Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0016478.1

Orthogroup ID

OG0004460

Physical Location & Seq

Genomic Coordinates Reverse (-)

233 .. 1241

Gene Structure 1009 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0016478.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

atgaatgcgtggagaaaggtggatgacatgccgtatgtgctgtgttacacgcgaaaaatggggattcttgtgagtggatctgtgcattgggtggtgacgcggagtcatgaagtggatcaacccgcaaccgagttggttattggatttgatgtagagaaggagagatttggggaggtgccgatgccggagatggaccggaagtgtcagattgatgtggggtatttggaagggtgtctttgcattatagccaagtatgaagatatgggtgttgatgtttggactatcaaacagtatggggttaaggagacttggtgtaaattgtttactgtgaaacaggctcaaggggttagaaggcctaagagtattaagcctctggtttattcaaagaatcgtcgacaagttttgctggaacaaaaccatgaagatcttgtttggtttgacttggaaagtcagatggtcaataaaattaagattcgcggtttgccagatttatttgaggctatagtctgtgcggaaacccttgttccggttgaccctagtaaacgagaagacaaggaaaaagagggaaaaaagaataagaagagggatgatttcctagcagaaggcttcaaattggtgctttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBA_1

Protein Analysis

207

Amino Acids

24.05

Weight (kDa)

7.56

Isoelectric Point (pI)

