MD10G1332600.v1.1

f-box protein

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
Physical Location & Seq
Reverse (-)
40991064 .. 40994028
2965 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1332600.v1.1.491

Sequence Viewer

Length: 1230 bp
ATGAAGACTCCAAAATCCACCCTAGATACGACGCAGCTTCAAATCCAAGCAACCGTGGCCATGGCCGAACTCCCGCCGGAGGTAATCGTCGACATACTCTCTCGTCTGCCCGTCGCCCGCCTCCTCCGCTTCCGGTCGATTGCAAAACCATGGCGGTCGCTCATCGACAGCTCATACTTCGTCCATCTCCACCTCACGCAATCGGCAGAGTCCAAATCGCATCTCAGTTTGATTCTCAAAAGGGACTCCGACCTCTACTGCATCAGTTTCGACTCCTTAAACGACGCCGTCGAGCTCAATCATCCACTCATGTGCTACAGCAATCGAATTCGCGTTTTGGGATCCTGCAACGGCCTTCTGTGCCTCTGTAACGTGGCCGAAGACATCGCTCTCTGGAACCCGTCGACGAAGAAGTACAGAATCTTGCCGTCTCTGCCATCGGATCGAAAGCGCGATTCGAACATGTGCTTATGTGGCGCGAGGGTTTATGGTCTTGGATACCACGCTATCCAGGATGACTATAAATTGGTGAGGATTTCTCAGTTTATCGGATTGGATCACCTGTCGTTTCATTCCGAGGTGAGGGTTTATAGCTTGAGAAACAACGAGTGGAAGCGAGTCGAAGACATGCCTTATGTACTCTGTAACACACGAAAAATGGGGATTCTTGTGAGCGGTTGTGTGCATTGGGTGGTGACTCGGAACCTCGAATTGGATCAAGCTGCAACCGAATCGGTCATTGCATTTGACGTTGCGAATGAGACTTTTCGTGAGGTGCCTATGCCGCAGAACATGGACAGGAAGTGTCAGATTGATGTGGGATGCTTGGGAGGGTGTCTTTGCATTGTAGCTAAATATGAAGATAAGGATGTTGATGTGTGGACATTGAAGGAGTATGGGGTTCAAGAGTCTTGGAGTAAATTGTTTACCGTTGCGCAAACTCGAAGAATCAAGAGCGTTAGGCCTTTGGTGTATTCAAAGAATGACCGCGAAGTGTTGTTCGAACAAGACCACGAAAGTCTTGTTTGGTTTGACCTGAAAAGCCAGAAGGTCAAGCGTGTTAAGGTTCGCGGCTTGCCAGCTATGTTTGAGGCTGTAGTTTGTATGGAAAGCCTTGTTCCGGTTCATCCTCGTAGACGAGAGGATGAGAAGCAGCAGGAAGCAGCAGGGGACAAGCAGAATAAGAAGAGGGATGATTTCCTGGCTCAAGGCTTCAAATTGGTGCTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

410

Amino Acids

46.94

Weight (kDa)

8.55

Isoelectric Point (pI)

