Rw5G001020

f-box protein

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
Physical Location & Seq
Forward (+)
888789 .. 890432
1644 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G001020.1

Sequence Viewer

Length: 1296 bp
ATGGAACTGGACGAAGAAGTTTTTTGGAGTGGAAATATTAATAGAAAGGATAATTCCGTAAAAACACCCTTCCATCCACCCCCAGTACCCTCATCCTTACGCGTCTCACTTTTCCCCACTCACACTTTCCCAAAACTCCAACCACCCAGAAATGAAATCTGCAGAAGAAAACCCTCCACAGACGCCCAGCACCGCCAAATCCAAGCCTTCCTGGCCGAGCTCCCGCCGGAGGTAATCATCAACATCCTCTCCCGCCTCCACGTCGGCCGCCTCCTCTGTTTCAGGTCCGTCGCCAGACCATGGCGGTCCCTAATCGACAGCTCCTACTTCAAAAACCTCCACCTCCTTCATTCCACCCAGACCAAATCCAATCTCGCTCTTATCCTCCGTAAGGACTCCGACCTCTACTGCGTCGATTTCGATTCGCTAAACGATGCCGTCGAGCTCAATCACCCGCTCATGTGTTACAGCAACCGAATTAGGGTTCTGGGGTCCTGCAACGGGCTGCTGTGCATCTGCAACGTGGCGGAGGACATCGCGTTGTGGAGTCCCTGGATTAAAAAGTACCGGATTCTGCCGTCTTTGCCGTCGGATCGAAAGAGGGACAAAGGTATGTGCTTGTGTGGTGCTAGGGTTTACGGGCTGGGATACGACTCCGTTCATGACGACTATAAATTGAGTGAGGTGAAAGTTTATAGTCTGAGAATGAATGCGTGGAGAAAGGTGGATGACATGCCGTATGTGCTTGGATCTGTGCATTGGGTGGTGACGCGGAGTCATGAAGTGGATCAACCCGCAACCGAGTTGGTTATTGGATTTGATGTAGAGAAGGAGAGATTTGGGGAGGTGCCGATGCCGGAGATGGACCGGAAGTGTCAGATTGATGTGGGGTATTTGGAAGGGTGTCTTTGCATTATAGCCAAGTATGAAGATATGGGTGTTGATGTTTGGACTATCAAACAGTATGGGGTTAAGGAGACTTGGTGTAAATTGTTTACTGTGAAACAGGCTCAAGGGGTTAGAAGGCCTAAGAGTATTAAGCCTCTGGTTTATTCAAAGAATCGTCGACAAGTTTTGCTGGAACAAAACCATGAAGATCTTGTTTGGTTTGACTTGGAAAGTCAGATGGTCAATAAAATTAAGATTCGCGGTTTGCCAGATTTATTTGAGGCTATAGTCTGTGCGGAAACCCTTGTTCCGGTTGACCCTAGTAAACGAGAAGACAAGGAAAAAGAGGGAAAAAAGAATAAGAAGAGGGATGATTTCCTAGCAGAAGGCTTCAAATTGGTGCTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

431

Amino Acids

49.8

Weight (kDa)

8.62

Isoelectric Point (pI)