32.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004460)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G12560 AT4G12560 AT4G12560 AT4G22390 AT4G22390
fragaria_vesca	FvH4_3g00900 FvH4_3g00900
malus_domestica	MD05G1358500.v1.1 MD10G1332600.v1.1
prunus_persica	Prupe.4G009600_v2.0.a1 Prupe.4G009600_v2.0.a1 Prupe.4G009600_v2.0.a1 Prupe.4G009600_v2.0.a1 Prupe.4G009600_v2.0.a1 Prupe.4G009600_v2.0.a1 Prupe.4G009600_v2.0.a1 Prupe.4G009600_v2.0.a1 Prupe.4G009600_v2.0.a1
pyrus_communis	pycom05g32420 pycom10g28200
rosa_chinensis	RchiOBHm_Chr5g0001381
rosa_laevigata	RLG00000030926
rosa_multiflora	Rmu_sc0001706.1_g000001 Rmu_sc0003749.1_g000016 Rmu_sc0016478.1_g000001
rosa_roxburghii	Rroxscaffold_1G00074980
rosa_rugosa	Rorug04G0390300
rosa_samantha	Rh5AG010700 Rh5BG013400 Rh5CG011700 Rh5DG011100
rosa_wichuraiana	Rw5G001020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	175
AccI	GTMKAC	1 cut(s)	394
AccII	CGCG	3 cut(s)	52, 100, 477
AciI	CCGC	4 cut(s)	100, 123, 477, 512
AclWI	GGATC	2 cut(s)	85, 123
AfiI	CCNNNNNNNGG	1 cut(s)	526
AgsI	TTSAA	2 cut(s)	384, 610
AhdI	GACNNNNNGTC	1 cut(s)	102
Alw26I	GTCTC	1 cut(s)	299
AlwI	GGATC	2 cut(s)	85, 123
AoxI	GGCC	1 cut(s)	353
AspS9I	GGNCC	1 cut(s)	193
AsuHPI	GGTGA	1 cut(s)	106
AvaII	GGWCC	1 cut(s)	193
BanI	GGYRCC	1 cut(s)	175
BbsI	GAAGAC	1 cut(s)	555
BccI	CCATC	2 cut(s)	184, 448
BceAI	ACGGC	1 cut(s)	16
BcoDI	GTCTC	1 cut(s)	299
BfaI	CTAG	2 cut(s)	537, 596
BfmI	CTRYAG	1 cut(s)	501
BglII	AGATCT	1 cut(s)	424
Bme18I	GGWCC	1 cut(s)	193
BmeRI	GACNNNNNGTC	1 cut(s)	102
BmgT120I	GGNCC	1 cut(s)	193
BmiI	GGNNCC	1 cut(s)	177
BmsI	GCATC	1 cut(s)	171
BpiI	GAAGAC	1 cut(s)	555
BpuEI	CTTGAG	1 cut(s)	324
BsaWI	WCCGGW	2 cut(s)	195, 526
BsaXI	ACNNNNNCTCC	2 cut(s)	296, 326
Bsc4I	CCNNNNNNNGG	1 cut(s)	526
BseGI	GGATG	2 cut(s)	28, 592
BseLI	CCNNNNNNNGG	1 cut(s)	526
Bsh1236I	CGCG	3 cut(s)	52, 100, 477
BshFI	GGCC	1 cut(s)	355
BshNI	GGYRCC	1 cut(s)	175
BsiSI	CCGG	3 cut(s)	185, 196, 527
BslI	CCNNNNNNNGG	1 cut(s)	526
BsmAI	GTCTC	1 cut(s)	299
BsmI	GAATGC	1 cut(s)	10
BsnI	GGCC	1 cut(s)	355
Bsp143I	GATC	3 cut(s)	77, 115, 424
BspACI	CCGC	4 cut(s)	100, 123, 477, 512
BspANI	GGCC	1 cut(s)	355
BspFNI	CGCG	3 cut(s)	52, 100, 477
BspHI	TCATGA	1 cut(s)	106
BspLI	GGNNCC	1 cut(s)	177
BspPI	GGATC	2 cut(s)	85, 123
BspT107I	GGYRCC	1 cut(s)	175
BssMI	GATC	3 cut(s)	77, 115, 424
Bst4CI	ACNGT	2 cut(s)	291, 328
Bst6I	CTCTTC	1 cut(s)	575
BstDEI	CTNAG	1 cut(s)	357
BstF5I	GGATG	2 cut(s)	28, 592
BstFNI	CGCG	3 cut(s)	52, 100, 477
BstKTI	GATC	3 cut(s)	80, 118, 427
BstMAI	GTCTC	1 cut(s)	299
BstMBI	GATC	3 cut(s)	77, 115, 424
BstMWI	GCNNNNNNNGC	1 cut(s)	37
BstNSI	RCATGY	1 cut(s)	31
BstSFI	CTRYAG	1 cut(s)	501
BstUI	CGCG	3 cut(s)	52, 100, 477
BstV2I	GAAGAC	1 cut(s)	555
BstX2I	RGATCY	2 cut(s)	77, 424
BstYI	RGATCY	2 cut(s)	77, 424
BsuRI	GGCC	1 cut(s)	355
BtsCI	GGATG	2 cut(s)	28, 592
CciI	TCATGA	1 cut(s)	106
Cfr13I	GGNCC	1 cut(s)	193
CseI	GACGC	1 cut(s)	106
CviAII	CATG	3 cut(s)	28, 107, 419
CviJI	RGCY	6 cut(s)	248, 338, 355, 370, 500, 606
CviKI_1	RGCY	6 cut(s)	248, 338, 355, 370, 500, 606
