Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0004460

Physical Location & Seq

Genomic Coordinates Forward (+)

471293 .. 476034

Gene Structure 4742 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G009600.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1221 bp

ATGAAGACTCCAACATCTAGCAAAGAGACACAGCTTGAAATCCAAGCAATCATGGCGGAACTCCCACCTGAGGTCATCATCAACATACTCTCTCGTCTACAAGTTGGGCGCCTCCTCTGCTTCAGGTCCATTGCCAAAACATGGCGTTCCCTCATCGACAGCCCCTATTTCGTCGATCTCCACCTTGAAAAATCCGCAGAAGCCAAATCCCATCTCAGTTTGATTCTCAGAAAGGACTCTGACCTCTATTACATCAATTTCGATTCCTTAGACGACGCCGTCGAGCTCAATCACCCCCTCATGTGTTACAGCAATCGAATTCGCGTCTTGGGCTCCTGCAACGGCCTCTTGTGCATTTGTAATGTGGCCGAAGACATCGCTCTCTGGAATCCATCTACCAAAAAGTACAGGGTATTGCCCTCTCTGCCCTCCGATCGAAAGCGCGACTCGGGCATGTGTTTGTGTGGTGCGAGGGTTTATGGGCTCGGATACGACGCCGGTCACGATGACTATAAGTTGGTCAGGATTTCCCAGTTCATCGGATTGGATTACCTCTCGTTTGAGTCTGAGGTGAAGGTTTATAGCCTCAGAAACAATGCGTGGAAGAAAGTCGAAGACATGCCTTATGTGCTCTGTTATACACGAAAAATGGGTATTCTTGTGAGTGGTTGTGTGCATTGGGTGGTGACCCGGCAGCTTGAATTGGATCAACTTGCAACCGAATTGGTCATTGCCTTTGACATTGTGAAAGAGACTTTTCGGGAGGTGCCGATGCCGGAGAGCATGAACAGGAAATGCCAGATTGATGTGGGGTACTTGGGAGGGTGTCTTTGTATTGTAGCTAAATATGAAGATGCGGGTGTTGATGTTTGGACGCTAAAGGAGTATGGGGTTAAGGAGTCATGGAGTAAGTTGCTTACCTTAACGCAGGCTCGAAGGATTAAGAGTGTTAGGCCTCTGGTGTATTCAAAAAATGGCCATGAAGTTTTGTTGGAACAAGACCACGAAAATCTTGTTTGGTTTGACTTGAAAAGTCAGAGGGTCAAGAGTGTTAAGGTTCGCGGTTTGCCGGATTTGTTTGAGGCTGTAGTTTGTATGGAAAGCCTTGTTTCAGTTCATCCTAGTAGACGAGATGATAGGAAAAAGCAGGAATCTGTAGGGGGGAAGAAGAATAAGAAGAGGGATGATTTCCTGGCTGAAGGCTTCAAGTTGGTGCTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBA_1

Protein Analysis

407

Amino Acids

46.41

Weight (kDa)

8.44

Isoelectric Point (pI)

