGACCTTTGGTGTATTCGAAGAATGGCAGCGAAGTTTTGTTCGAACAAGACCACGAAAATCTCGCTTGGTTTGACCTGAAAAGCCAGAGGGTCAAGAGTGTTAAGGTTCGTGGCTTGCCAGATCTATTTGAGGCTGTAGTTTGTATGGAAAGCCTTGTTTCGGTTCATCCTTGTAGACGAGAGGATAAGAAAAAGCAGGAAGCAGCAGGGGACTTGAAGAATAAGAAGAGGGATGATTTCCTGTCTCAAGGCTTCAAATTGGTGCTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBA_1

Protein Analysis

410

Amino Acids

46.73

Weight (kDa)

8.37

Isoelectric Point (pI)

36.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	23 - 60	3.5e-07	F-box domain
FBA_1	PF07734	78 - 351	2.2e-25	F-box associated beta propeller domain
FBA_3	PF08268	104 - 362	3.6e-22	F-box associated beta propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004460)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G12560 AT4G12560 AT4G12560 AT4G22390 AT4G22390
fragaria_vesca	FvH4_3g00900 FvH4_3g00900
malus_domestica	MD05G1358500.v1.1 MD10G1332600.v1.1
prunus_persica	Prupe.4G009600_v2.0.a1 Prupe.4G009600_v2.0.a1 Prupe.4G009600_v2.0.a1 Prupe.4G009600_v2.0.a1 Prupe.4G009600_v2.0.a1 Prupe.4G009600_v2.0.a1 Prupe.4G009600_v2.0.a1 Prupe.4G009600_v2.0.a1 Prupe.4G009600_v2.0.a1
pyrus_communis	pycom05g32420 pycom10g28200
rosa_chinensis	RchiOBHm_Chr5g0001381
rosa_laevigata	RLG00000030926
rosa_multiflora	Rmu_sc0001706.1_g000001 Rmu_sc0003749.1_g000016 Rmu_sc0016478.1_g000001
rosa_roxburghii	Rroxscaffold_1G00074980
rosa_rugosa	Rorug04G0390300
rosa_samantha	Rh5AG010700 Rh5BG013400 Rh5CG011700 Rh5DG011100
rosa_wichuraiana	Rw5G001020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	522
AccB1I	GGYRCC	1 cut(s)	775
AccBSI	CCGCTC	1 cut(s)	675
AccI	GTMKAC	3 cut(s)	90, 404, 1135
AccII	CGCG	3 cut(s)	333, 453, 608
AciI	CCGC	5 cut(s)	65, 74, 154, 675, 785
AclWI	GGATC	4 cut(s)	75, 336, 349, 450
AcsI	RAATTY	1 cut(s)	663
AcuI	CTGAAG	1 cut(s)	399
AcyI	GRCGYC	2 cut(s)	285, 504
AfiI	CCNNNNNNNGG	1 cut(s)	1120
AflIII	ACRYGT	1 cut(s)	606
AgsI	TTSAA	4 cut(s)	41, 889, 1177, 1216
AleI	CACNNNNGTG	1 cut(s)	310
AluBI	AGCT	5 cut(s)	37, 171, 295, 479, 851
AluI	AGCT	5 cut(s)	37, 171, 295, 479, 851
Alw21I	GWGCWC	2 cut(s)	297, 642
Alw26I	GTCTC	3 cut(s)	497, 755, 1209
AlwI	GGATC	4 cut(s)	75, 336, 349, 450
AoxI	GGCC	1 cut(s)	352
ApeKI	GCWGC	4 cut(s)	34, 433, 987, 1163
