Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0004460

Physical Location & Seq

Genomic Coordinates Reverse (-)

31830927 .. 31832366

Gene Structure 1440 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g32420.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1230 bp

ATGAAGACTCCAAAATCCACCGTAGATACCACGCAGCTTCAAATCCAAGCATCCATGGCCATGGCCGAACTCCCGCCGGAAGTAATCGTCGACATACTCTCTCGTTTACCCGTCTGCCTCCTCCTCCGTTTCCGGTCGATCGCAAAACCATGGCGATCGCTCATCGACAGCTCATACTTCGTCGATCTCCACCTCACGCAATCGGCAGAGTCCAAATCGCATCTCTGTTTGATTCTCAGAAAGGACTCCGATCTCTACTGCATCAGTTTCGATTCTTTAAACGACGCCGTCGAGCTCAATCATCCACTGATGTGTTACAGCAATCGGATTCGCGTGCTGGGATCCTGCAACGGCCTCCTGTGCATCTGTAACGTGGCTGAAGATATCGCTTTCTGGAACCCTTCGACGAAGAAATACAGAATCTTGCCCTCACTGCCATCAGATCGAAAGCGCGATTCGAATATGTGTTTATGTGGAGCTAGGGTTTATGGTCTCGGATATGACGCCGTTCACGATGATTATAAACTGGTGAGGATTTCTCAGTTTATTGGATTAGATTACCTGTCGTTTGTGTCTGAGGTGAGGGTTTATAGCCTGAGAAACAACGCGTGGAAGCGACTCGAAGACATGCCTTATGTGCTCTGTTACACACGAAAAATGGGTATTCTTGTTAACGGTTGTGTGCATTGGGTGGTAACTCGGAACCTCGAATTAGATCAACATCCAACGGAATTGGTCATTGCATTTGACGTTACAAATGAGACTTGTCGTGAGGTGCCTATGCCGCAAAACATGGACAAGAAGTGTCAGATTGATGTGGGATACTTGGGAGGGTGTCTTTGCATTGTAGCTAAATATGAAGATAAGGGTGTTGATGTGTGGACATTGAAGGAGTATGGGGTTAAAGAGTCTTGGAGTAAATTGTTTACCGTATCGCAAACTCAAAGAATCAAGAGTGTTAGACCTTTGGTGTATTCGAAGAATGGCAGCGAAGTTTTGTTCGAACAAGACCACGAAAATCTCGCTTGGTTTGACCTGAAAAGCCAGAGGGTCAAGAGTGTTAAGGTCCGTGGCTTGCCAGATCTATTTGAGGCTGTAGTTTGTATGGAAAGCCTTGTTTCGGTTCATCCTTGTAGACGAGAGGATAAGAAAAAGCAGGAAGCAGCAGGGGACGTGAAGAATAAGAAGAGGGATGATTTCCTTTCTCAAGGCTTCAAATTGGTGCTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBA_1

Protein Analysis

410

Amino Acids

46.8

Weight (kDa)

8.35

Isoelectric Point (pI)