38.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004460)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G12560 AT4G12560 AT4G12560 AT4G22390 AT4G22390
fragaria_vesca	FvH4_3g00900 FvH4_3g00900
malus_domestica	MD05G1358500.v1.1 MD10G1332600.v1.1
prunus_persica	Prupe.4G009600_v2.0.a1 Prupe.4G009600_v2.0.a1 Prupe.4G009600_v2.0.a1 Prupe.4G009600_v2.0.a1 Prupe.4G009600_v2.0.a1 Prupe.4G009600_v2.0.a1 Prupe.4G009600_v2.0.a1 Prupe.4G009600_v2.0.a1 Prupe.4G009600_v2.0.a1
pyrus_communis	pycom05g32420 pycom10g28200
rosa_chinensis	RchiOBHm_Chr5g0001381
rosa_laevigata	RLG00000030926
rosa_multiflora	Rmu_sc0001706.1_g000001 Rmu_sc0003749.1_g000016 Rmu_sc0016478.1_g000001
rosa_roxburghii	Rroxscaffold_1G00074980
rosa_rugosa	Rorug04G0390300
rosa_samantha	Rh5AG010700 Rh5BG013400 Rh5CG011700 Rh5DG011100
rosa_wichuraiana	Rw5G001020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	278
AccB1I	GGYRCC	2 cut(s)	108, 766
AccB7I	CCANNNNNTGG	1 cut(s)	141
AccI	GTMKAC	2 cut(s)	97, 1126
AccII	CGCG	3 cut(s)	324, 444, 1062
AciI	CCGC	4 cut(s)	56, 195, 857, 1062
AclWI	GGATC	1 cut(s)	714
AcoI	YGGCCR	2 cut(s)	366, 976
AcsI	RAATTY	1 cut(s)	318
AcuI	CTGAAG	2 cut(s)	106, 1218
AcyI	GRCGYC	3 cut(s)	109, 276, 495
AfaI	GTAC	2 cut(s)	407, 815
AfiI	CCNNNNNNNGG	2 cut(s)	70, 141
AgsI	TTSAA	6 cut(s)	38, 188, 701, 969, 1030, 1207
AjnI	CCWGG	1 cut(s)	1191
AluBI	AGCT	4 cut(s)	34, 286, 697, 842
AluI	AGCT	4 cut(s)	34, 286, 697, 842
Alw21I	GWGCWC	2 cut(s)	288, 633
Alw26I	GTCTC	2 cut(s)	20, 746
AlwI	GGATC	1 cut(s)	714
Ama87I	CYCGRG	1 cut(s)	448
AoxI	GGCC	4 cut(s)	343, 366, 953, 976
ApeKI	GCWGC	1 cut(s)	694
ApoI	RAATTY	1 cut(s)	318
AspLEI	GCGC	2 cut(s)	111, 444
AspS9I	GGNCC	1 cut(s)	126
AsuC2I	CCSGG	1 cut(s)	691
AsuHPI	GGTGA	3 cut(s)	284, 583, 697
AvaI	CYCGRG	1 cut(s)	448
AvaII	GGWCC	1 cut(s)	126
AxyI	CCTNAGG	1 cut(s)	69
BalI	TGGCCA	1 cut(s)	978
BanI	GGYRCC	2 cut(s)	108, 766
BanII	GRGCYC	3 cut(s)	288, 335, 486
BbsI	GAAGAC	3 cut(s)	11, 378, 621
Bbv12I	GWGCWC	2 cut(s)	288, 633
BbvI	GCAGC	1 cut(s)	706
BccI	CCATC	2 cut(s)	219, 400
BceAI	ACGGC	2 cut(s)	263, 358