ApoI	RAATTY	1 cut(s)	663
AspLEI	GCGC	1 cut(s)	453
AsuHPI	GGTGA	4 cut(s)	541, 592, 706, 782
AsuII	TTCGAA	3 cut(s)	458, 977, 1002
BamHI	GGATCC	1 cut(s)	341
BanI	GGYRCC	1 cut(s)	775
BanII	GRGCYC	1 cut(s)	297
BbsI	GAAGAC	2 cut(s)	11, 630
Bbv12I	GWGCWC	2 cut(s)	297, 642
BbvI	GCAGC	4 cut(s)	46, 420, 999, 1175
BccI	CCATC	2 cut(s)	436, 445
BceAI	ACGGC	3 cut(s)	272, 367, 491
BcgI	CGANNNNNNTGC	2 cut(s)	250, 284
BciVI	GTATCC	1 cut(s)	815
BcoDI	GTCTC	3 cut(s)	497, 755, 1209
BfaI	CTAG	1 cut(s)	480
BfmI	CTRYAG	2 cut(s)	1095, 1226
BfuI	GTATCC	1 cut(s)	815
BglII	AGATCT	1 cut(s)	1081
BisI	GCNGC	5 cut(s)	35, 434, 785, 988, 1164
BlsI	GCNGC	5 cut(s)	36, 435, 786, 989, 1165
BmiI	GGNNCC	4 cut(s)	343, 398, 704, 777
BmsI	GCATC	4 cut(s)	59, 229, 270, 372
BpiI	GAAGAC	2 cut(s)	11, 630
BplI	GAGNNNNNCTC	2 cut(s)	523, 555
Bpu14I	TTCGAA	3 cut(s)	458, 977, 1002
BpuEI	CTTGAG	1 cut(s)	1191
Bsa29I	ATCGAT	1 cut(s)	264
BsaHI	GRCGYC	2 cut(s)	285, 504
BsaI	GGTCTC	1 cut(s)	497
BsaJI	CCNNGG	2 cut(s)	54, 149
BsaWI	WCCGGW	1 cut(s)	132
BsaXI	ACNNNNNCTCC	2 cut(s)	468, 498
Bsc4I	CCNNNNNNNGG	1 cut(s)	1120
Bse1I	ACTGG	1 cut(s)	531
Bse3DI	GCAATG	2 cut(s)	732, 738
BseCI	ATCGAT	1 cut(s)	264
BseDI	CCNNGG	2 cut(s)	54, 149
BseGI	GGATG	4 cut(s)	50, 301, 1126, 1198
BseLI	CCNNNNNNNGG	1 cut(s)	1120
BseMI	GCAATG	2 cut(s)	732, 738
BseMII	CTCAG	4 cut(s)	238, 250, 554, 567
BseNI	ACTGG	1 cut(s)	531
BseRI	GAGGAG	2 cut(s)	110, 113
BseXI	GCAGC	4 cut(s)	46, 420, 999, 1175
BseYI	CCCAGC	1 cut(s)	337
Bsh1236I	CGCG	3 cut(s)	333, 453, 608
Bsh1285I	CGRYCG	2 cut(s)	137, 158
BshFI	GGCC	1 cut(s)	354
BshNI	GGYRCC	1 cut(s)	775
BshVI	ATCGAT	1 cut(s)	264
BsiEI	CGRYCG	2 cut(s)	137, 158
BsiHKAI	GWGCWC	2 cut(s)	297, 642
BsiSI	CCGG	2 cut(s)	77, 133
BslFI	GGGAC	1 cut(s)	1184
BslI	CCNNNNNNNGG	1 cut(s)	1120
BsmAI	GTCTC	3 cut(s)	497, 755, 1209
BsmFI	GGGAC	1 cut(s)	1184
BsnI	GGCC	1 cut(s)	354
Bso31I	GGTCTC	1 cut(s)	497
Bsp119I	TTCGAA	3 cut(s)	458, 977, 1002
Bsp1286I	GDGCHC	2 cut(s)	297, 642
Bsp143I	GATC	6 cut(s)	67, 184, 341, 442, 715, 1081
Bsp19I	CCATGG	1 cut(s)	149
BspACI	CCGC	5 cut(s)	65, 74, 154, 675, 785
BspANI	GGCC	1 cut(s)	354
BspCNI	CTCAG	4 cut(s)	237, 249, 553, 568
BspDI	ATCGAT	1 cut(s)	264