45.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 22 - 58 5.1e-06 F-box-like
F-box PF00646 23 - 61 4.1e-07 F-box domain
FBA_1 PF07734 78 - 353 1.1e-27 F-box associated beta propeller domain
FBA_3 PF08268 78 - 361 4.7e-24 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 936
AccB1I GGYRCC 1 cut(s) 775
AccBSI CCGCTC 1 cut(s) 675
AccI GTMKAC 3 cut(s) 90, 404, 1135
AccII CGCG 5 cut(s) 333, 453, 479, 990, 1071
AciI CCGC 8 cut(s) 74, 118, 127, 154, 675, 785, 988, 1071
AclWI GGATC 5 cut(s) 336, 349, 450, 564, 723
AcoI YGGCCR 3 cut(s) 57, 63, 375
AcsI RAATTY 1 cut(s) 327
AcyI GRCGYC 1 cut(s) 285
AfaI GTAC 2 cut(s) 416, 639
AfiI CCNNNNNNNGG 4 cut(s) 79, 582, 712, 1120
AflIII ACRYGT 1 cut(s) 462
AgsI TTSAA 5 cut(s) 41, 889, 905, 978, 1216
AjnI CCWGG 2 cut(s) 510, 1200
AjuI GAANNNNNNNTTGG 2 cut(s) 695, 727
AleI CACNNNNGTG 1 cut(s) 310
AluBI AGCT 7 cut(s) 37, 171, 295, 594, 722, 851, 1082
AluI AGCT 7 cut(s) 37, 171, 295, 594, 722, 851, 1082
Alw21I GWGCWC 1 cut(s) 297
Alw26I GTCTC 2 cut(s) 435, 755
AlwI GGATC 5 cut(s) 336, 349, 450, 564, 723
AoxI GGCC 5 cut(s) 57, 63, 352, 375, 962
ApeKI GCWGC 4 cut(s) 34, 722, 1153, 1163
ApoI RAATTY 1 cut(s) 327
AspLEI GCGC 3 cut(s) 453, 479, 937
AsuHPI GGTGA 4 cut(s) 541, 551, 592, 706
AsuII TTCGAA 2 cut(s) 458, 1002
BalI TGGCCA 1 cut(s) 59
BamHI GGATCC 1 cut(s) 341
BanI GGYRCC 1 cut(s) 775
BanII GRGCYC 1 cut(s) 297
BbsI GAAGAC 3 cut(s) 11, 387, 630
Bbv12I GWGCWC 1 cut(s) 297
BbvI GCAGC 4 cut(s) 46, 709, 1165, 1175
BccI CCATC 2 cut(s) 192, 445
BceAI ACGGC 3 cut(s) 272, 367, 412
BcgI CGANNNNNNTGC 4 cut(s) 250, 284, 714, 748
BciT130I CCWGG 2 cut(s) 512, 1202
BciVI GTATCC 1 cut(s) 491
BcoDI GTCTC 2 cut(s) 435, 755
BfaI CTAG 1 cut(s) 23
BfmI CTRYAG 3 cut(s) 316, 1095, 1226
BfuI GTATCC 1 cut(s) 491
BisI GCNGC 6 cut(s) 35, 723, 785, 1072, 1154, 1164
BlsI GCNGC 6 cut(s) 36, 724, 786, 1073, 1155, 1165
Bme1390I CCNGG 2 cut(s) 512, 1202
BmiI GGNNCC 4 cut(s) 343, 398, 704, 777
BmrFI CCNGG 2 cut(s) 512, 1202
BmsI GCATC 3 cut(s) 229, 270, 812
BpiI GAAGAC 3 cut(s) 11, 387, 630
BplI GAGNNNNNCTC 2 cut(s) 523, 555
Bpu14I TTCGAA 2 cut(s) 458, 1002
BpuEI CTTGAG 2 cut(s) 616, 1191
BsaHI GRCGYC 1 cut(s) 285
BsaJI CCNNGG 4 cut(s) 54, 60, 149, 576
BsaWI WCCGGW 2 cut(s) 132, 1120
Bsc4I CCNNNNNNNGG 4 cut(s) 79, 582, 712, 1120
Bse3DI GCAATG 1 cut(s) 738
BseBI CCWGG 2 cut(s) 512, 1202
BseDI CCNNGG 4 cut(s) 54, 60, 149, 576
BseGI GGATG 7 cut(s) 301, 520, 827, 874, 1126, 1150, 1198
BseLI CCNNNNNNNGG 4 cut(s) 79, 582, 712, 1120
BseMI GCAATG 1 cut(s) 738
BseMII CTCAG 2 cut(s) 238, 554
BseRI GAGGAG 1 cut(s) 113