BciT130I	CCWGG	1 cut(s)	1193
BciVI	GTATCC	1 cut(s)	482
BcnI	CCSGG	1 cut(s)	691
BcoDI	GTCTC	2 cut(s)	20, 746
BfaI	CTAG	2 cut(s)	18, 1122
BfmI	CTRYAG	2 cut(s)	1086, 1155
BfoI	RGCGCY	1 cut(s)	112
BfuI	GTATCC	1 cut(s)	482
BisI	GCNGC	1 cut(s)	695
BlsI	GCNGC	1 cut(s)	696
Bme1390I	CCNGG	2 cut(s)	691, 1193
Bme18I	GGWCC	1 cut(s)	126
BmeT110I	CYCGRG	1 cut(s)	448
BmgT120I	GGNCC	1 cut(s)	126
BmiI	GGNNCC	3 cut(s)	110, 334, 768
BmrFI	CCNGG	2 cut(s)	691, 1193
BmrI	ACTGGG	1 cut(s)	526
BmsI	GCATC	2 cut(s)	762, 844
BmuI	ACTGGG	1 cut(s)	526
BoxI	GACNNNNGTC	1 cut(s)	498
BpiI	GAAGAC	3 cut(s)	11, 378, 621
BpuMI	CCSGG	1 cut(s)	691
BsaHI	GRCGYC	3 cut(s)	109, 276, 495
Bsc4I	CCNNNNNNNGG	2 cut(s)	70, 141
Bse118I	RCCGGY	1 cut(s)	497
Bse1I	ACTGG	1 cut(s)	532
Bse21I	CCTNAGG	1 cut(s)	69
Bse3DI	GCAATG	2 cut(s)	129, 729
BseBI	CCWGG	1 cut(s)	1193
BseGI	GGATG	2 cut(s)	1117, 1189
BseLI	CCNNNNNNNGG	2 cut(s)	70, 141
BseMI	GCAATG	2 cut(s)	129, 729
BseMII	CTCAG	5 cut(s)	60, 229, 241, 558, 601
BseNI	ACTGG	1 cut(s)	532
BseRI	GAGGAG	1 cut(s)	104
BseXI	GCAGC	1 cut(s)	706
Bsh1236I	CGCG	3 cut(s)	324, 444, 1062
Bsh1285I	CGRYCG	1 cut(s)	436
BshFI	GGCC	4 cut(s)	345, 368, 955, 978
BshNI	GGYRCC	2 cut(s)	108, 766
BsiEI	CGRYCG	1 cut(s)	436
BsiHKAI	GWGCWC	2 cut(s)	288, 633
BsiHKCI	CYCGRG	1 cut(s)	448
BsiSI	CCGG	4 cut(s)	498, 691, 776, 1070
BslI	CCNNNNNNNGG	2 cut(s)	70, 141
BsmAI	GTCTC	2 cut(s)	20, 746
BsnI	GGCC	4 cut(s)	345, 368, 955, 978
BsoBI	CYCGRG	1 cut(s)	448
Bsp1286I	GDGCHC	4 cut(s)	288, 335, 486, 633
Bsp143I	GATC	3 cut(s)	175, 433, 706
BspACI	CCGC	4 cut(s)	56, 195, 857, 1062
BspANI	GGCC	4 cut(s)	345, 368, 955, 978
BspCNI	CTCAG	5 cut(s)	61, 228, 240, 559, 600
BspFNI	CGCG	3 cut(s)	324, 444, 1062
BspLI	GGNNCC	3 cut(s)	110, 334, 768
BspPI	GGATC	1 cut(s)	714
BspT107I	GGYRCC	2 cut(s)	108, 766
BsrDI	GCAATG	2 cut(s)	129, 729
BsrFI	RCCGGY	1 cut(s)	497
BsrI	ACTGG	1 cut(s)	532
BssAI	RCCGGY	1 cut(s)	497
BssMI	GATC	3 cut(s)	175, 433, 706
BssNI	GRCGYC	3 cut(s)	109, 276, 495
Bst2UI	CCWGG	1 cut(s)	1193
Bst6I	CTCTTC	1 cut(s)	1172
BstACI	GRCGYC	3 cut(s)	109, 276, 495
BstC8I	GCNNGC	1 cut(s)	930