BspFNI	CGCG	3 cut(s)	333, 453, 608
BspLI	GGNNCC	4 cut(s)	343, 398, 704, 777
BspPI	GGATC	4 cut(s)	75, 336, 349, 450
BspT104I	TTCGAA	3 cut(s)	458, 977, 1002
BspT107I	GGYRCC	1 cut(s)	775
BspTNI	GGTCTC	1 cut(s)	497
BsrBI	CCGCTC	1 cut(s)	675
BsrDI	GCAATG	2 cut(s)	732, 738
BsrI	ACTGG	1 cut(s)	531
BssECI	CCNNGG	2 cut(s)	54, 149
BssMI	GATC	6 cut(s)	67, 184, 341, 442, 715, 1081
BssNI	GRCGYC	2 cut(s)	285, 504
BssT1I	CCWWGG	2 cut(s)	54, 149
Bst4CI	ACNGT	2 cut(s)	22, 931
Bst6I	CTCTTC	1 cut(s)	1181
BstACI	GRCGYC	2 cut(s)	285, 504
BstBI	TTCGAA	3 cut(s)	458, 977, 1002
BstC8I	GCNNGC	2 cut(s)	335, 1076
BstDEI	CTNAG	5 cut(s)	224, 236, 540, 576, 596
BstDSI	CCRYGG	1 cut(s)	149
BstF5I	GGATG	4 cut(s)	50, 301, 1126, 1198
BstFNI	CGCG	3 cut(s)	333, 453, 608
BstHHI	GCGC	1 cut(s)	453
BstKTI	GATC	6 cut(s)	70, 187, 344, 445, 718, 1084
BstMAI	GTCTC	3 cut(s)	497, 755, 1209
BstMBI	GATC	6 cut(s)	67, 184, 341, 442, 715, 1081
BstMCI	CGRYCG	2 cut(s)	137, 158
BstMWI	GCNNNNNNNGC	5 cut(s)	56, 360, 433, 637, 784
BstNSI	RCATGY	2 cut(s)	631, 725
BstSFI	CTRYAG	2 cut(s)	1095, 1226
BstUI	CGCG	3 cut(s)	333, 453, 608
BstV1I	GCAGC	4 cut(s)	46, 420, 999, 1175
BstV2I	GAAGAC	2 cut(s)	11, 630
BstX2I	RGATCY	3 cut(s)	67, 341, 1081
BstXI	CCANNNNNNTGG	1 cut(s)	61
BstYI	RGATCY	3 cut(s)	67, 341, 1081
Bsu15I	ATCGAT	1 cut(s)	264
BsuI	GTATCC	1 cut(s)	815
BsuRI	GGCC	1 cut(s)	354
BsuTUI	ATCGAT	1 cut(s)	264
BtgI	CCRYGG	1 cut(s)	149
BtgZI	GCGATG	1 cut(s)	414
BtsCI	GGATG	4 cut(s)	50, 301, 1126, 1198
BtsIMutI	CAGTG	1 cut(s)	305
Cac8I	GCNNGC	2 cut(s)	335, 1076
CfoI	GCGC	1 cut(s)	453
ClaI	ATCGAT	1 cut(s)	264
CseI	GACGC	2 cut(s)	293, 512
CviAII	CATG	4 cut(s)	150, 628, 722, 793
DdeI	CTNAG	5 cut(s)	224, 236, 540, 576, 596
DpnI	GATC	6 cut(s)	69, 186, 343, 444, 717, 1083
DpnII	GATC	6 cut(s)	67, 184, 341, 442, 715, 1081
DraI	TTTAAA	1 cut(s)	279
Eam1104I	CTCTTC	1 cut(s)	1181
EarI	CTCTTC	1 cut(s)	1181
EciI	GGCGGA	1 cut(s)	80
Ecl136II	GAGCTC	1 cut(s)	295
Eco130I	CCWWGG	2 cut(s)	54, 149
Eco24I	GRGCYC	1 cut(s)	297
Eco31I	GGTCTC	1 cut(s)	497
Eco32I	GATATC	1 cut(s)	385
Eco53kI	GAGCTC	1 cut(s)	295
Eco57I	CTGAAG	1 cut(s)	399
EcoICRI	GAGCTC	1 cut(s)	295
EcoRI	GAATTC	1 cut(s)	663
EcoRV	GATATC	1 cut(s)	385
