FvH4_3g00900

f-box protein

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
Physical Location & Seq
Forward (+)
458781 .. 462471
3691 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g00900.t2

Sequence Viewer

Length: 1221 bp
ATGAAATCTGCAGACGAAGAAGACGCAGAGCACCGCCAAATACAAGCATTCCTCGCCGAGCTCCCGCCGGAGGTCATCATCAACATCCTCTCCCGCCTCCGCGTCGGCCGCCTCCTCTATTTCAGGTCCGTCGCCAAGCCATGGCGCTCCCTAATCGACAGCTCCTACTTCCGAAACCTCCACCTCCTCCATTCCACCCACACCAAATCCAATCTCAACCTCATCCTCCGCAAAGAGTCCGACCTCTACTGCGTCGATTTCGATTCGCTAAACGACGCCGTCGAGCTCACGCACCCGCTCATGTGTTACAGCAACCGGATCAGGGTCCTGGGGTCCTGCAACGGGCTGCTGTGCATCTGCAACGTGGCGGAGGACATCGCGCTGTGGAGCCCCTGGATTAGGAAGTACCGGATTCTGCCTTCTCTGCCGTCGGATCGGAAGAGGGACAAAGGGATGTGCCTGTGTGGCGCTAGGGTTTACGGATTGGGATACGACGCCGTTCATGACGACTATAAACTGGTCAGGATTTCGCAGTTTATCGGATGGGACTCTGCCTCGTTTGAGGGTGAGGTGAAGGTTTATAGCCTGAGATTGAACGAGTGGAGAAGGATGGATAACATGCCGTATGTGTTGTGTTACACCCGGAAAATGGGGATTCTCGCGAGTGGATGCGTGCATTGGGTGGTGACACGGGCTCCGGAGCCGGAAATGGATCGACCCGCAACCGAGATGGTTGCTGGATTTGATTTGGTGAAGGAGAAATTTGGGGAGGTGCCGATGCCGGAGATGGACAGGAAGTGTCAGATTGATGTGGGGTATTTGGAAGGATGGCTTTGCATTGTAGCGAAATATGAAGGTGTGGGTGTTGATGTTTGGAGTATGAAACAATATGGGGTTAAGGAGTCTTGGTGTAAGTTGTTTACTGTGAAGCAGGTTCAAGGGGTTAGAAGGCCCAAGAGTATTAGGCCTCTGGTTTATTCAAAGAATGGCCGCCAAGTTTTGCTGGAACAGAATCATGAAGATCTTGTTTGGTTTGACTTGGAGAGTCAGATGGTGAAGAGTGTCAAGATTCGTGGTTTGCCAGATTTATTTGAGGCCACAGTTTGTGCGGAAACCCTTGTTTCAGTAGATCCTAGTAAACGAGAGGATAAGGAAAAAGAAGGAAAGAAGAATAAGAAAAGGGATGATTTCCTGGCTGAAGGCTTCAAATTGGTGCTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

407

Amino Acids

46.86

Weight (kDa)

8.31

Isoelectric Point (pI)