36.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	23 - 60	6.4e-07	F-box domain
FBA_3	PF08268	76 - 362	1.5e-23	F-box associated beta propeller domain
FBA_1	PF07734	78 - 351	3e-27	F-box associated beta propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004460)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G12560 AT4G12560 AT4G12560 AT4G22390 AT4G22390
fragaria_vesca	FvH4_3g00900 FvH4_3g00900
malus_domestica	MD05G1358500.v1.1 MD10G1332600.v1.1
prunus_persica	Prupe.4G009600_v2.0.a1 Prupe.4G009600_v2.0.a1 Prupe.4G009600_v2.0.a1 Prupe.4G009600_v2.0.a1 Prupe.4G009600_v2.0.a1 Prupe.4G009600_v2.0.a1 Prupe.4G009600_v2.0.a1 Prupe.4G009600_v2.0.a1 Prupe.4G009600_v2.0.a1
pyrus_communis	pycom05g32420 pycom10g28200
rosa_chinensis	RchiOBHm_Chr5g0001381
rosa_laevigata	RLG00000030926
rosa_multiflora	Rmu_sc0001706.1_g000001 Rmu_sc0003749.1_g000016 Rmu_sc0016478.1_g000001
rosa_roxburghii	Rroxscaffold_1G00074980
rosa_rugosa	Rorug04G0390300
rosa_samantha	Rh5AG010700 Rh5BG013400 Rh5CG011700 Rh5DG011100
rosa_wichuraiana	Rw5G001020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	522
AccB1I	GGYRCC	1 cut(s)	775
AccI	GTMKAC	2 cut(s)	90, 1135
AccII	CGCG	3 cut(s)	333, 453, 608
AciI	CCGC	2 cut(s)	74, 785
AclWI	GGATC	2 cut(s)	336, 349
AcoI	YGGCCR	2 cut(s)	57, 63
AcuI	CTGAAG	1 cut(s)	399
AcyI	GRCGYC	2 cut(s)	285, 504
AfiI	CCNNNNNNNGG	1 cut(s)	1120
AflIII	ACRYGT	1 cut(s)	606
AgsI	TTSAA	3 cut(s)	41, 889, 1216
AjiI	CACGTC	1 cut(s)	1174
AleI	CACNNNNGTG	1 cut(s)	310
AluBI	AGCT	5 cut(s)	37, 171, 295, 479, 851
AluI	AGCT	5 cut(s)	37, 171, 295, 479, 851
Alw21I	GWGCWC	2 cut(s)	297, 642
Alw26I	GTCTC	2 cut(s)	497, 755
AlwI	GGATC	2 cut(s)	336, 349
AoxI	GGCC	3 cut(s)	57, 63, 352
ApeKI	GCWGC	3 cut(s)	34, 987, 1163
AsiSI	GCGATCGC	1 cut(s)	158
AspLEI	GCGC	1 cut(s)	453
AspS9I	GGNCC	1 cut(s)	1066
AsuHPI	GGTGA	2 cut(s)	541, 592
AsuII	TTCGAA	3 cut(s)	458, 977, 1002
AvaII	GGWCC	1 cut(s)	1066
BalI	TGGCCA	1 cut(s)	59
BamHI	GGATCC	1 cut(s)	341
BanI	GGYRCC	1 cut(s)	775
BanII	GRGCYC	1 cut(s)	297
BbsI	GAAGAC	2 cut(s)	11, 630
Bbv12I	GWGCWC	2 cut(s)	297, 642
BbvI	GCAGC	3 cut(s)	46, 999, 1175
BccI	CCATC	1 cut(s)	445
BceAI	ACGGC	3 cut(s)	272, 367, 491
BcgI	CGANNNNNNTGC	2 cut(s)	250, 284