EcoT14I	CCWWGG	2 cut(s)	54, 149
EcoT38I	GRGCYC	1 cut(s)	297
ErhI	CCWWGG	2 cut(s)	54, 149
FaeI	CATG	4 cut(s)	153, 631, 725, 796
FaqI	GGGAC	1 cut(s)	1184
FatI	CATG	4 cut(s)	149, 627, 721, 792
FauI	CCCGC	1 cut(s)	81
FblI	GTMKAC	3 cut(s)	90, 404, 1135
Fnu4HI	GCNGC	5 cut(s)	35, 434, 785, 988, 1164
FokI	GGATG	4 cut(s)	37, 288, 1113, 1205
FriOI	GRGCYC	1 cut(s)	297
Fsp4HI	GCNGC	5 cut(s)	35, 434, 785, 988, 1164
FspBI	CTAG	1 cut(s)	480
GlaI	GCGC	1 cut(s)	452
GluI	GCNGC	5 cut(s)	35, 434, 785, 988, 1164
GsaI	CCCAGC	1 cut(s)	341
HaeIII	GGCC	1 cut(s)	354
HapII	CCGG	2 cut(s)	77, 133
HgaI	GACGC	2 cut(s)	293, 512
HhaI	GCGC	1 cut(s)	453
Hin1I	GRCGYC	2 cut(s)	285, 504
Hin1II	CATG	4 cut(s)	153, 631, 725, 796
Hin6I	GCGC	1 cut(s)	451
HinP1I	GCGC	1 cut(s)	451
HincII	GTYRAC	2 cut(s)	91, 405
HindII	GTYRAC	2 cut(s)	91, 405
HpaII	CCGG	2 cut(s)	77, 133
HphI	GGTGA	4 cut(s)	541, 592, 706, 782
Hpy166II	GTNNAC	7 cut(s)	91, 107, 405, 511, 882, 927, 1136
Hpy188I	TCNGA	8 cut(s)	239, 250, 327, 442, 497, 577, 702, 810
Hpy188III	TCNNGA	4 cut(s)	394, 512, 952, 1054
Hpy8I	GTNNAC	7 cut(s)	91, 107, 405, 511, 882, 927, 1136
Hpy99I	CGWCG	6 cut(s)	92, 185, 287, 293, 406, 409
HpyAV	CCTTC	1 cut(s)	883
HpyCH4III	ACNGT	2 cut(s)	22, 931
HpyCH4IV	ACGT	2 cut(s)	372, 750
HpyCH4V	TGCA	8 cut(s)	143, 261, 348, 363, 685, 725, 743, 843
HpyF10VI	GCNNNNNNNGC	5 cut(s)	56, 360, 433, 637, 784
HpyF3I	CTNAG	5 cut(s)	224, 236, 540, 576, 596
HpySE526I	ACGT	2 cut(s)	372, 750
Hsp92I	GRCGYC	2 cut(s)	285, 504
Hsp92II	CATG	4 cut(s)	153, 631, 725, 796
HspAI	GCGC	1 cut(s)	451
Kzo9I	GATC	6 cut(s)	67, 184, 341, 442, 715, 1081
LmnI	GCTCC	1 cut(s)	476
Lsp1109I	GCAGC	4 cut(s)	46, 420, 999, 1175
LweI	GCATC	4 cut(s)	59, 229, 270, 372
MaeI	CTAG	1 cut(s)	480
MaeII	ACGT	2 cut(s)	372, 750
MaeIII	GTNAC	5 cut(s)	314, 368, 644, 694, 751
MalI	GATC	6 cut(s)	69, 186, 343, 444, 717, 1083
MbiI	CCGCTC	1 cut(s)	675
MboI	GATC	6 cut(s)	67, 184, 341, 442, 715, 1081
MboII	GAAGA	9 cut(s)	16, 392, 421, 635, 872, 957, 991, 1189, 1198
MflI	RGATCY	3 cut(s)	67, 341, 1081
MhlI	GDGCHC	2 cut(s)	297, 642
MluCI	AATT	4 cut(s)	663, 710, 920, 1217
MluI	ACGCGT	1 cut(s)	606
MlyI	GAGTC	5 cut(s)	218, 239, 612, 691, 917
MmeI	TCCRAC	1 cut(s)	273