DdeI	CTNAG	1 cut(s)	357
DpnI	GATC	3 cut(s)	79, 117, 426
DpnII	GATC	3 cut(s)	77, 115, 424
DriI	GACNNNNNGTC	1 cut(s)	102
Eam1104I	CTCTTC	1 cut(s)	575
Eam1105I	GACNNNNNGTC	1 cut(s)	102
EarI	CTCTTC	1 cut(s)	575
Eco147I	AGGCCT	1 cut(s)	355
Eco47I	GGWCC	1 cut(s)	193
FaeI	CATG	3 cut(s)	31, 110, 422
FaiI	YATR	9 cut(s)	29, 36, 108, 245, 255, 263, 294, 420, 503
FalI	AAGNNNNNCTT	2 cut(s)	219, 251
FatI	CATG	3 cut(s)	27, 106, 418
FauI	CCCGC	1 cut(s)	130
FblI	GTMKAC	1 cut(s)	394
FokI	GGATG	2 cut(s)	35, 599
FspBI	CTAG	2 cut(s)	537, 596
HaeIII	GGCC	1 cut(s)	355
HapII	CCGG	3 cut(s)	185, 196, 527
HgaI	GACGC	1 cut(s)	106
Hin1II	CATG	3 cut(s)	31, 110, 422
HincII	GTYRAC	2 cut(s)	395, 532
HindII	GTYRAC	2 cut(s)	395, 532
HinfI	GANTC	4 cut(s)	64, 103, 388, 472
HpaII	CCGG	3 cut(s)	185, 196, 527
HphI	GGTGA	1 cut(s)	106
Hpy166II	GTNNAC	4 cut(s)	324, 395, 532, 542
Hpy188I	TCNGA	2 cut(s)	207, 453
Hpy188III	TCNNGA	1 cut(s)	107
Hpy8I	GTNNAC	4 cut(s)	324, 395, 532, 542
Hpy99I	CGWCG	1 cut(s)	396
HpyAV	CCTTC	4 cut(s)	151, 221, 345, 596
HpyCH4III	ACNGT	2 cut(s)	291, 328
HpyCH4V	TGCA	2 cut(s)	85, 240
HpyF10VI	GCNNNNNNNGC	1 cut(s)	37
HpyF3I	CTNAG	1 cut(s)	357
Hsp92II	CATG	3 cut(s)	31, 110, 422
Kzo9I	GATC	3 cut(s)	77, 115, 424
LpnPI	CCDG	7 cut(s)	198, 209, 320, 359, 392, 498, 540
LweI	GCATC	1 cut(s)	171
MaeI	CTAG	2 cut(s)	537, 596
MaeIII	GTNAC	2 cut(s)	44, 94
MalI	GATC	3 cut(s)	79, 117, 426
MboI	GATC	3 cut(s)	77, 115, 424
MboII	GAAGA	4 cut(s)	269, 434, 560, 592
MflI	RGATCY	2 cut(s)	77, 424
MluCI	AATT	3 cut(s)	317, 465, 611
MlyI	GAGTC	1 cut(s)	112
MnlI	CCTC	5 cut(s)	166, 381, 490, 556, 576
MseI	TTAA	3 cut(s)	300, 366, 468
MspI	CCGG	3 cut(s)	185, 196, 527
Mva1269I	GAATGC	1 cut(s)	10
MvnI	CGCG	3 cut(s)	52, 100, 477
MwoI	GCNNNNNNNGC	1 cut(s)	37
NdeII	GATC	3 cut(s)	77, 115, 424
NlaIII	CATG	3 cut(s)	31, 110, 422
NlaIV	GGNNCC	1 cut(s)	177
NmuCI	GTSAC	1 cut(s)	94
NspI	RCATGY	1 cut(s)	31
PagI	TCATGA	1 cut(s)	106
PceI	AGGCCT	1 cut(s)	355
PctI	GAATGC	1 cut(s)	10
PfeI	GAWTC	3 cut(s)	64, 388, 472
PleI	GAGTC	1 cut(s)	111
PpsI	GAGTC	1 cut(s)	111
PspN4I	GGNNCC	1 cut(s)	177
PspPI	GGNCC	1 cut(s)	193
PsuI	RGATCY	2 cut(s)	77, 424
SalI	GTCGAC	1 cut(s)	393
SaqAI	TTAA	3 cut(s)	300, 366, 468
Sau3AI	GATC	3 cut(s)	77, 115, 424
Sau96I	GGNCC	1 cut(s)	193
SchI	GAGTC	1 cut(s)	112
SetI	ASST	2 cut(s)	21, 177
SfaNI	GCATC	1 cut(s)	171
SfcI	CTRYAG	1 cut(s)	501
SinI	GGWCC	1 cut(s)	193
SmlI	CTYRAG	1 cut(s)	339
SmoI	CTYRAG	1 cut(s)	339
Sse9I	AATT	3 cut(s)	317, 465, 611
SseBI	AGGCCT	1 cut(s)	355
SsiI	CCGC	4 cut(s)	100, 123, 477, 512
SspMI	CTAG	2 cut(s)	537, 596
StuI	AGGCCT	1 cut(s)	355
TaaI	ACNGT	2 cut(s)	291, 328
TaqI	TCGA	1 cut(s)	394
TasI	AATT	3 cut(s)	317, 465, 611
TfiI	GAWTC	3 cut(s)	64, 388, 472
Tru1I	TTAA	3 cut(s)	300, 366, 468
Tru9I	TTAA	3 cut(s)	300, 366, 468
TseFI	GTSAC	1 cut(s)	94
Tsp45I	GTSAC	1 cut(s)	94
TspDTI	ATGAA	4 cut(s)	17, 123, 270, 435
VpaK11BI	GGWCC	1 cut(s)	193
XceI	RCATGY	1 cut(s)	31
XmiI	GTMKAC	1 cut(s)	394
XspI	CTAG	2 cut(s)	537, 596

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.