BciVI	GTATCC	1 cut(s)	815
BcoDI	GTCTC	2 cut(s)	497, 755
BfaI	CTAG	1 cut(s)	480
BfmI	CTRYAG	2 cut(s)	1095, 1226
BfuI	GTATCC	1 cut(s)	815
BglII	AGATCT	1 cut(s)	1081
BisI	GCNGC	4 cut(s)	35, 785, 988, 1164
BlsI	GCNGC	4 cut(s)	36, 786, 989, 1165
Bme18I	GGWCC	1 cut(s)	1066
BmgBI	CACGTC	1 cut(s)	1174
BmgT120I	GGNCC	1 cut(s)	1066
BmiI	GGNNCC	4 cut(s)	343, 398, 704, 777
BmsI	GCATC	4 cut(s)	59, 229, 270, 372
BpiI	GAAGAC	2 cut(s)	11, 630
BplI	GAGNNNNNCTC	2 cut(s)	523, 555
Bpu14I	TTCGAA	3 cut(s)	458, 977, 1002
BpuEI	CTTGAG	1 cut(s)	1191
BsaBI	GATNNNNATC	1 cut(s)	720
BsaHI	GRCGYC	2 cut(s)	285, 504
BsaI	GGTCTC	1 cut(s)	497
BsaJI	CCNNGG	4 cut(s)	54, 60, 149, 1069
BsaWI	WCCGGW	1 cut(s)	132
BsaXI	ACNNNNNCTCC	2 cut(s)	468, 498
Bsc4I	CCNNNNNNNGG	1 cut(s)	1120
Bse1I	ACTGG	1 cut(s)	531
Bse3DI	GCAATG	1 cut(s)	738
Bse8I	GATNNNNATC	1 cut(s)	720
BseDI	CCNNGG	4 cut(s)	54, 60, 149, 1069
BseGI	GGATG	5 cut(s)	50, 301, 721, 1126, 1198
BseJI	GATNNNNATC	1 cut(s)	720
BseLI	CCNNNNNNNGG	1 cut(s)	1120
BseMI	GCAATG	1 cut(s)	738
BseMII	CTCAG	4 cut(s)	250, 554, 567, 587
BseNI	ACTGG	1 cut(s)	531
BseRI	GAGGAG	2 cut(s)	110, 113
BseXI	GCAGC	3 cut(s)	46, 999, 1175
BseYI	CCCAGC	1 cut(s)	337
Bsh1236I	CGCG	3 cut(s)	333, 453, 608
Bsh1285I	CGRYCG	3 cut(s)	137, 141, 158
BshFI	GGCC	3 cut(s)	59, 65, 354
BshNI	GGYRCC	1 cut(s)	775
BsiEI	CGRYCG	3 cut(s)	137, 141, 158
BsiHKAI	GWGCWC	2 cut(s)	297, 642
BsiSI	CCGG	2 cut(s)	77, 133
BslFI	GGGAC	1 cut(s)	1184
BslI	CCNNNNNNNGG	1 cut(s)	1120
BsmAI	GTCTC	2 cut(s)	497, 755
BsmFI	GGGAC	1 cut(s)	1184
BsnI	GGCC	3 cut(s)	59, 65, 354
Bso31I	GGTCTC	1 cut(s)	497
Bsp119I	TTCGAA	3 cut(s)	458, 977, 1002
Bsp1286I	GDGCHC	2 cut(s)	297, 642
Bsp143I	GATC	8 cut(s)	138, 155, 184, 250, 341, 442, 715, 1081
Bsp19I	CCATGG	3 cut(s)	54, 60, 149
BspACI	CCGC	2 cut(s)	74, 785
BspANI	GGCC	3 cut(s)	59, 65, 354
BspCNI	CTCAG	4 cut(s)	249, 553, 568, 588
BspFNI	CGCG	3 cut(s)	333, 453, 608
BspLI	GGNNCC	4 cut(s)	343, 398, 704, 777
BspPI	GGATC	2 cut(s)	336, 349
BspT104I	TTCGAA	3 cut(s)	458, 977, 1002
BspT107I	GGYRCC	1 cut(s)	775
BspTNI	GGTCTC	1 cut(s)	497
BsrDI	GCAATG	1 cut(s)	738
BsrI	ACTGG	1 cut(s)	531
BssECI	CCNNGG	4 cut(s)	54, 60, 149, 1069
BssMI	GATC	8 cut(s)	138, 155, 184, 250, 341, 442, 715, 1081