42.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 72 - 109 8.1e-06 F-box-like
F-box PF00646 73 - 111 3.9e-07 F-box domain
FBA_1 PF07734 128 - 382 1.2e-15 F-box associated beta propeller domain
FBA_3 PF08268 154 - 387 2.8e-09 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 847
AccB7I CCANNNNNTGG 1 cut(s) 300
AccBSI CCGCTC 1 cut(s) 457
AccI GTMKAC 1 cut(s) 1066
AccII CGCG 4 cut(s) 102, 539, 772, 1149
AclWI GGATC 3 cut(s) 600, 757, 795
AcoI YGGCCR 2 cut(s) 213, 265
AcyI GRCGYC 1 cut(s) 183
AfaI GTAC 2 cut(s) 87, 566
AfiI CCNNNNNNNGG 6 cut(s) 229, 300, 391, 481, 501, 1198
AflIII ACRYGT 1 cut(s) 100
AgsI TTSAA 3 cut(s) 331, 1056, 1282
AhdI GACNNNNNGTC 1 cut(s) 774
AjiI CACGTC 1 cut(s) 262
AjnI CCWGG 2 cut(s) 210, 551
AluBI AGCT 3 cut(s) 220, 321, 445
AluI AGCT 3 cut(s) 220, 321, 445
Alw21I GWGCWC 2 cut(s) 222, 447
Alw26I GTCTC 2 cut(s) 109, 971
AlwI GGATC 3 cut(s) 600, 757, 795
AoxI GGCC 3 cut(s) 213, 265, 1025
ApeKI GCWGC 1 cut(s) 505
AseI ATTAAT 1 cut(s) 39
AspS9I GGNCC 4 cut(s) 285, 306, 492, 865
AsuHPI GGTGA 3 cut(s) 443, 697, 778
AvaII GGWCC 4 cut(s) 285, 306, 492, 865
BanI GGYRCC 1 cut(s) 847
BanII GRGCYC 2 cut(s) 222, 447
BbsI GAAGAC 1 cut(s) 1227
Bbv12I GWGCWC 2 cut(s) 222, 447
BbvI GCAGC 1 cut(s) 492
BccI CCATC 3 cut(s) 81, 856, 1120
BceAI ACGGC 4 cut(s) 422, 562, 571, 721
BciT130I CCWGG 2 cut(s) 212, 553
BciVI GTATCC 1 cut(s) 641
BcoDI GTCTC 2 cut(s) 109, 971
BfaI CTAG 3 cut(s) 630, 1209, 1268
BfmI CTRYAG 2 cut(s) 160, 1173
BfuI GTATCC 1 cut(s) 641
BglI GCCNNNNNGGC 1 cut(s) 212
BglII AGATCT 1 cut(s) 1096
BisI GCNGC 2 cut(s) 268, 506
BlsI GCNGC 2 cut(s) 269, 507
Bme1390I CCNGG 2 cut(s) 212, 553
Bme18I GGWCC 4 cut(s) 285, 306, 492, 865
BmeRI GACNNNNNGTC 1 cut(s) 774
BmgBI CACGTC 1 cut(s) 262
BmgT120I GGNCC 4 cut(s) 285, 306, 492, 865
BmiI GGNNCC 3 cut(s) 308, 493, 849
BmrFI CCNGG 2 cut(s) 212, 553
BmrI ACTGGG 1 cut(s) 77
BmsI GCATC 3 cut(s) 424, 522, 843
BmuI ACTGGG 1 cut(s) 77
BpiI GAAGAC 1 cut(s) 1227
BpuEI CTTGAG 1 cut(s) 996
BsaHI GRCGYC 1 cut(s) 183
BsaJI CCNNGG 2 cut(s) 299, 551
BsaWI WCCGGW 3 cut(s) 567, 867, 1198
BsaXI ACNNNNNCTCC 4 cut(s) 233, 263, 968, 998
Bsc4I CCNNNNNNNGG 6 cut(s) 229, 300, 391, 481, 501, 1198
Bse1I ACTGG 2 cut(s) 12, 83
BseBI CCWGG 2 cut(s) 212, 553
BseDI CCNNGG 2 cut(s) 299, 551
BseGI GGATG 5 cut(s) 73, 92, 243, 733, 1264
BseLI CCNNNNNNNGG 6 cut(s) 229, 300, 391, 481, 501, 1198
BseMII CTCAG 1 cut(s) 692
BseNI ACTGG 2 cut(s) 12, 83
BseRI GAGGAG 1 cut(s) 263
BseX3I CGGCCG 1 cut(s) 265
BseXI GCAGC 1 cut(s) 492
BseYI CCCAGC 2 cut(s) 186, 643
Bsh1236I CGCG 4 cut(s) 102, 539, 772, 1149
