Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0004460

Physical Location & Seq

Genomic Coordinates Reverse (-)

95754954 .. 95756651

Gene Structure 1698 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00074980.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1092 bp

ATGGCGGTCTCTAATCGACAGCTCCTACTTCAAAACCTCCACCTCCTTCATTCCACTCAGACCAAATCCAATCTCACTCTTATCCTCCGTAAGGACTCCGACCTCTACTGCGTCGATTTCGATTCGTTAAACGACGCCGTCGAGCTCACTCACCCGCTCATGTGTTACAGCAACCGAATTAGGGTTCTGGGGTCCTGCAACGGGCTGCTGTGCATCTGCAACGTGGCGGAGGACATCGCGTTGTGGAGCCCTTGGATTAAAAAGTACAGGATTCTGCCGTCCTTGCCGTCGGATCGAAAGAGGGACAAAGGTATGTGCTTGTGTGGTGCTAGGGTTTACGGGCTGGGATACGACGCCGTTCATGACGATTATAAATTGGTCAGGATTTCGCAATTTATTGGATGGGATTATGCGTCGTTTGAGAGTGAGGTGAAAGTTTATAGTCTGCGAATGAATGCGTGGAGAAAGGTGGATGACATGCCATATGTGCTGTGTTACACGCGAAAAATGGGGATTCTTGTGAGTGGATCTGTGCATTGGGTGGTGACGCGGAGTCATGAAGTGGATCAACCCGCAACCGAGTTGGTTATTGGATTTGATGTAGAGAAGGAGAGATTTGGGGAGGTGCCGATGCCGGAGATGGACCGGAAGTGTCAGATTGATGTGGGGTATTTGGAAGGGTGTCTTTGCATTATAGCCAAGTATGAAGATGTGGGTGTTGATGTTTGGACTATCAAACAGTATGGGGTTAAGGAGACTTGGTGTAAATTGTTTTCTGTGAAACAGGCTCAAGGCGTTAGAAGGACTAAGAGTATTAAGCCTCTGGTTTATTCAAAGAATGGTCGACAAGTTTTGCTGGAACAAAACCATGAAGATCTTGTTTGGTTTGACTTGGACAGTCAGATGGTCAATAAAATTAAGATTCGCGGTTTGCCAGATTTATTTGAGGCTATAGTCTGTGCGGAAACCCTTGTTCCGGTTGATCCTAGTAAACGAGAAGACAAGGAAAAAGAGGGAAAAAAGAATAAGAAGAGGGCTGAAGATGAAGATCCGGATCATACTTGCACCGATCATCAGAGTGAGCTAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBA_1

Protein Analysis

363

Amino Acids

41.78

Weight (kDa)

6.52

Isoelectric Point (pI)