37.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 20 - 58 1.3e-06 F-box domain
FBA_1 PF07734 76 - 350 5.6e-22 F-box associated beta propeller domain
FBA_3 PF08268 101 - 365 3.5e-16 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 922
AccB1I GGYRCC 1 cut(s) 772
AccB7I CCANNNNNTGG 1 cut(s) 141
AccBSI CCGCTC 1 cut(s) 298
AccII CGCG 3 cut(s) 102, 380, 662
AccIII TCCGGA 1 cut(s) 697
AclWI GGATC 4 cut(s) 326, 441, 720, 1124
AcoI YGGCCR 2 cut(s) 106, 988
AcsI RAATTY 1 cut(s) 761
AcuI CTGAAG 1 cut(s) 1218
AcyI GRCGYC 2 cut(s) 276, 495
AfaI GTAC 1 cut(s) 407
AfiI CCNNNNNNNGG 6 cut(s) 70, 141, 322, 342, 399, 649
AgsI TTSAA 4 cut(s) 595, 938, 981, 1207
AjnI CCWGG 3 cut(s) 327, 392, 1191
AluBI AGCT 3 cut(s) 61, 162, 286
AluI AGCT 3 cut(s) 61, 162, 286
Alw21I GWGCWC 3 cut(s) 33, 63, 288
AlwI GGATC 4 cut(s) 326, 441, 720, 1124
Aor13HI TCCGGA 1 cut(s) 697
AoxI GGCC 5 cut(s) 106, 950, 965, 988, 1095
ApeKI GCWGC 1 cut(s) 346
ApoI RAATTY 1 cut(s) 761
AspLEI GCGC 3 cut(s) 147, 382, 470
AspS9I GGNCC 4 cut(s) 126, 325, 333, 951
AsuC2I CCSGG 1 cut(s) 643
AsuHPI GGTGA 5 cut(s) 578, 583, 697, 763, 1066
AvaII GGWCC 3 cut(s) 126, 325, 333
BanI GGYRCC 1 cut(s) 772
BanII GRGCYC 4 cut(s) 63, 288, 392, 697
BbsI GAAGAC 1 cut(s) 27
Bbv12I GWGCWC 3 cut(s) 33, 63, 288
BbvI GCAGC 1 cut(s) 333
BccI CCATC 6 cut(s) 537, 604, 724, 781, 822, 1045
BceAI ACGGC 4 cut(s) 263, 412, 482, 607
BcgI CGANNNNNNTGC 2 cut(s) 716, 750
BciT130I CCWGG 3 cut(s) 329, 394, 1193
BciVI GTATCC 1 cut(s) 482
BcnI CCSGG 1 cut(s) 643
BfaI CTAG 2 cut(s) 471, 1134
BfmI CTRYAG 2 cut(s) 9, 1217
BfoI RGCGCY 2 cut(s) 148, 471
BfuAI ACCTGC 1 cut(s) 922
BfuI GTATCC 1 cut(s) 482
BglI GCCNNNNNGGC 1 cut(s) 465
BglII AGATCT 1 cut(s) 1021
BisI GCNGC 3 cut(s) 109, 347, 991
BlsI GCNGC 3 cut(s) 110, 348, 992
Bme1390I CCNGG 4 cut(s) 329, 394, 643, 1193
Bme18I GGWCC 3 cut(s) 126, 325, 333
BmgT120I GGNCC 4 cut(s) 126, 325, 333, 951
BmiI GGNNCC 6 cut(s) 326, 334, 389, 696, 702, 774
BmrFI CCNGG 4 cut(s) 329, 394, 643, 1193
BmsI GCATC 3 cut(s) 363, 659, 768
BpiI GAAGAC 1 cut(s) 27
BpuMI CCSGG 1 cut(s) 643
BsaHI GRCGYC 2 cut(s) 276, 495
BsaJI CCNNGG 3 cut(s) 140, 328, 392
BsaWI WCCGGW 3 cut(s) 315, 408, 697