BseXI GCAGC 4 cut(s) 46, 709, 1165, 1175
Bsh1236I CGCG 5 cut(s) 333, 453, 479, 990, 1071
Bsh1285I CGRYCG 2 cut(s) 137, 158
BshFI GGCC 5 cut(s) 59, 65, 354, 377, 964
BshNI GGYRCC 1 cut(s) 775
BsiEI CGRYCG 2 cut(s) 137, 158
BsiHKAI GWGCWC 1 cut(s) 297
BsiSI CCGG 3 cut(s) 77, 133, 1121
BslFI GGGAC 2 cut(s) 257, 1184
BslI CCNNNNNNNGG 4 cut(s) 79, 582, 712, 1120
BsmAI GTCTC 2 cut(s) 435, 755
BsmBI CGTCTC 1 cut(s) 435
BsmFI GGGAC 2 cut(s) 257, 1184
BsnI GGCC 5 cut(s) 59, 65, 354, 377, 964
Bsp119I TTCGAA 2 cut(s) 458, 1002
Bsp1286I GDGCHC 1 cut(s) 297
Bsp143I GATC 4 cut(s) 341, 442, 556, 715
Bsp19I CCATGG 2 cut(s) 60, 149
BspACI CCGC 8 cut(s) 74, 118, 127, 154, 675, 785, 988, 1071
BspANI GGCC 5 cut(s) 59, 65, 354, 377, 964
BspCNI CTCAG 2 cut(s) 237, 553
BspFNI CGCG 5 cut(s) 333, 453, 479, 990, 1071
BspLI GGNNCC 4 cut(s) 343, 398, 704, 777
BspPI GGATC 5 cut(s) 336, 349, 450, 564, 723
BspT104I TTCGAA 2 cut(s) 458, 1002
BspT107I GGYRCC 1 cut(s) 775
BsrBI CCGCTC 1 cut(s) 675
BsrDI GCAATG 1 cut(s) 738
BssECI CCNNGG 4 cut(s) 54, 60, 149, 576
BssMI GATC 4 cut(s) 341, 442, 556, 715
BssNI GRCGYC 1 cut(s) 285
BssT1I CCWWGG 2 cut(s) 60, 149
Bst2UI CCWGG 2 cut(s) 512, 1202
Bst4CI ACNGT 2 cut(s) 55, 931
Bst6I CTCTTC 1 cut(s) 1181
BstACI GRCGYC 1 cut(s) 285
BstBI TTCGAA 2 cut(s) 458, 1002
BstC8I GCNNGC 3 cut(s) 118, 1076, 1080
BstDEI CTNAG 2 cut(s) 224, 540
BstDSI CCRYGG 3 cut(s) 54, 60, 149
BstF5I GGATG 7 cut(s) 301, 520, 827, 874, 1126, 1150, 1198
BstFNI CGCG 5 cut(s) 333, 453, 479, 990, 1071
BstHHI GCGC 3 cut(s) 453, 479, 937
BstKTI GATC 4 cut(s) 344, 445, 559, 718
BstMAI GTCTC 2 cut(s) 435, 755
BstMBI GATC 4 cut(s) 341, 442, 556, 715
BstMCI CGRYCG 2 cut(s) 137, 158
BstMWI GCNNNNNNNGC 6 cut(s) 56, 126, 360, 433, 474, 784
BstNI CCWGG 2 cut(s) 512, 1202
BstNSI RCATGY 2 cut(s) 466, 631
BstSCI CCNGG 2 cut(s) 510, 1200
BstSFI CTRYAG 3 cut(s) 316, 1095, 1226
BstUI CGCG 5 cut(s) 333, 453, 479, 990, 1071
BstV1I GCAGC 4 cut(s) 46, 709, 1165, 1175
BstV2I GAAGAC 3 cut(s) 11, 387, 630
BstX2I RGATCY 1 cut(s) 341
BstYI RGATCY 1 cut(s) 341
BsuI GTATCC 1 cut(s) 491
BsuRI GGCC 5 cut(s) 59, 65, 354, 377, 964
BtgI CCRYGG 3 cut(s) 54, 60, 149
BtgZI GCGATG 1 cut(s) 370
BtsCI GGATG 7 cut(s) 301, 520, 827, 874, 1126, 1150, 1198
Cac8I GCNNGC 3 cut(s) 118, 1076, 1080
CfoI GCGC 3 cut(s) 453, 479, 937
CseI GACGC 2 cut(s) 40, 293
Csp6I GTAC 2 cut(s) 415, 638
CviAII CATG 6 cut(s) 61, 150, 310, 463, 628, 793
CviQI GTAC 2 cut(s) 415, 638
DdeI CTNAG 2 cut(s) 224, 540
DpnI GATC 4 cut(s) 343, 444, 558, 717
DpnII GATC 4 cut(s) 341, 442, 556, 715
EaeI YGGCCR 3 cut(s) 57, 63, 375
Eam1104I CTCTTC 1 cut(s) 1181