34.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FBA_1	PF07734	28 - 309	2e-26	F-box associated beta propeller domain
FBA_3	PF08268	53 - 313	8.4e-19	F-box associated beta propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004460)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G12560 AT4G12560 AT4G12560 AT4G22390 AT4G22390
fragaria_vesca	FvH4_3g00900 FvH4_3g00900
malus_domestica	MD05G1358500.v1.1 MD10G1332600.v1.1
prunus_persica	Prupe.4G009600_v2.0.a1 Prupe.4G009600_v2.0.a1 Prupe.4G009600_v2.0.a1 Prupe.4G009600_v2.0.a1 Prupe.4G009600_v2.0.a1 Prupe.4G009600_v2.0.a1 Prupe.4G009600_v2.0.a1 Prupe.4G009600_v2.0.a1 Prupe.4G009600_v2.0.a1
pyrus_communis	pycom05g32420 pycom10g28200
rosa_chinensis	RchiOBHm_Chr5g0001381
rosa_laevigata	RLG00000030926
rosa_multiflora	Rmu_sc0001706.1_g000001 Rmu_sc0003749.1_g000016 Rmu_sc0016478.1_g000001
rosa_roxburghii	Rroxscaffold_1G00074980
rosa_rugosa	Rorug04G0390300
rosa_samantha	Rh5AG010700 Rh5BG013400 Rh5CG011700 Rh5DG011100
rosa_wichuraiana	Rw5G001020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	372
AccB1I	GGYRCC	1 cut(s)	625
AccBSI	CCGCTC	1 cut(s)	157
AccI	GTMKAC	1 cut(s)	844
AccII	CGCG	4 cut(s)	239, 502, 550, 927
AccIII	TCCGGA	1 cut(s)	1051
AciI	CCGC	7 cut(s)	5, 155, 227, 550, 573, 927, 962
AclWI	GGATC	6 cut(s)	300, 535, 573, 977, 1043, 1062
AcuI	CTGAAG	1 cut(s)	1059
AcyI	GRCGYC	2 cut(s)	135, 354
AfaI	GTAC	1 cut(s)	266
AfiI	CCNNNNNNNGG	4 cut(s)	91, 181, 201, 976
AgsI	TTSAA	2 cut(s)	32, 834
AhdI	GACNNNNNGTC	1 cut(s)	552
AluBI	AGCT	3 cut(s)	22, 145, 1084
AluI	AGCT	3 cut(s)	22, 145, 1084
Alw21I	GWGCWC	1 cut(s)	147
Alw26I	GTCTC	2 cut(s)	13, 749
AlwI	GGATC	6 cut(s)	300, 535, 573, 977, 1043, 1062
Aor13HI	TCCGGA	1 cut(s)	1051
ApeKI	GCWGC	1 cut(s)	205
AspS9I	GGNCC	2 cut(s)	192, 643
AsuHPI	GGTGA	3 cut(s)	143, 442, 556
AvaII	GGWCC	2 cut(s)	192, 643
BanI	GGYRCC	1 cut(s)	625
BanII	GRGCYC	2 cut(s)	147, 251
BbsI	GAAGAC	1 cut(s)	1005
Bbv12I	GWGCWC	1 cut(s)	147
BbvI	GCAGC	1 cut(s)	192
BccI	CCATC	3 cut(s)	396, 634, 898
BceAI	ACGGC	4 cut(s)	122, 262, 271, 341
BciVI	GTATCC	1 cut(s)	341
BcoDI	GTCTC	2 cut(s)	13, 749
BfaI	CTAG	2 cut(s)	330, 987
BfmI	CTRYAG	1 cut(s)	951
BfuI	GTATCC	1 cut(s)	341
BglII	AGATCT	1 cut(s)	874
BisI	GCNGC	1 cut(s)	206
BlsI	GCNGC	1 cut(s)	207
Bme18I	GGWCC	2 cut(s)	192, 643
BmeRI	GACNNNNNGTC	1 cut(s)	552
BmgT120I	GGNCC	2 cut(s)	192, 643
BmiI	GGNNCC	3 cut(s)	193, 248, 627
BmsI	GCATC	2 cut(s)	222, 621
BpiI	GAAGAC	1 cut(s)	1005
BpuEI	CTTGAG	1 cut(s)	774