BsaXI ACNNNNNCTCC 6 cut(s) 74, 104, 679, 709, 893, 923
Bsc4I CCNNNNNNNGG 6 cut(s) 70, 141, 322, 342, 399, 649
Bse1I ACTGG 1 cut(s) 522
BseAI TCCGGA 1 cut(s) 697
BseBI CCWGG 3 cut(s) 329, 394, 1193
BseDI CCNNGG 3 cut(s) 140, 328, 392
BseGI GGATG 8 cut(s) 84, 222, 459, 548, 615, 674, 833, 1189
BseLI CCNNNNNNNGG 6 cut(s) 70, 141, 322, 342, 399, 649
BseMII CTCAG 1 cut(s) 578
BseNI ACTGG 1 cut(s) 522
BseRI GAGGAG 2 cut(s) 104, 176
BseX3I CGGCCG 1 cut(s) 106
BseXI GCAGC 1 cut(s) 333
Bsh1236I CGCG 3 cut(s) 102, 380, 662
Bsh1285I CGRYCG 1 cut(s) 109
BshFI GGCC 5 cut(s) 108, 952, 967, 990, 1097
BshNI GGYRCC 1 cut(s) 772
BsiEI CGRYCG 1 cut(s) 109
BsiHKAI GWGCWC 3 cut(s) 33, 63, 288
BsiSI CCGG 7 cut(s) 68, 316, 409, 643, 698, 704, 782
BslFI GGGAC 2 cut(s) 458, 560
BslI CCNNNNNNNGG 6 cut(s) 70, 141, 322, 342, 399, 649
BsmFI GGGAC 2 cut(s) 458, 560
BsmI GAATGC 1 cut(s) 47
BsnI GGCC 5 cut(s) 108, 952, 967, 990, 1097
Bsp1286I GDGCHC 5 cut(s) 33, 63, 288, 392, 697
Bsp13I TCCGGA 1 cut(s) 697
Bsp143I GATC 5 cut(s) 318, 433, 712, 1021, 1129
Bsp19I CCATGG 1 cut(s) 140
Bsp68I TCGCGA 1 cut(s) 662
BspANI GGCC 5 cut(s) 108, 952, 967, 990, 1097
BspCNI CTCAG 1 cut(s) 579
BspEI TCCGGA 1 cut(s) 697
BspFNI CGCG 3 cut(s) 102, 380, 662
BspHI TCATGA 2 cut(s) 502, 1015
BspLI GGNNCC 6 cut(s) 326, 334, 389, 696, 702, 774
BspMAI CTGCAG 1 cut(s) 13
BspMI ACCTGC 1 cut(s) 922
BspPI GGATC 4 cut(s) 326, 441, 720, 1124
BspT107I GGYRCC 1 cut(s) 772
BsrBI CCGCTC 1 cut(s) 298
BsrI ACTGG 1 cut(s) 522
BssECI CCNNGG 3 cut(s) 140, 328, 392
BssMI GATC 5 cut(s) 318, 433, 712, 1021, 1129
BssNI GRCGYC 2 cut(s) 276, 495
BssT1I CCWWGG 1 cut(s) 140
Bst2UI CCWGG 3 cut(s) 329, 394, 1193
Bst4CI ACNGT 2 cut(s) 925, 1102
Bst6I CTCTTC 2 cut(s) 434, 1052
BstACI GRCGYC 2 cut(s) 276, 495
BstC8I GCNNGC 1 cut(s) 674
BstDEI CTNAG 1 cut(s) 587
BstDSI CCRYGG 1 cut(s) 140
BstENI CCTNNNNNAGG 1 cut(s) 397
BstF5I GGATG 8 cut(s) 84, 222, 459, 548, 615, 674, 833, 1189
BstFNI CGCG 3 cut(s) 102, 380, 662
BstH2I RGCGCY 2 cut(s) 148, 471
BstHHI GCGC 3 cut(s) 147, 382, 470
BstKTI GATC 5 cut(s) 321, 436, 715, 1024, 1132
BstMBI GATC 5 cut(s) 318, 433, 712, 1021, 1129
BstMCI CGRYCG 1 cut(s) 109