BssNI	GRCGYC	2 cut(s)	285, 504
BssT1I	CCWWGG	3 cut(s)	54, 60, 149
Bst4CI	ACNGT	3 cut(s)	22, 677, 931
Bst6I	CTCTTC	1 cut(s)	1181
BstACI	GRCGYC	2 cut(s)	285, 504
BstBI	TTCGAA	3 cut(s)	458, 977, 1002
BstC8I	GCNNGC	2 cut(s)	335, 1076
BstDEI	CTNAG	4 cut(s)	236, 540, 576, 596
BstDSI	CCRYGG	4 cut(s)	54, 60, 149, 1069
BstF5I	GGATG	5 cut(s)	50, 301, 721, 1126, 1198
BstFNI	CGCG	3 cut(s)	333, 453, 608
BstHHI	GCGC	1 cut(s)	453
BstKTI	GATC	8 cut(s)	141, 158, 187, 253, 344, 445, 718, 1084
BstMAI	GTCTC	2 cut(s)	497, 755
BstMBI	GATC	8 cut(s)	138, 155, 184, 250, 341, 442, 715, 1081
BstMCI	CGRYCG	3 cut(s)	137, 141, 158
BstMWI	GCNNNNNNNGC	5 cut(s)	56, 360, 433, 637, 784
BstNSI	RCATGY	1 cut(s)	631
BstSFI	CTRYAG	2 cut(s)	1095, 1226
BstUI	CGCG	3 cut(s)	333, 453, 608
BstV1I	GCAGC	3 cut(s)	46, 999, 1175
BstV2I	GAAGAC	2 cut(s)	11, 630
BstX2I	RGATCY	2 cut(s)	341, 1081
BstXI	CCANNNNNNTGG	1 cut(s)	61
BstYI	RGATCY	2 cut(s)	341, 1081
BsuI	GTATCC	1 cut(s)	815
BsuRI	GGCC	3 cut(s)	59, 65, 354
BtgI	CCRYGG	4 cut(s)	54, 60, 149, 1069
BtrI	CACGTC	1 cut(s)	1174
BtsCI	GGATG	5 cut(s)	50, 301, 721, 1126, 1198
BtsI	GCAGTG	1 cut(s)	431
BtsIMutI	CAGTG	2 cut(s)	305, 431
Cac8I	GCNNGC	2 cut(s)	335, 1076
CfoI	GCGC	1 cut(s)	453
Cfr13I	GGNCC	1 cut(s)	1066
CseI	GACGC	2 cut(s)	293, 512
CviAII	CATG	5 cut(s)	55, 61, 150, 628, 793
DdeI	CTNAG	4 cut(s)	236, 540, 576, 596
DpnI	GATC	8 cut(s)	140, 157, 186, 252, 343, 444, 717, 1083
DpnII	GATC	8 cut(s)	138, 155, 184, 250, 341, 442, 715, 1081
DraI	TTTAAA	1 cut(s)	279
EaeI	YGGCCR	2 cut(s)	57, 63
Eam1104I	CTCTTC	1 cut(s)	1181
EarI	CTCTTC	1 cut(s)	1181
Ecl136II	GAGCTC	1 cut(s)	295
Eco130I	CCWWGG	3 cut(s)	54, 60, 149
Eco24I	GRGCYC	1 cut(s)	297
Eco31I	GGTCTC	1 cut(s)	497
Eco32I	GATATC	1 cut(s)	385
Eco47I	GGWCC	1 cut(s)	1066
Eco53kI	GAGCTC	1 cut(s)	295
Eco57I	CTGAAG	1 cut(s)	399
EcoICRI	GAGCTC	1 cut(s)	295
EcoRV	GATATC	1 cut(s)	385
EcoT14I	CCWWGG	3 cut(s)	54, 60, 149
EcoT38I	GRGCYC	1 cut(s)	297
ErhI	CCWWGG	3 cut(s)	54, 60, 149
FaeI	CATG	5 cut(s)	58, 64, 153, 631, 796
FaqI	GGGAC	1 cut(s)	1184
FatI	CATG	5 cut(s)	54, 60, 149, 627, 792
FauI	CCCGC	1 cut(s)	81
FblI	GTMKAC	2 cut(s)	90, 1135
Fnu4HI	GCNGC	4 cut(s)	35, 785, 988, 1164