Bsh1285I CGRYCG 1 cut(s) 268
BshFI GGCC 3 cut(s) 215, 267, 1027
BshNI GGYRCC 1 cut(s) 847
BsiEI CGRYCG 1 cut(s) 268
BsiHKAI GWGCWC 2 cut(s) 222, 447
BsiSI CCGG 5 cut(s) 227, 568, 857, 868, 1199
BslFI GGGAC 3 cut(s) 292, 534, 617
BslI CCNNNNNNNGG 6 cut(s) 229, 300, 391, 481, 501, 1198
BsmAI GTCTC 2 cut(s) 109, 971
BsmBI CGTCTC 1 cut(s) 109
BsmFI GGGAC 3 cut(s) 292, 534, 617
BsmI GAATGC 1 cut(s) 715
BsnI GGCC 3 cut(s) 215, 267, 1027
Bsp1286I GDGCHC 2 cut(s) 222, 447
Bsp143I GATC 4 cut(s) 592, 749, 787, 1096
Bsp19I CCATGG 1 cut(s) 299
BspANI GGCC 3 cut(s) 215, 267, 1027
BspCNI CTCAG 1 cut(s) 693
BspFNI CGCG 4 cut(s) 102, 539, 772, 1149
BspHI TCATGA 2 cut(s) 661, 778
BspLI GGNNCC 3 cut(s) 308, 493, 849
BspMAI CTGCAG 1 cut(s) 164
BspPI GGATC 3 cut(s) 600, 757, 795
BspT107I GGYRCC 1 cut(s) 847
BsrBI CCGCTC 1 cut(s) 457
BsrI ACTGG 2 cut(s) 12, 83
BssECI CCNNGG 2 cut(s) 299, 551
BssMI GATC 4 cut(s) 592, 749, 787, 1096
BssNI GRCGYC 1 cut(s) 183
BssT1I CCWWGG 1 cut(s) 299
Bst2UI CCWGG 2 cut(s) 212, 553
Bst4CI ACNGT 2 cut(s) 963, 1000
Bst6I CTCTTC 1 cut(s) 1247
BstACI GRCGYC 1 cut(s) 183
BstDEI CTNAG 2 cut(s) 701, 1029
BstDSI CCRYGG 1 cut(s) 299
BstENI CCTNNNNNAGG 1 cut(s) 389
BstF5I GGATG 5 cut(s) 73, 92, 243, 733, 1264
BstFNI CGCG 4 cut(s) 102, 539, 772, 1149
BstKTI GATC 4 cut(s) 595, 752, 790, 1099
BstMAI GTCTC 2 cut(s) 109, 971
BstMBI GATC 4 cut(s) 592, 749, 787, 1096
BstMCI CGRYCG 1 cut(s) 268
BstMWI GCNNNNNNNGC 3 cut(s) 212, 583, 742
BstNI CCWGG 2 cut(s) 212, 553
BstNSI RCATGY 1 cut(s) 736
BstSCI CCNGG 2 cut(s) 210, 551
BstSFI CTRYAG 2 cut(s) 160, 1173
BstUI CGCG 4 cut(s) 102, 539, 772, 1149
BstV1I GCAGC 1 cut(s) 492
BstV2I GAAGAC 1 cut(s) 1227
BstX2I RGATCY 2 cut(s) 749, 1096
BstYI RGATCY 2 cut(s) 749, 1096
BstZI CGGCCG 1 cut(s) 265
BsuI GTATCC 1 cut(s) 641
BsuRI GGCC 3 cut(s) 215, 267, 1027
BtgI CCRYGG 1 cut(s) 299
BtgZI GCGATG 1 cut(s) 520
BtrI CACGTC 1 cut(s) 262
BtsCI GGATG 5 cut(s) 73, 92, 243, 733, 1264
CciI TCATGA 2 cut(s) 661, 778
Cfr13I GGNCC 4 cut(s) 285, 306, 492, 865
CseI GACGC 4 cut(s) 91, 191, 400, 778
Csp6I GTAC 2 cut(s) 86, 565
CviAII CATG 6 cut(s) 300, 460, 662, 733, 779, 1091
CviQI GTAC 2 cut(s) 86, 565
DdeI CTNAG 2 cut(s) 701, 1029
DpnI GATC 4 cut(s) 594, 751, 789, 1098
DpnII GATC 4 cut(s) 592, 749, 787, 1096
DriI GACNNNNNGTC 1 cut(s) 774
EaeI YGGCCR 2 cut(s) 213, 265
EagI CGGCCG 1 cut(s) 265
Eam1104I CTCTTC 1 cut(s) 1247
Eam1105I GACNNNNNGTC 1 cut(s) 774
EarI CTCTTC 1 cut(s) 1247
EciI GGCGGA 1 cut(s) 542
Ecl136II GAGCTC 2 cut(s) 220, 445
EclXI CGGCCG 1 cut(s) 265
Eco130I CCWWGG 1 cut(s) 299