BstDEI	CTNAG	6 cut(s)	69, 215, 227, 268, 567, 587
BstEII	GGTNACC	1 cut(s)	685
BstF5I	GGATG	2 cut(s)	1117, 1189
BstFNI	CGCG	3 cut(s)	324, 444, 1062
BstH2I	RGCGCY	1 cut(s)	112
BstHHI	GCGC	2 cut(s)	111, 444
BstKTI	GATC	3 cut(s)	178, 436, 709
BstMAI	GTCTC	2 cut(s)	20, 746
BstMBI	GATC	3 cut(s)	175, 433, 706
BstMCI	CGRYCG	1 cut(s)	436
BstMWI	GCNNNNNNNGC	7 cut(s)	53, 117, 330, 351, 424, 450, 628
BstNI	CCWGG	1 cut(s)	1193
BstNSI	RCATGY	2 cut(s)	457, 622
BstPAI	GACNNNNGTC	1 cut(s)	498
BstPI	GGTNACC	1 cut(s)	685
BstSCI	CCNGG	2 cut(s)	689, 1191
BstSFI	CTRYAG	2 cut(s)	1086, 1155
BstUI	CGCG	3 cut(s)	324, 444, 1062
BstV1I	GCAGC	1 cut(s)	706
BstV2I	GAAGAC	3 cut(s)	11, 378, 621
Bsu36I	CCTNAGG	1 cut(s)	69
BsuI	GTATCC	1 cut(s)	482
BsuRI	GGCC	4 cut(s)	345, 368, 955, 978
BtgZI	GCGATG	1 cut(s)	361
BtsCI	GGATG	2 cut(s)	1117, 1189
Cac8I	GCNNGC	1 cut(s)	930
CfoI	GCGC	2 cut(s)	111, 444
Cfr10I	RCCGGY	1 cut(s)	497
Cfr13I	GGNCC	1 cut(s)	126
CseI	GACGC	4 cut(s)	284, 313, 503, 883
Csp6I	GTAC	2 cut(s)	406, 814
CviAII	CATG	8 cut(s)	52, 141, 301, 454, 619, 784, 903, 980
CviQI	GTAC	2 cut(s)	406, 814
DdeI	CTNAG	6 cut(s)	69, 215, 227, 268, 567, 587
DinI	GGCGCC	1 cut(s)	110
DpnI	GATC	3 cut(s)	177, 435, 708
DpnII	GATC	3 cut(s)	175, 433, 706
DrdI	GACNNNNNNGTC	1 cut(s)	278
DseDI	GACNNNNNNGTC	1 cut(s)	278
EaeI	YGGCCR	2 cut(s)	366, 976
Eam1104I	CTCTTC	1 cut(s)	1172
EarI	CTCTTC	1 cut(s)	1172
EciI	GGCGGA	1 cut(s)	71
Ecl136II	GAGCTC	1 cut(s)	286
Eco147I	AGGCCT	1 cut(s)	955
Eco24I	GRGCYC	3 cut(s)	288, 335, 486
Eco47I	GGWCC	1 cut(s)	126
Eco53kI	GAGCTC	1 cut(s)	286
Eco57I	CTGAAG	2 cut(s)	106, 1218
Eco81I	CCTNAGG	1 cut(s)	69
Eco88I	CYCGRG	1 cut(s)	448
Eco91I	GGTNACC	1 cut(s)	685
EcoICRI	GAGCTC	1 cut(s)	286
EcoO65I	GGTNACC	1 cut(s)	685
EcoRI	GAATTC	1 cut(s)	318
EcoRII	CCWGG	1 cut(s)	1191
EcoT38I	GRGCYC	3 cut(s)	288, 335, 486
EgeI	GGCGCC	1 cut(s)	110
EheI	GGCGCC	1 cut(s)	110
FaeI	CATG	8 cut(s)	55, 144, 304, 457, 622, 787, 906, 983
FatI	CATG	8 cut(s)	51, 140, 300, 453, 618, 783, 902, 979
FauI	CCCGC	1 cut(s)	850
FblI	GTMKAC	2 cut(s)	97, 1126
Fnu4HI	GCNGC	1 cut(s)	695
FokI	GGATG	2 cut(s)	1104, 1196