FokI	GGATG	5 cut(s)	37, 288, 708, 1113, 1205
FriOI	GRGCYC	1 cut(s)	297
Fsp4HI	GCNGC	4 cut(s)	35, 785, 988, 1164
FspBI	CTAG	1 cut(s)	480
GlaI	GCGC	1 cut(s)	452
GluI	GCNGC	4 cut(s)	35, 785, 988, 1164
GsaI	CCCAGC	1 cut(s)	341
HaeIII	GGCC	3 cut(s)	59, 65, 354
HapII	CCGG	2 cut(s)	77, 133
HgaI	GACGC	2 cut(s)	293, 512
HhaI	GCGC	1 cut(s)	453
Hin1I	GRCGYC	2 cut(s)	285, 504
Hin1II	CATG	5 cut(s)	58, 64, 153, 631, 796
Hin6I	GCGC	1 cut(s)	451
HinP1I	GCGC	1 cut(s)	451
HincII	GTYRAC	2 cut(s)	91, 673
HindII	GTYRAC	2 cut(s)	91, 673
HpaI	GTTAAC	1 cut(s)	673
HpaII	CCGG	2 cut(s)	77, 133
HphI	GGTGA	2 cut(s)	541, 592
Hpy166II	GTNNAC	7 cut(s)	91, 107, 511, 673, 882, 927, 1136
Hpy188I	TCNGA	8 cut(s)	239, 250, 327, 442, 497, 577, 702, 810
Hpy188III	TCNNGA	5 cut(s)	394, 512, 770, 952, 1054
Hpy8I	GTNNAC	7 cut(s)	91, 107, 511, 673, 882, 927, 1136
Hpy99I	CGWCG	5 cut(s)	92, 185, 287, 293, 409
HpyAV	CCTTC	2 cut(s)	411, 883
HpyCH4III	ACNGT	3 cut(s)	22, 677, 931
HpyCH4IV	ACGT	3 cut(s)	372, 750, 1173
HpyCH4V	TGCA	6 cut(s)	261, 348, 363, 685, 743, 843
HpyF10VI	GCNNNNNNNGC	5 cut(s)	56, 360, 433, 637, 784
HpyF3I	CTNAG	4 cut(s)	236, 540, 576, 596
HpySE526I	ACGT	3 cut(s)	372, 750, 1173
Hsp92I	GRCGYC	2 cut(s)	285, 504
Hsp92II	CATG	5 cut(s)	58, 64, 153, 631, 796
HspAI	GCGC	1 cut(s)	451
KspAI	GTTAAC	1 cut(s)	673
Kzo9I	GATC	8 cut(s)	138, 155, 184, 250, 341, 442, 715, 1081
LmnI	GCTCC	1 cut(s)	476
Lsp1109I	GCAGC	3 cut(s)	46, 999, 1175
LweI	GCATC	4 cut(s)	59, 229, 270, 372
MaeI	CTAG	1 cut(s)	480
MaeII	ACGT	3 cut(s)	372, 750, 1173
MaeIII	GTNAC	5 cut(s)	314, 368, 644, 694, 751
MalI	GATC	8 cut(s)	140, 157, 186, 252, 343, 444, 717, 1083
MboI	GATC	8 cut(s)	138, 155, 184, 250, 341, 442, 715, 1081
MboII	GAAGA	8 cut(s)	16, 392, 421, 635, 872, 991, 1189, 1198
MflI	RGATCY	2 cut(s)	341, 1081
MhlI	GDGCHC	2 cut(s)	297, 642
MlsI	TGGCCA	1 cut(s)	59
MluCI	AATT	4 cut(s)	710, 731, 920, 1217
MluI	ACGCGT	1 cut(s)	606
MluNI	TGGCCA	1 cut(s)	59
MlyI	GAGTC	4 cut(s)	218, 239, 612, 917
MmeI	TCCRAC	1 cut(s)	749
Mox20I	TGGCCA	1 cut(s)	59
MscI	TGGCCA	1 cut(s)	59
MseI	TTAA	4 cut(s)	278, 672, 903, 1062
MslI	CAYNNNNRTG	2 cut(s)	59, 310
Msp20I	TGGCCA	1 cut(s)	59
MspI	CCGG	2 cut(s)	77, 133
MvnI	CGCG	3 cut(s)	333, 453, 608