BstMWI GCNNNNNNNGC 4 cut(s) 53, 108, 424, 465
BstNI CCWGG 3 cut(s) 329, 394, 1193
BstNSI RCATGY 1 cut(s) 622
BstSCI CCNGG 4 cut(s) 327, 392, 641, 1191
BstSFI CTRYAG 2 cut(s) 9, 1217
BstUI CGCG 3 cut(s) 102, 380, 662
BstV1I GCAGC 1 cut(s) 333
BstV2I GAAGAC 1 cut(s) 27
BstX2I RGATCY 2 cut(s) 1021, 1129
BstYI RGATCY 2 cut(s) 1021, 1129
BstZI CGGCCG 1 cut(s) 106
BsuI GTATCC 1 cut(s) 482
BsuRI GGCC 5 cut(s) 108, 952, 967, 990, 1097
BtgI CCRYGG 1 cut(s) 140
BtgZI GCGATG 1 cut(s) 361
BtsCI GGATG 8 cut(s) 84, 222, 459, 548, 615, 674, 833, 1189
BtuMI TCGCGA 1 cut(s) 662
BveI ACCTGC 1 cut(s) 922
Cac8I GCNNGC 1 cut(s) 674
CciI TCATGA 2 cut(s) 502, 1015
CfoI GCGC 3 cut(s) 147, 382, 470
Cfr13I GGNCC 4 cut(s) 126, 325, 333, 951
CseI GACGC 5 cut(s) 32, 91, 241, 284, 503
Csp6I GTAC 1 cut(s) 406
CspCI CAANNNNNGTGG 2 cut(s) 1054, 1089
CviAII CATG 5 cut(s) 141, 301, 503, 619, 1016
CviQI GTAC 1 cut(s) 406
DdeI CTNAG 1 cut(s) 587
DpnI GATC 5 cut(s) 320, 435, 714, 1023, 1131
DpnII GATC 5 cut(s) 318, 433, 712, 1021, 1129
EaeI YGGCCR 2 cut(s) 106, 988
EagI CGGCCG 1 cut(s) 106
Eam1104I CTCTTC 2 cut(s) 434, 1052
EarI CTCTTC 2 cut(s) 434, 1052
EciI GGCGGA 1 cut(s) 383
Ecl136II GAGCTC 2 cut(s) 61, 286
EclXI CGGCCG 1 cut(s) 106
Eco130I CCWWGG 1 cut(s) 140
Eco147I AGGCCT 1 cut(s) 967
Eco24I GRGCYC 4 cut(s) 63, 288, 392, 697
Eco47I GGWCC 3 cut(s) 126, 325, 333
Eco52I CGGCCG 1 cut(s) 106
Eco53kI GAGCTC 2 cut(s) 61, 286
Eco57I CTGAAG 1 cut(s) 1218
EcoICRI GAGCTC 2 cut(s) 61, 286
EcoNI CCTNNNNNAGG 1 cut(s) 397
EcoO109I RGGNCCY 2 cut(s) 325, 333
EcoRII CCWGG 3 cut(s) 327, 392, 1191
EcoT14I CCWWGG 1 cut(s) 140
EcoT38I GRGCYC 4 cut(s) 63, 288, 392, 697
ErhI CCWWGG 1 cut(s) 140
FaeI CATG 5 cut(s) 144, 304, 506, 622, 1019
FalI AAGNNNNNCTT 2 cut(s) 816, 848
FaqI GGGAC 2 cut(s) 458, 560
FatI CATG 5 cut(s) 140, 300, 502, 618, 1015
FauI CCCGC 4 cut(s) 72, 101, 303, 727
Fnu4HI GCNGC 3 cut(s) 109, 347, 991
FokI GGATG 8 cut(s) 71, 209, 466, 555, 622, 681, 840, 1196
FriOI GRGCYC 4 cut(s) 63, 288, 392, 697
Fsp4HI GCNGC 3 cut(s) 109, 347, 991
FspBI CTAG 2 cut(s) 471, 1134
GlaI GCGC 3 cut(s) 146, 381, 469
GluI GCNGC 3 cut(s) 109, 347, 991
HaeII RGCGCY 2 cut(s) 148, 471
HaeIII GGCC 5 cut(s) 108, 952, 967, 990, 1097