FriOI	GRGCYC	3 cut(s)	288, 335, 486
Fsp4HI	GCNGC	1 cut(s)	695
FspBI	CTAG	2 cut(s)	18, 1122
GlaI	GCGC	2 cut(s)	110, 443
GluI	GCNGC	1 cut(s)	695
HaeII	RGCGCY	1 cut(s)	112
HaeIII	GGCC	4 cut(s)	345, 368, 955, 978
HapII	CCGG	4 cut(s)	498, 691, 776, 1070
HgaI	GACGC	4 cut(s)	284, 313, 503, 883
HhaI	GCGC	2 cut(s)	111, 444
Hin1I	GRCGYC	3 cut(s)	109, 276, 495
Hin1II	CATG	8 cut(s)	55, 144, 304, 457, 622, 787, 906, 983
Hin6I	GCGC	2 cut(s)	109, 442
HinP1I	GCGC	2 cut(s)	109, 442
HinfI	GANTC	9 cut(s)	7, 223, 236, 263, 388, 446, 563, 899, 1151
HpaII	CCGG	4 cut(s)	498, 691, 776, 1070
HphI	GGTGA	3 cut(s)	284, 583, 697
Hpy166II	GTNNAC	2 cut(s)	98, 1127
Hpy188I	TCNGA	8 cut(s)	230, 241, 433, 488, 542, 568, 590, 1038
Hpy188III	TCNNGA	5 cut(s)	385, 503, 523, 761, 1045
Hpy8I	GTNNAC	2 cut(s)	98, 1127
Hpy99I	CGWCG	4 cut(s)	176, 278, 284, 497
HpyAV	CCTTC	3 cut(s)	568, 930, 1193
HpyCH4V	TGCA	4 cut(s)	339, 354, 676, 716
HpyF10VI	GCNNNNNNNGC	7 cut(s)	53, 117, 330, 351, 424, 450, 628
HpyF3I	CTNAG	6 cut(s)	69, 215, 227, 268, 567, 587
Hsp92I	GRCGYC	3 cut(s)	109, 276, 495
Hsp92II	CATG	8 cut(s)	55, 144, 304, 457, 622, 787, 906, 983
HspAI	GCGC	2 cut(s)	109, 442
KasI	GGCGCC	1 cut(s)	108
Kzo9I	GATC	3 cut(s)	175, 433, 706
LmnI	GCTCC	1 cut(s)	338
Lsp1109I	GCAGC	1 cut(s)	706
LweI	GCATC	2 cut(s)	762, 844
MaeI	CTAG	2 cut(s)	18, 1122
MaeIII	GTNAC	3 cut(s)	305, 500, 685
MalI	GATC	3 cut(s)	177, 435, 708
MboI	GATC	3 cut(s)	175, 433, 706
MboII	GAAGA	8 cut(s)	16, 383, 616, 626, 863, 1177, 1180, 1189
MhlI	GDGCHC	4 cut(s)	288, 335, 486, 633
MlsI	TGGCCA	1 cut(s)	978
MluCI	AATT	4 cut(s)	256, 318, 701, 722
MluNI	TGGCCA	1 cut(s)	978
Mly113I	GGCGCC	1 cut(s)	109
MlyI	GAGTC	4 cut(s)	230, 440, 572, 908
MmeI	TCCRAC	2 cut(s)	35, 972
Mox20I	TGGCCA	1 cut(s)	978
MscI	TGGCCA	1 cut(s)	978
MseI	TTAA	4 cut(s)	894, 923, 942, 1053
Msp20I	TGGCCA	1 cut(s)	978
MspI	CCGG	4 cut(s)	498, 691, 776, 1070
MspR9I	CCNGG	2 cut(s)	691, 1193
MvaI	CCWGG	1 cut(s)	1193
MvnI	CGCG	3 cut(s)	324, 444, 1062
MwoI	GCNNNNNNNGC	7 cut(s)	53, 117, 330, 351, 424, 450, 628
NarI	GGCGCC	1 cut(s)	109
NciI	CCSGG	1 cut(s)	691