BsaBI	GATNNNNATC	2 cut(s)	1047, 1053
BsaHI	GRCGYC	2 cut(s)	135, 354
BsaI	GGTCTC	1 cut(s)	13
BsaJI	CCNNGG	1 cut(s)	251
BsaWI	WCCGGW	3 cut(s)	645, 976, 1051
BsaXI	ACNNNNNCTCC	2 cut(s)	746, 776
Bsc4I	CCNNNNNNNGG	4 cut(s)	91, 181, 201, 976
Bse8I	GATNNNNATC	2 cut(s)	1047, 1053
BseAI	TCCGGA	1 cut(s)	1051
BseDI	CCNNGG	1 cut(s)	251
BseGI	GGATG	2 cut(s)	407, 478
BseJI	GATNNNNATC	2 cut(s)	1047, 1053
BseLI	CCNNNNNNNGG	4 cut(s)	91, 181, 201, 976
BseMII	CTCAG	1 cut(s)	71
BseXI	GCAGC	1 cut(s)	192
BseYI	CCCAGC	1 cut(s)	343
Bsh1236I	CGCG	4 cut(s)	239, 502, 550, 927
BshNI	GGYRCC	1 cut(s)	625
BsiHKAI	GWGCWC	1 cut(s)	147
BsiSI	CCGG	4 cut(s)	635, 646, 977, 1052
BslFI	GGGAC	1 cut(s)	317
BslI	CCNNNNNNNGG	4 cut(s)	91, 181, 201, 976
BsmAI	GTCTC	2 cut(s)	13, 749
BsmFI	GGGAC	1 cut(s)	317
BsmI	GAATGC	1 cut(s)	460
Bso31I	GGTCTC	1 cut(s)	13
Bsp1286I	GDGCHC	2 cut(s)	147, 251
Bsp13I	TCCGGA	1 cut(s)	1051
Bsp143I	GATC	8 cut(s)	292, 527, 565, 874, 982, 1048, 1054, 1069
BspACI	CCGC	7 cut(s)	5, 155, 227, 550, 573, 927, 962
BspCNI	CTCAG	1 cut(s)	70
BspEI	TCCGGA	1 cut(s)	1051
BspFNI	CGCG	4 cut(s)	239, 502, 550, 927
BspHI	TCATGA	2 cut(s)	361, 556
BspLI	GGNNCC	3 cut(s)	193, 248, 627
BspPI	GGATC	6 cut(s)	300, 535, 573, 977, 1043, 1062
BspT107I	GGYRCC	1 cut(s)	625
BspTNI	GGTCTC	1 cut(s)	13
BsrBI	CCGCTC	1 cut(s)	157
BssECI	CCNNGG	1 cut(s)	251
BssMI	GATC	8 cut(s)	292, 527, 565, 874, 982, 1048, 1054, 1069
BssNI	GRCGYC	2 cut(s)	135, 354
BssT1I	CCWWGG	1 cut(s)	251
Bst4CI	ACNGT	2 cut(s)	741, 899
Bst6I	CTCTTC	1 cut(s)	1025
BstACI	GRCGYC	2 cut(s)	135, 354
BstDEI	CTNAG	2 cut(s)	57, 807
BstENI	CCTNNNNNAGG	1 cut(s)	89
BstF5I	GGATG	2 cut(s)	407, 478
BstFNI	CGCG	4 cut(s)	239, 502, 550, 927
BstKTI	GATC	8 cut(s)	295, 530, 568, 877, 985, 1051, 1057, 1072
BstMAI	GTCTC	2 cut(s)	13, 749
BstMBI	GATC	8 cut(s)	292, 527, 565, 874, 982, 1048, 1054, 1069
BstMWI	GCNNNNNNNGC	2 cut(s)	283, 487
BstNSI	RCATGY	1 cut(s)	481
BstSFI	CTRYAG	1 cut(s)	951
BstUI	CGCG	4 cut(s)	239, 502, 550, 927
BstV1I	GCAGC	1 cut(s)	192
BstV2I	GAAGAC	1 cut(s)	1005
BstX2I	RGATCY	3 cut(s)	527, 874, 1048
BstYI	RGATCY	3 cut(s)	527, 874, 1048
BsuI	GTATCC	1 cut(s)	341
BtgZI	GCGATG	1 cut(s)	220
BtsCI	GGATG	2 cut(s)	407, 478
CciI	TCATGA	2 cut(s)	361, 556
Cfr13I	GGNCC	2 cut(s)	192, 643
CseI	GACGC	5 cut(s)	100, 143, 362, 402, 556
Csp6I	GTAC	1 cut(s)	265
CviAII	CATG	5 cut(s)	160, 362, 478, 557, 869
CviQI	GTAC	1 cut(s)	265
DdeI	CTNAG	2 cut(s)	57, 807
DpnI	GATC	8 cut(s)	294, 529, 567, 876, 984, 1050, 1056, 1071