HapII CCGG 7 cut(s) 68, 316, 409, 643, 698, 704, 782
HgaI GACGC 5 cut(s) 32, 91, 241, 284, 503
HhaI GCGC 3 cut(s) 147, 382, 470
Hin1I GRCGYC 2 cut(s) 276, 495
Hin1II CATG 5 cut(s) 144, 304, 506, 622, 1019
Hin6I GCGC 3 cut(s) 145, 380, 468
HinP1I GCGC 3 cut(s) 145, 380, 468
HinfI GANTC 9 cut(s) 236, 263, 412, 548, 655, 902, 1012, 1045, 1069
HpaII CCGG 7 cut(s) 68, 316, 409, 643, 698, 704, 782
HphI GGTGA 5 cut(s) 578, 583, 697, 763, 1066
Hpy166II GTNNAC 3 cut(s) 478, 921, 1139
Hpy188I TCNGA 7 cut(s) 173, 241, 433, 438, 542, 804, 1050
Hpy188III TCNNGA 6 cut(s) 503, 523, 661, 698, 1016, 1066
Hpy8I GTNNAC 3 cut(s) 478, 921, 1139
Hpy99I CGWCG 7 cut(s) 107, 134, 257, 278, 284, 433, 497
HpyAV CCTTC 9 cut(s) 429, 568, 600, 748, 818, 848, 942, 1154, 1193
HpyCH4III ACNGT 2 cut(s) 925, 1102
HpyCH4IV ACGT 1 cut(s) 363
HpyCH4V TGCA 6 cut(s) 11, 339, 354, 360, 676, 837
HpyF10VI GCNNNNNNNGC 4 cut(s) 53, 108, 424, 465
HpyF3I CTNAG 1 cut(s) 587
HpySE526I ACGT 1 cut(s) 363
Hsp92I GRCGYC 2 cut(s) 276, 495
Hsp92II CATG 5 cut(s) 144, 304, 506, 622, 1019
HspAI GCGC 3 cut(s) 145, 380, 468
Kpn2I TCCGGA 1 cut(s) 697
Kzo9I GATC 5 cut(s) 318, 433, 712, 1021, 1129
LmnI GCTCC 6 cut(s) 66, 152, 167, 387, 700, 700
Lsp1109I GCAGC 1 cut(s) 333
LweI GCATC 3 cut(s) 363, 659, 768
MaeI CTAG 2 cut(s) 471, 1134
MaeII ACGT 1 cut(s) 363
MaeIII GTNAC 3 cut(s) 305, 635, 685
MalI GATC 5 cut(s) 320, 435, 714, 1023, 1131
MbiI CCGCTC 1 cut(s) 298
MboI GATC 5 cut(s) 318, 433, 712, 1021, 1129
MboII GAAGA 6 cut(s) 29, 32, 451, 1031, 1069, 1180
MflI RGATCY 2 cut(s) 1021, 1129
MhlI GDGCHC 5 cut(s) 33, 63, 288, 392, 697
MluCI AATT 2 cut(s) 761, 1208
MlyI GAGTC 4 cut(s) 245, 542, 911, 1054
MmeI TCCRAC 2 cut(s) 264, 411
MroI TCCGGA 1 cut(s) 697
MseI TTAA 1 cut(s) 897
MspI CCGG 7 cut(s) 68, 316, 409, 643, 698, 704, 782
MspR9I CCNGG 4 cut(s) 329, 394, 643, 1193
Mva1269I GAATGC 1 cut(s) 47
MvaI CCWGG 3 cut(s) 329, 394, 1193
MvnI CGCG 3 cut(s) 102, 380, 662
MwoI GCNNNNNNNGC 4 cut(s) 53, 108, 424, 465
NciI CCSGG 1 cut(s) 643
NcoI CCATGG 1 cut(s) 140
NdeII GATC 5 cut(s) 318, 433, 712, 1021, 1129
NlaIII CATG 5 cut(s) 144, 304, 506, 622, 1019
NlaIV GGNNCC 6 cut(s) 326, 334, 389, 696, 702, 774