NdeII	GATC	3 cut(s)	175, 433, 706
NlaIII	CATG	8 cut(s)	55, 144, 304, 457, 622, 787, 906, 983
NlaIV	GGNNCC	3 cut(s)	110, 334, 768
NmuCI	GTSAC	2 cut(s)	500, 685
NspI	RCATGY	2 cut(s)	457, 622
PceI	AGGCCT	1 cut(s)	955
PcsI	WCGNNNNNNNCGW	2 cut(s)	279, 501
PfeI	GAWTC	4 cut(s)	223, 263, 388, 1151
PflFI	GACNNNGTC	1 cut(s)	278
PflMI	CCANNNNNTGG	1 cut(s)	141
PkrI	GCNGC	1 cut(s)	696
Ple19I	CGATCG	1 cut(s)	436
PleI	GAGTC	4 cut(s)	230, 440, 571, 907
PluTI	GGCGCC	1 cut(s)	112
PpsI	GAGTC	4 cut(s)	230, 440, 571, 907
PshAI	GACNNNNGTC	1 cut(s)	498
Psp124BI	GAGCTC	1 cut(s)	288
Psp6I	CCWGG	1 cut(s)	1191
PspEI	GGTNACC	1 cut(s)	685
PspGI	CCWGG	1 cut(s)	1191
PspN4I	GGNNCC	3 cut(s)	110, 334, 768
PspPI	GGNCC	1 cut(s)	126
PsyI	GACNNNGTC	1 cut(s)	278
PvuI	CGATCG	1 cut(s)	436
RsaI	GTAC	2 cut(s)	407, 815
RsaNI	GTAC	2 cut(s)	406, 814
SacI	GAGCTC	1 cut(s)	288
SaqAI	TTAA	4 cut(s)	894, 923, 942, 1053
SatI	GCNGC	1 cut(s)	695
Sau3AI	GATC	3 cut(s)	175, 433, 706
Sau96I	GGNCC	1 cut(s)	126
SchI	GAGTC	4 cut(s)	230, 440, 572, 908
ScrFI	CCNGG	2 cut(s)	691, 1193
SduI	GDGCHC	4 cut(s)	288, 335, 486, 633
SfaNI	GCATC	2 cut(s)	762, 844
SfcI	CTRYAG	2 cut(s)	1086, 1155
SfoI	GGCGCC	1 cut(s)	110
SinI	GGWCC	1 cut(s)	126
Sse9I	AATT	4 cut(s)	256, 318, 701, 722
SseBI	AGGCCT	1 cut(s)	955
SsiI	CCGC	4 cut(s)	56, 195, 857, 1062
SspDI	GGCGCC	1 cut(s)	108
SspMI	CTAG	2 cut(s)	18, 1122
SstI	GAGCTC	1 cut(s)	288
StuI	AGGCCT	1 cut(s)	955
StyD4I	CCNGG	2 cut(s)	689, 1191
TaqI	TCGA	8 cut(s)	156, 174, 261, 282, 316, 436, 612, 934
TasI	AATT	4 cut(s)	256, 318, 701, 722
TatI	WGTACW	1 cut(s)	405
TfiI	GAWTC	4 cut(s)	223, 263, 388, 1151
Tru1I	TTAA	4 cut(s)	894, 923, 942, 1053
Tru9I	TTAA	4 cut(s)	894, 923, 942, 1053
TseFI	GTSAC	2 cut(s)	500, 685
TseI	GCWGC	1 cut(s)	694
Tsp45I	GTSAC	2 cut(s)	500, 685
TspDTI	ATGAA	6 cut(s)	17, 526, 800, 864, 996, 1106
Tth111I	GACNNNGTC	1 cut(s)	278
Van91I	CCANNNNNTGG	1 cut(s)	141
VpaK11BI	GGWCC	1 cut(s)	126
XapI	RAATTY	1 cut(s)	318
XceI	RCATGY	2 cut(s)	457, 622
XmiI	GTMKAC	2 cut(s)	97, 1126
XspI	CTAG	2 cut(s)	18, 1122

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.