DpnII	GATC	8 cut(s)	292, 527, 565, 874, 982, 1048, 1054, 1069
DriI	GACNNNNNGTC	1 cut(s)	552
Eam1104I	CTCTTC	1 cut(s)	1025
Eam1105I	GACNNNNNGTC	1 cut(s)	552
EarI	CTCTTC	1 cut(s)	1025
EciI	GGCGGA	1 cut(s)	242
Ecl136II	GAGCTC	1 cut(s)	145
Eco130I	CCWWGG	1 cut(s)	251
Eco24I	GRGCYC	2 cut(s)	147, 251
Eco31I	GGTCTC	1 cut(s)	13
Eco47I	GGWCC	2 cut(s)	192, 643
Eco53kI	GAGCTC	1 cut(s)	145
Eco57I	CTGAAG	1 cut(s)	1059
EcoICRI	GAGCTC	1 cut(s)	145
EcoNI	CCTNNNNNAGG	1 cut(s)	89
EcoO109I	RGGNCCY	1 cut(s)	192
EcoT14I	CCWWGG	1 cut(s)	251
EcoT38I	GRGCYC	2 cut(s)	147, 251
ErhI	CCWWGG	1 cut(s)	251
FaeI	CATG	5 cut(s)	163, 365, 481, 560, 872
FalI	AAGNNNNNCTT	2 cut(s)	669, 701
FaqI	GGGAC	1 cut(s)	317
FatI	CATG	5 cut(s)	159, 361, 477, 556, 868
FauI	CCCGC	2 cut(s)	162, 580
FauNDI	CATATG	1 cut(s)	484
FblI	GTMKAC	1 cut(s)	844
Fnu4HI	GCNGC	1 cut(s)	206
FokI	GGATG	2 cut(s)	414, 485
FriOI	GRGCYC	2 cut(s)	147, 251
Fsp4HI	GCNGC	1 cut(s)	206
FspBI	CTAG	2 cut(s)	330, 987
GluI	GCNGC	1 cut(s)	206
GsaI	CCCAGC	1 cut(s)	347
HapII	CCGG	4 cut(s)	635, 646, 977, 1052
HgaI	GACGC	5 cut(s)	100, 143, 362, 402, 556
Hin1I	GRCGYC	2 cut(s)	135, 354
Hin1II	CATG	5 cut(s)	163, 365, 481, 560, 872
HincII	GTYRAC	1 cut(s)	845
HindII	GTYRAC	1 cut(s)	845
HinfI	GANTC	6 cut(s)	95, 122, 271, 514, 553, 922
HpaII	CCGG	4 cut(s)	635, 646, 977, 1052
HphI	GGTGA	3 cut(s)	143, 442, 556
Hpy166II	GTNNAC	3 cut(s)	337, 845, 992
Hpy188I	TCNGA	6 cut(s)	60, 100, 292, 657, 903, 1077
Hpy188III	TCNNGA	4 cut(s)	362, 382, 557, 1052
Hpy8I	GTNNAC	3 cut(s)	337, 845, 992
Hpy99I	CGWCG	6 cut(s)	116, 137, 143, 292, 356, 418
HpyAV	CCTTC	4 cut(s)	56, 601, 671, 795
HpyCH4III	ACNGT	2 cut(s)	741, 899
HpyCH4IV	ACGT	1 cut(s)	222
HpyCH4V	TGCA	6 cut(s)	198, 213, 219, 535, 690, 1065
HpyF10VI	GCNNNNNNNGC	2 cut(s)	283, 487
HpyF3I	CTNAG	2 cut(s)	57, 807
HpySE526I	ACGT	1 cut(s)	222
Hsp92I	GRCGYC	2 cut(s)	135, 354
Hsp92II	CATG	5 cut(s)	163, 365, 481, 560, 872
Kpn2I	TCCGGA	1 cut(s)	1051
Kzo9I	GATC	8 cut(s)	292, 527, 565, 874, 982, 1048, 1054, 1069
LmnI	GCTCC	2 cut(s)	27, 246
Lsp1109I	GCAGC	1 cut(s)	192
LweI	GCATC	2 cut(s)	222, 621
MaeI	CTAG	2 cut(s)	330, 987
MaeII	ACGT	1 cut(s)	222
MaeIII	GTNAC	3 cut(s)	164, 494, 544
MalI	GATC	8 cut(s)	294, 529, 567, 876, 984, 1050, 1056, 1071
MbiI	CCGCTC	1 cut(s)	157
MboI	GATC	8 cut(s)	292, 527, 565, 874, 982, 1048, 1054, 1069
MboII	GAAGA	6 cut(s)	719, 884, 1010, 1042, 1052, 1058
MflI	RGATCY	3 cut(s)	527, 874, 1048
MhlI	GDGCHC	2 cut(s)	147, 251