Eco147I AGGCCT 1 cut(s) 1027
Eco24I GRGCYC 2 cut(s) 222, 447
Eco47I GGWCC 4 cut(s) 285, 306, 492, 865
Eco52I CGGCCG 1 cut(s) 265
Eco53kI GAGCTC 2 cut(s) 220, 445
EcoICRI GAGCTC 2 cut(s) 220, 445
EcoNI CCTNNNNNAGG 1 cut(s) 389
EcoO109I RGGNCCY 1 cut(s) 492
EcoRII CCWGG 2 cut(s) 210, 551
EcoT14I CCWWGG 1 cut(s) 299
EcoT38I GRGCYC 2 cut(s) 222, 447
ErhI CCWWGG 1 cut(s) 299
Esp3I CGTCTC 1 cut(s) 109
FaeI CATG 6 cut(s) 303, 463, 665, 736, 782, 1094
FalI AAGNNNNNCTT 2 cut(s) 891, 923
FaqI GGGAC 3 cut(s) 292, 534, 617
FatI CATG 6 cut(s) 299, 459, 661, 732, 778, 1090
FauI CCCGC 4 cut(s) 231, 260, 462, 802
FblI GTMKAC 1 cut(s) 1066
Fnu4HI GCNGC 2 cut(s) 268, 506
FokI GGATG 5 cut(s) 60, 79, 230, 740, 1271
FriOI GRGCYC 2 cut(s) 222, 447
Fsp4HI GCNGC 2 cut(s) 268, 506
FspBI CTAG 3 cut(s) 630, 1209, 1268
GluI GCNGC 2 cut(s) 268, 506
GsaI CCCAGC 2 cut(s) 190, 647
HaeIII GGCC 3 cut(s) 215, 267, 1027
HapII CCGG 5 cut(s) 227, 568, 857, 868, 1199
HgaI GACGC 4 cut(s) 91, 191, 400, 778
Hin1I GRCGYC 1 cut(s) 183
Hin1II CATG 6 cut(s) 303, 463, 665, 736, 782, 1094
HincII GTYRAC 2 cut(s) 1067, 1204
HindII GTYRAC 2 cut(s) 1067, 1204
HinfI GANTC 8 cut(s) 395, 422, 547, 571, 653, 775, 1060, 1144
HpaII CCGG 5 cut(s) 227, 568, 857, 868, 1199
HphI GGTGA 3 cut(s) 443, 697, 778
Hpy166II GTNNAC 5 cut(s) 637, 996, 1067, 1204, 1214
Hpy188I TCNGA 5 cut(s) 400, 592, 702, 879, 1125
Hpy188III TCNNGA 2 cut(s) 662, 779
Hpy8I GTNNAC 5 cut(s) 637, 996, 1067, 1204, 1214
Hpy99I CGWCG 6 cut(s) 266, 293, 416, 443, 592, 1068
HpyAV CCTTC 7 cut(s) 79, 217, 356, 823, 893, 1017, 1268
HpyCH4III ACNGT 2 cut(s) 963, 1000
HpyCH4IV ACGT 2 cut(s) 261, 522
HpyCH4V TGCA 6 cut(s) 162, 498, 513, 519, 757, 912
HpyF10VI GCNNNNNNNGC 3 cut(s) 212, 583, 742
HpyF3I CTNAG 2 cut(s) 701, 1029
HpySE526I ACGT 2 cut(s) 261, 522
Hsp92I GRCGYC 1 cut(s) 183
Hsp92II CATG 6 cut(s) 303, 463, 665, 736, 782, 1094
Kzo9I GATC 4 cut(s) 592, 749, 787, 1096
LmnI GCTCC 2 cut(s) 225, 326
Lsp1109I GCAGC 1 cut(s) 492
LweI GCATC 3 cut(s) 424, 522, 843
MaeI CTAG 3 cut(s) 630, 1209, 1268
MaeII ACGT 2 cut(s) 261, 522
MaeIII GTNAC 2 cut(s) 464, 766
MalI GATC 4 cut(s) 594, 751, 789, 1098
MbiI CCGCTC 1 cut(s) 457
MboI GATC 4 cut(s) 592, 749, 787, 1096
MboII GAAGA 6 cut(s) 26, 177, 941, 1106, 1232, 1264
MflI RGATCY 2 cut(s) 749, 1096
MhlI GDGCHC 2 cut(s) 222, 447
MluCI AATT 6 cut(s) 52, 477, 674, 989, 1137, 1283
MluI ACGCGT 1 cut(s) 100
MlyI GAGTC 4 cut(s) 389, 556, 647, 784
MmeI TCCRAC 3 cut(s) 163, 423, 570
MseI TTAA 5 cut(s) 39, 558, 972, 1038, 1140
MspI CCGG 5 cut(s) 227, 568, 857, 868, 1199
MspR9I CCNGG 2 cut(s) 212, 553