MseI	TTAA	3 cut(s)	278, 903, 1062
MslI	CAYNNNNRTG	1 cut(s)	310
MspI	CCGG	2 cut(s)	77, 133
MvnI	CGCG	3 cut(s)	333, 453, 608
MwoI	GCNNNNNNNGC	5 cut(s)	56, 360, 433, 637, 784
NcoI	CCATGG	1 cut(s)	149
NdeII	GATC	6 cut(s)	67, 184, 341, 442, 715, 1081
NlaIII	CATG	4 cut(s)	153, 631, 725, 796
NlaIV	GGNNCC	4 cut(s)	343, 398, 704, 777
NmuCI	GTSAC	1 cut(s)	694
NspI	RCATGY	2 cut(s)	631, 725
NspV	TTCGAA	3 cut(s)	458, 977, 1002
OliI	CACNNNNGTG	1 cut(s)	310
PcsI	WCGNNNNNNNCGW	2 cut(s)	288, 510
PfeI	GAWTC	6 cut(s)	232, 272, 328, 420, 455, 948
PflFI	GACNNNGTC	1 cut(s)	287
PkrI	GCNGC	5 cut(s)	36, 435, 786, 989, 1165
PleI	GAGTC	5 cut(s)	217, 239, 612, 691, 916
PpsI	GAGTC	5 cut(s)	217, 239, 612, 691, 916
PsiI	TTATAA	1 cut(s)	522
Psp124BI	GAGCTC	1 cut(s)	297
PspFI	CCCAGC	1 cut(s)	337
PspN4I	GGNNCC	4 cut(s)	343, 398, 704, 777
PsuI	RGATCY	3 cut(s)	67, 341, 1081
PsyI	GACNNNGTC	1 cut(s)	287
RseI	CAYNNNNRTG	1 cut(s)	310
SacI	GAGCTC	1 cut(s)	297
SalI	GTCGAC	2 cut(s)	89, 403
SaqAI	TTAA	3 cut(s)	278, 903, 1062
SatI	GCNGC	5 cut(s)	35, 434, 785, 988, 1164
Sau3AI	GATC	6 cut(s)	67, 184, 341, 442, 715, 1081
SchI	GAGTC	5 cut(s)	218, 239, 612, 691, 917
SduI	GDGCHC	2 cut(s)	297, 642
SfaNI	GCATC	4 cut(s)	59, 229, 270, 372
SfcI	CTRYAG	2 cut(s)	1095, 1226
SfuI	TTCGAA	3 cut(s)	458, 977, 1002
SgrDI	CGTCGACG	1 cut(s)	403
SmiMI	CAYNNNNRTG	1 cut(s)	310
SmlI	CTYRAG	1 cut(s)	1206
SmoI	CTYRAG	1 cut(s)	1206
Sse9I	AATT	4 cut(s)	663, 710, 920, 1217
SsiI	CCGC	5 cut(s)	65, 74, 154, 675, 785
SspMI	CTAG	1 cut(s)	480
SstI	GAGCTC	1 cut(s)	297
StyI	CCWWGG	2 cut(s)	54, 149
TaaI	ACNGT	2 cut(s)	22, 931
TaiI	ACGT	2 cut(s)	375, 753
TasI	AATT	4 cut(s)	663, 710, 920, 1217
TauI	GCSGC	1 cut(s)	787
TfiI	GAWTC	6 cut(s)	232, 272, 328, 420, 455, 948
Tru1I	TTAA	3 cut(s)	278, 903, 1062
Tru9I	TTAA	3 cut(s)	278, 903, 1062
TscAI	CASTG	1 cut(s)	312
TseFI	GTSAC	1 cut(s)	694
TseI	GCWGC	4 cut(s)	34, 433, 987, 1163
Tsp45I	GTSAC	1 cut(s)	694
TspDTI	ATGAA	3 cut(s)	17, 873, 1115
TspGWI	ACGGA	1 cut(s)	116
TspRI	CASTG	1 cut(s)	312
Tth111I	GACNNNGTC	1 cut(s)	287
XapI	RAATTY	1 cut(s)	663
XceI	RCATGY	2 cut(s)	631, 725
XmiI	GTMKAC	3 cut(s)	90, 404, 1135
XspI	CTAG	1 cut(s)	480

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.