MluCI	AATT	5 cut(s)	177, 374, 392, 767, 915
MlyI	GAGTC	2 cut(s)	89, 562
MmeI	TCCRAC	2 cut(s)	123, 270
MroI	TCCGGA	1 cut(s)	1051
MseI	TTAA	5 cut(s)	128, 258, 750, 816, 918
MslI	CAYNNNNRTG	1 cut(s)	1077
MspI	CCGG	4 cut(s)	635, 646, 977, 1052
Mva1269I	GAATGC	1 cut(s)	460
MvnI	CGCG	4 cut(s)	239, 502, 550, 927
MwoI	GCNNNNNNNGC	2 cut(s)	283, 487
NdeI	CATATG	1 cut(s)	484
NdeII	GATC	8 cut(s)	292, 527, 565, 874, 982, 1048, 1054, 1069
NlaIII	CATG	5 cut(s)	163, 365, 481, 560, 872
NlaIV	GGNNCC	3 cut(s)	193, 248, 627
NmuCI	GTSAC	1 cut(s)	544
NspI	RCATGY	1 cut(s)	481
PagI	TCATGA	2 cut(s)	361, 556
PcsI	WCGNNNNNNNCGW	1 cut(s)	138
PctI	GAATGC	1 cut(s)	460
PfeI	GAWTC	4 cut(s)	122, 271, 514, 922
PflFI	GACNNNGTC	1 cut(s)	137
PkrI	GCNGC	1 cut(s)	207
PleI	GAGTC	2 cut(s)	89, 561
PpsI	GAGTC	2 cut(s)	89, 561
PpuMI	RGGWCCY	1 cut(s)	192
PsiI	TTATAA	1 cut(s)	372
Psp124BI	GAGCTC	1 cut(s)	147
Psp5II	RGGWCCY	1 cut(s)	192
PspFI	CCCAGC	1 cut(s)	343
PspN4I	GGNNCC	3 cut(s)	193, 248, 627
PspPI	GGNCC	2 cut(s)	192, 643
PspPPI	RGGWCCY	1 cut(s)	192
PsuI	RGATCY	3 cut(s)	527, 874, 1048
PsyI	GACNNNGTC	1 cut(s)	137
RsaI	GTAC	1 cut(s)	266
RsaNI	GTAC	1 cut(s)	265
RseI	CAYNNNNRTG	1 cut(s)	1077
SacI	GAGCTC	1 cut(s)	147
SalI	GTCGAC	1 cut(s)	843
SaqAI	TTAA	5 cut(s)	128, 258, 750, 816, 918
SatI	GCNGC	1 cut(s)	206
Sau3AI	GATC	8 cut(s)	292, 527, 565, 874, 982, 1048, 1054, 1069
Sau96I	GGNCC	2 cut(s)	192, 643
SchI	GAGTC	2 cut(s)	89, 562
SduI	GDGCHC	2 cut(s)	147, 251
SfaNI	GCATC	2 cut(s)	222, 621
SfcI	CTRYAG	1 cut(s)	951
SinI	GGWCC	2 cut(s)	192, 643
SmiMI	CAYNNNNRTG	1 cut(s)	1077
SmlI	CTYRAG	1 cut(s)	789
SmoI	CTYRAG	1 cut(s)	789
Sse9I	AATT	5 cut(s)	177, 374, 392, 767, 915
SsiI	CCGC	7 cut(s)	5, 155, 227, 550, 573, 927, 962
SspMI	CTAG	2 cut(s)	330, 987
SstI	GAGCTC	1 cut(s)	147
StyI	CCWWGG	1 cut(s)	251
TaaI	ACNGT	2 cut(s)	741, 899
TaiI	ACGT	1 cut(s)	225
TaqI	TCGA	6 cut(s)	16, 114, 120, 141, 295, 844
TasI	AATT	5 cut(s)	177, 374, 392, 767, 915
TatI	WGTACW	1 cut(s)	264
TfiI	GAWTC	4 cut(s)	122, 271, 514, 922
Tru1I	TTAA	5 cut(s)	128, 258, 750, 816, 918
Tru9I	TTAA	5 cut(s)	128, 258, 750, 816, 918
TseFI	GTSAC	1 cut(s)	544
TseI	GCWGC	1 cut(s)	205
Tsp45I	GTSAC	1 cut(s)	544
TspDTI	ATGAA	7 cut(s)	38, 350, 467, 573, 720, 885, 1059
TspGWI	ACGGA	1 cut(s)	77
Tth111I	GACNNNGTC	1 cut(s)	137
VpaK11BI	GGWCC	2 cut(s)	192, 643
XagI	CCTNNNNNAGG	1 cut(s)	89
XceI	RCATGY	1 cut(s)	481
XmiI	GTMKAC	1 cut(s)	844
XspI	CTAG	2 cut(s)	330, 987

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.