Mva1269I GAATGC 1 cut(s) 715
MvaI CCWGG 2 cut(s) 212, 553
MvnI CGCG 4 cut(s) 102, 539, 772, 1149
MwoI GCNNNNNNNGC 3 cut(s) 212, 583, 742
NcoI CCATGG 1 cut(s) 299
NdeII GATC 4 cut(s) 592, 749, 787, 1096
NlaIII CATG 6 cut(s) 303, 463, 665, 736, 782, 1094
NlaIV GGNNCC 3 cut(s) 308, 493, 849
NmeAIII GCCGAG 1 cut(s) 241
NmuCI GTSAC 1 cut(s) 766
NspI RCATGY 1 cut(s) 736
PagI TCATGA 2 cut(s) 661, 778
PceI AGGCCT 1 cut(s) 1027
PcsI WCGNNNNNNNCGW 1 cut(s) 438
PctI GAATGC 1 cut(s) 715
PfeI GAWTC 4 cut(s) 422, 571, 1060, 1144
PflMI CCANNNNNTGG 1 cut(s) 300
PkrI GCNGC 2 cut(s) 269, 507
PleI GAGTC 4 cut(s) 389, 555, 647, 783
PpsI GAGTC 4 cut(s) 389, 555, 647, 783
PpuMI RGGWCCY 1 cut(s) 492
PshBI ATTAAT 1 cut(s) 39
Psp124BI GAGCTC 2 cut(s) 222, 447
Psp5II RGGWCCY 1 cut(s) 492
Psp6I CCWGG 2 cut(s) 210, 551
PspFI CCCAGC 2 cut(s) 186, 643
PspGI CCWGG 2 cut(s) 210, 551
PspN4I GGNNCC 3 cut(s) 308, 493, 849
PspPI GGNCC 4 cut(s) 285, 306, 492, 865
PspPPI RGGWCCY 1 cut(s) 492
PstI CTGCAG 1 cut(s) 164
PsuI RGATCY 2 cut(s) 749, 1096
RsaI GTAC 2 cut(s) 87, 566
RsaNI GTAC 2 cut(s) 86, 565
SacI GAGCTC 2 cut(s) 222, 447
SalI GTCGAC 1 cut(s) 1065
SaqAI TTAA 5 cut(s) 39, 558, 972, 1038, 1140
SatI GCNGC 2 cut(s) 268, 506
Sau3AI GATC 4 cut(s) 592, 749, 787, 1096
Sau96I GGNCC 4 cut(s) 285, 306, 492, 865
SchI GAGTC 4 cut(s) 389, 556, 647, 784
ScrFI CCNGG 2 cut(s) 212, 553
SduI GDGCHC 2 cut(s) 222, 447
SfaNI GCATC 3 cut(s) 424, 522, 843
SfcI CTRYAG 2 cut(s) 160, 1173
SinI GGWCC 4 cut(s) 285, 306, 492, 865
SmlI CTYRAG 1 cut(s) 1011
SmoI CTYRAG 1 cut(s) 1011
Sse9I AATT 6 cut(s) 52, 477, 674, 989, 1137, 1283
SseBI AGGCCT 1 cut(s) 1027
SspI AATATT 1 cut(s) 37
SspMI CTAG 3 cut(s) 630, 1209, 1268
SstI GAGCTC 2 cut(s) 222, 447
StuI AGGCCT 1 cut(s) 1027
StyD4I CCNGG 2 cut(s) 210, 551
StyI CCWWGG 1 cut(s) 299
TaaI ACNGT 2 cut(s) 963, 1000
TaiI ACGT 2 cut(s) 264, 525
TaqI TCGA 6 cut(s) 315, 414, 420, 441, 595, 1066
TasI AATT 6 cut(s) 52, 477, 674, 989, 1137, 1283
TauI GCSGC 1 cut(s) 270
TfiI GAWTC 4 cut(s) 422, 571, 1060, 1144
Tru1I TTAA 5 cut(s) 39, 558, 972, 1038, 1140
Tru9I TTAA 5 cut(s) 39, 558, 972, 1038, 1140
TseFI GTSAC 1 cut(s) 766
TseI GCWGC 1 cut(s) 505
Tsp45I GTSAC 1 cut(s) 766
TspDTI ATGAA 7 cut(s) 168, 338, 650, 722, 795, 942, 1107
TspGWI ACGGA 4 cut(s) 46, 277, 377, 646
Van91I CCANNNNNTGG 1 cut(s) 300
VpaK11BI GGWCC 4 cut(s) 285, 306, 492, 865
VspI ATTAAT 1 cut(s) 39
XagI CCTNNNNNAGG 1 cut(s) 389
XceI RCATGY 1 cut(s) 736
XmiI GTMKAC 1 cut(s) 1066
XspI CTAG 3 cut(s) 630, 1209, 1268
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.