EarI CTCTTC 1 cut(s) 1181
Ecl136II GAGCTC 1 cut(s) 295
Eco130I CCWWGG 2 cut(s) 60, 149
Eco147I AGGCCT 1 cut(s) 964
Eco24I GRGCYC 1 cut(s) 297
Eco53kI GAGCTC 1 cut(s) 295
EcoICRI GAGCTC 1 cut(s) 295
EcoRI GAATTC 1 cut(s) 327
EcoRII CCWGG 2 cut(s) 510, 1200
EcoT14I CCWWGG 2 cut(s) 60, 149
EcoT38I GRGCYC 1 cut(s) 297
ErhI CCWWGG 2 cut(s) 60, 149
Esp3I CGTCTC 1 cut(s) 435
FaeI CATG 6 cut(s) 64, 153, 313, 466, 631, 796
FaqI GGGAC 2 cut(s) 257, 1184
FatI CATG 6 cut(s) 60, 149, 309, 462, 627, 792
FauI CCCGC 2 cut(s) 81, 125
FblI GTMKAC 3 cut(s) 90, 404, 1135
Fnu4HI GCNGC 6 cut(s) 35, 723, 785, 1072, 1154, 1164
FokI GGATG 7 cut(s) 288, 527, 834, 881, 1113, 1157, 1205
FriOI GRGCYC 1 cut(s) 297
Fsp4HI GCNGC 6 cut(s) 35, 723, 785, 1072, 1154, 1164
FspBI CTAG 1 cut(s) 23
FspI TGCGCA 1 cut(s) 936
GlaI GCGC 3 cut(s) 452, 478, 936
GluI GCNGC 6 cut(s) 35, 723, 785, 1072, 1154, 1164
HaeIII GGCC 5 cut(s) 59, 65, 354, 377, 964
HapII CCGG 3 cut(s) 77, 133, 1121
HgaI GACGC 2 cut(s) 40, 293
HhaI GCGC 3 cut(s) 453, 479, 937
Hin1I GRCGYC 1 cut(s) 285
Hin1II CATG 6 cut(s) 64, 153, 313, 466, 631, 796
Hin6I GCGC 3 cut(s) 451, 477, 935
HinP1I GCGC 3 cut(s) 451, 477, 935
HincII GTYRAC 2 cut(s) 91, 405
HindII GTYRAC 2 cut(s) 91, 405
HpaII CCGG 3 cut(s) 77, 133, 1121
HphI GGTGA 4 cut(s) 541, 551, 592, 706
Hpy166II GTNNAC 5 cut(s) 91, 405, 882, 927, 1136
Hpy188I TCNGA 6 cut(s) 250, 442, 551, 577, 702, 810
Hpy188III TCNNGA 4 cut(s) 394, 770, 905, 952
Hpy8I GTNNAC 5 cut(s) 91, 405, 882, 927, 1136
Hpy99I CGWCG 7 cut(s) 34, 92, 116, 287, 293, 406, 409
HpyAV CCTTC 3 cut(s) 365, 883, 1042
HpyCH4III ACNGT 2 cut(s) 55, 931
HpyCH4IV ACGT 2 cut(s) 372, 750
HpyCH4V TGCA 7 cut(s) 143, 261, 348, 685, 725, 743, 843
HpyF10VI GCNNNNNNNGC 6 cut(s) 56, 126, 360, 433, 474, 784
HpyF3I CTNAG 2 cut(s) 224, 540
HpySE526I ACGT 2 cut(s) 372, 750
Hsp92I GRCGYC 1 cut(s) 285
Hsp92II CATG 6 cut(s) 64, 153, 313, 466, 631, 796
HspAI GCGC 3 cut(s) 451, 477, 935
Kzo9I GATC 4 cut(s) 341, 442, 556, 715
Lsp1109I GCAGC 4 cut(s) 46, 709, 1165, 1175
LweI GCATC 3 cut(s) 229, 270, 812
MaeI CTAG 1 cut(s) 23
MaeII ACGT 2 cut(s) 372, 750
MaeIII GTNAC 3 cut(s) 368, 644, 694
MalI GATC 4 cut(s) 343, 444, 558, 717
MbiI CCGCTC 1 cut(s) 675
MboI GATC 4 cut(s) 341, 442, 556, 715
MboII GAAGA 7 cut(s) 16, 392, 421, 635, 872, 957, 1198
MflI RGATCY 1 cut(s) 341
MhlI GDGCHC 1 cut(s) 297
MlsI TGGCCA 1 cut(s) 59
MluCI AATT 5 cut(s) 327, 524, 710, 920, 1217
MluNI TGGCCA 1 cut(s) 59
MlyI GAGTC 6 cut(s) 218, 239, 266, 627, 691, 917
MmeI TCCRAC 1 cut(s) 273
Mox20I TGGCCA 1 cut(s) 59
MscI TGGCCA 1 cut(s) 59
MseI TTAA 2 cut(s) 278, 1062