NmeAIII GCCGAG 1 cut(s) 82
NmuCI GTSAC 1 cut(s) 685
NruI TCGCGA 1 cut(s) 662
NspI RCATGY 1 cut(s) 622
PagI TCATGA 2 cut(s) 502, 1015
PceI AGGCCT 1 cut(s) 967
PcsI WCGNNNNNNNCGW 1 cut(s) 279
PctI GAATGC 1 cut(s) 47
PfeI GAWTC 5 cut(s) 263, 412, 655, 1012, 1069
PflFI GACNNNGTC 1 cut(s) 278
PflMI CCANNNNNTGG 1 cut(s) 141
PkrI GCNGC 3 cut(s) 110, 348, 992
PleI GAGTC 4 cut(s) 244, 542, 910, 1053
PpsI GAGTC 4 cut(s) 244, 542, 910, 1053
PpuMI RGGWCCY 2 cut(s) 325, 333
Psp124BI GAGCTC 2 cut(s) 63, 288
Psp5II RGGWCCY 2 cut(s) 325, 333
Psp6I CCWGG 3 cut(s) 327, 392, 1191
PspGI CCWGG 3 cut(s) 327, 392, 1191
PspN4I GGNNCC 6 cut(s) 326, 334, 389, 696, 702, 774
PspPI GGNCC 4 cut(s) 126, 325, 333, 951
PspPPI RGGWCCY 2 cut(s) 325, 333
PstI CTGCAG 1 cut(s) 13
PsuI RGATCY 2 cut(s) 1021, 1129
PsyI GACNNNGTC 1 cut(s) 278
RruI TCGCGA 1 cut(s) 662
RsaI GTAC 1 cut(s) 407
RsaNI GTAC 1 cut(s) 406
SacI GAGCTC 2 cut(s) 63, 288
SaqAI TTAA 1 cut(s) 897
SatI GCNGC 3 cut(s) 109, 347, 991
Sau3AI GATC 5 cut(s) 318, 433, 712, 1021, 1129
Sau96I GGNCC 4 cut(s) 126, 325, 333, 951
SchI GAGTC 4 cut(s) 245, 542, 911, 1054
ScrFI CCNGG 4 cut(s) 329, 394, 643, 1193
SduI GDGCHC 5 cut(s) 33, 63, 288, 392, 697
SfaNI GCATC 3 cut(s) 363, 659, 768
SfcI CTRYAG 2 cut(s) 9, 1217
SinI GGWCC 3 cut(s) 126, 325, 333
Sse9I AATT 2 cut(s) 761, 1208
SseBI AGGCCT 1 cut(s) 967
SspMI CTAG 2 cut(s) 471, 1134
SstI GAGCTC 2 cut(s) 63, 288
StuI AGGCCT 1 cut(s) 967
StyD4I CCNGG 4 cut(s) 327, 392, 641, 1191
StyI CCWWGG 1 cut(s) 140
TaaI ACNGT 2 cut(s) 925, 1102
TaiI ACGT 1 cut(s) 366
TaqI TCGA 5 cut(s) 156, 255, 261, 282, 715
TasI AATT 2 cut(s) 761, 1208
TauI GCSGC 2 cut(s) 111, 993
TfiI GAWTC 5 cut(s) 263, 412, 655, 1012, 1069
Tru1I TTAA 1 cut(s) 897
Tru9I TTAA 1 cut(s) 897
TseFI GTSAC 1 cut(s) 685
TseI GCWGC 1 cut(s) 346
Tsp45I GTSAC 1 cut(s) 685
TspDTI ATGAA 5 cut(s) 17, 491, 867, 896, 1032
TspGWI ACGGA 2 cut(s) 118, 495
Tth111I GACNNNGTC 1 cut(s) 278
Van91I CCANNNNNTGG 1 cut(s) 141
VpaK11BI GGWCC 3 cut(s) 126, 325, 333
XagI CCTNNNNNAGG 1 cut(s) 397
XapI RAATTY 1 cut(s) 761
XceI RCATGY 1 cut(s) 622
XspI CTAG 2 cut(s) 471, 1134
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.