MwoI	GCNNNNNNNGC	5 cut(s)	56, 360, 433, 637, 784
NcoI	CCATGG	3 cut(s)	54, 60, 149
NdeII	GATC	8 cut(s)	138, 155, 184, 250, 341, 442, 715, 1081
NlaIII	CATG	5 cut(s)	58, 64, 153, 631, 796
NlaIV	GGNNCC	4 cut(s)	343, 398, 704, 777
NspI	RCATGY	1 cut(s)	631
NspV	TTCGAA	3 cut(s)	458, 977, 1002
OliI	CACNNNNGTG	1 cut(s)	310
PcsI	WCGNNNNNNNCGW	2 cut(s)	288, 510
PfeI	GAWTC	6 cut(s)	232, 272, 328, 420, 455, 948
PflFI	GACNNNGTC	1 cut(s)	287
PkrI	GCNGC	4 cut(s)	36, 786, 989, 1165
Ple19I	CGATCG	2 cut(s)	141, 158
PleI	GAGTC	4 cut(s)	217, 239, 612, 916
PpsI	GAGTC	4 cut(s)	217, 239, 612, 916
PsiI	TTATAA	1 cut(s)	522
Psp124BI	GAGCTC	1 cut(s)	297
PspFI	CCCAGC	1 cut(s)	337
PspN4I	GGNNCC	4 cut(s)	343, 398, 704, 777
PspPI	GGNCC	1 cut(s)	1066
PsuI	RGATCY	2 cut(s)	341, 1081
PsyI	GACNNNGTC	1 cut(s)	287
PvuI	CGATCG	2 cut(s)	141, 158
RgaI	GCGATCGC	1 cut(s)	158
RseI	CAYNNNNRTG	2 cut(s)	59, 310
SacI	GAGCTC	1 cut(s)	297
SalI	GTCGAC	1 cut(s)	89
SaqAI	TTAA	4 cut(s)	278, 672, 903, 1062
SatI	GCNGC	4 cut(s)	35, 785, 988, 1164
Sau3AI	GATC	8 cut(s)	138, 155, 184, 250, 341, 442, 715, 1081
Sau96I	GGNCC	1 cut(s)	1066
SchI	GAGTC	4 cut(s)	218, 239, 612, 917
SduI	GDGCHC	2 cut(s)	297, 642
SfaAI	GCGATCGC	1 cut(s)	158
SfaNI	GCATC	4 cut(s)	59, 229, 270, 372
SfcI	CTRYAG	2 cut(s)	1095, 1226
SfuI	TTCGAA	3 cut(s)	458, 977, 1002
SgfI	GCGATCGC	1 cut(s)	158
SinI	GGWCC	1 cut(s)	1066
SmiMI	CAYNNNNRTG	2 cut(s)	59, 310
SmlI	CTYRAG	1 cut(s)	1206
SmoI	CTYRAG	1 cut(s)	1206
Sse9I	AATT	4 cut(s)	710, 731, 920, 1217
SsiI	CCGC	2 cut(s)	74, 785
SspMI	CTAG	1 cut(s)	480
SstI	GAGCTC	1 cut(s)	297
StyI	CCWWGG	3 cut(s)	54, 60, 149
TaaI	ACNGT	3 cut(s)	22, 677, 931
TaiI	ACGT	3 cut(s)	375, 753, 1176
TasI	AATT	4 cut(s)	710, 731, 920, 1217
TauI	GCSGC	1 cut(s)	787
TfiI	GAWTC	6 cut(s)	232, 272, 328, 420, 455, 948
Tru1I	TTAA	4 cut(s)	278, 672, 903, 1062
Tru9I	TTAA	4 cut(s)	278, 672, 903, 1062
TscAI	CASTG	2 cut(s)	312, 438
TseI	GCWGC	3 cut(s)	34, 987, 1163
TspDTI	ATGAA	3 cut(s)	17, 873, 1115
TspGWI	ACGGA	3 cut(s)	116, 743, 1058
TspRI	CASTG	2 cut(s)	312, 438
Tth111I	GACNNNGTC	1 cut(s)	287
VpaK11BI	GGWCC	1 cut(s)	1066
XceI	RCATGY	1 cut(s)	631
XmiI	GTMKAC	2 cut(s)	90, 1135
XspI	CTAG	1 cut(s)	480

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.