MslI CAYNNNNRTG 1 cut(s) 310
Msp20I TGGCCA 1 cut(s) 59
MspI CCGG 3 cut(s) 77, 133, 1121
MspR9I CCNGG 2 cut(s) 512, 1202
MvaI CCWGG 2 cut(s) 512, 1202
MvnI CGCG 5 cut(s) 333, 453, 479, 990, 1071
MwoI GCNNNNNNNGC 6 cut(s) 56, 126, 360, 433, 474, 784
NcoI CCATGG 2 cut(s) 60, 149
NdeII GATC 4 cut(s) 341, 442, 556, 715
NlaIII CATG 6 cut(s) 64, 153, 313, 466, 631, 796
NlaIV GGNNCC 4 cut(s) 343, 398, 704, 777
NmuCI GTSAC 1 cut(s) 694
NsbI TGCGCA 1 cut(s) 936
NspI RCATGY 2 cut(s) 466, 631
NspV TTCGAA 2 cut(s) 458, 1002
OliI CACNNNNGTG 1 cut(s) 310
PceI AGGCCT 1 cut(s) 964
PciI ACATGT 1 cut(s) 462
PcsI WCGNNNNNNNCGW 1 cut(s) 288
PfeI GAWTC 6 cut(s) 232, 420, 455, 664, 731, 948
PflFI GACNNNGTC 1 cut(s) 287
PfoI TCCNGGA 1 cut(s) 510
PkrI GCNGC 6 cut(s) 36, 724, 786, 1073, 1155, 1165
PleI GAGTC 6 cut(s) 217, 239, 266, 626, 691, 916
PpsI GAGTC 6 cut(s) 217, 239, 266, 626, 691, 916
PscI ACATGT 1 cut(s) 462
Psp124BI GAGCTC 1 cut(s) 297
Psp6I CCWGG 2 cut(s) 510, 1200
PspGI CCWGG 2 cut(s) 510, 1200
PspN4I GGNNCC 4 cut(s) 343, 398, 704, 777
PsuI RGATCY 1 cut(s) 341
PsyI GACNNNGTC 1 cut(s) 287
RsaI GTAC 2 cut(s) 416, 639
RsaNI GTAC 2 cut(s) 415, 638
RseI CAYNNNNRTG 1 cut(s) 310
SacI GAGCTC 1 cut(s) 297
SalI GTCGAC 2 cut(s) 89, 403
SaqAI TTAA 2 cut(s) 278, 1062
SatI GCNGC 6 cut(s) 35, 723, 785, 1072, 1154, 1164
Sau3AI GATC 4 cut(s) 341, 442, 556, 715
SchI GAGTC 6 cut(s) 218, 239, 266, 627, 691, 917
ScrFI CCNGG 2 cut(s) 512, 1202
SduI GDGCHC 1 cut(s) 297
SfaNI GCATC 3 cut(s) 229, 270, 812
SfcI CTRYAG 3 cut(s) 316, 1095, 1226
SfuI TTCGAA 2 cut(s) 458, 1002
SgrDI CGTCGACG 1 cut(s) 403
SmiMI CAYNNNNRTG 1 cut(s) 310
SmlI CTYRAG 2 cut(s) 595, 1206
SmoI CTYRAG 2 cut(s) 595, 1206
Sse9I AATT 5 cut(s) 327, 524, 710, 920, 1217
SseBI AGGCCT 1 cut(s) 964
SsiI CCGC 8 cut(s) 74, 118, 127, 154, 675, 785, 988, 1071
SspMI CTAG 1 cut(s) 23
SstI GAGCTC 1 cut(s) 297
StuI AGGCCT 1 cut(s) 964
StyD4I CCNGG 2 cut(s) 510, 1200
StyI CCWWGG 2 cut(s) 60, 149
TaaI ACNGT 2 cut(s) 55, 931
TaiI ACGT 2 cut(s) 375, 753
TaqII GACCGA 1 cut(s) 724
TasI AATT 5 cut(s) 327, 524, 710, 920, 1217
TatI WGTACW 2 cut(s) 414, 637
TauI GCSGC 2 cut(s) 787, 1074
TfiI GAWTC 6 cut(s) 232, 420, 455, 664, 731, 948
Tru1I TTAA 2 cut(s) 278, 1062
Tru9I TTAA 2 cut(s) 278, 1062
TseFI GTSAC 1 cut(s) 694
TseI GCWGC 4 cut(s) 34, 722, 1153, 1163
Tsp45I GTSAC 1 cut(s) 694
TspDTI ATGAA 4 cut(s) 17, 560, 873, 1115
Tth111I GACNNNGTC 1 cut(s) 287
XapI RAATTY 1 cut(s) 327
XceI RCATGY 2 cut(s) 466, 631
XmiI GTMKAC 3 cut(s) 90, 404, 1135
XspI CTAG 1 cut(s) 23
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.