Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004460

Physical Location & Seq

Genomic Coordinates Reverse (-)

11813313 .. 11815164

Gene Structure 1852 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G22390.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1209 bp

ATGGCGGAATGTCCGACGGATCTCATCAACGAAATGTTTCTCCGTCTCAGAGCAACTACGCTCGTAAAGTGTCGCGTCCTCTCAAAGCCTTGCTTCTCTTTGATCGACAGTCCCGAGTTCGTCTCATCTCATCTCCGTCGCAGACTCGAAACGGGAGAACATCTCATGATCTTACTCCGAGGACCTCGTCTTCTACGCACGGTGGAGCTAGACTCGCCTGAGAACGTCTCCGACATCCCTCATCCTTTACAAGCCGGAGGTTTTACAGAGGTTTTTGGTTCATTTAACGGTGTCATAGGGTTATGTAACTCTCCTGTTGATCTAGCGATCTTTAATCCTTCGACTAGGAAGATTCACCGTTTACCAATTGAGCCAATTGATTTCCCAGAACGTGACATCACTCGTGAGTATGTGTTTTACGGTTTGGGTTATGATTCTGTGGGCGATGACTTTAAAGTTGTGAGGATTGTTCAGTGTAAGCTTAAAGAAGGTAAAAAGAAATTTCCTTGCCCTGTTGAAGTCAAAGTTTTCAGCTTGAAGAAGAATTCGTGGAAGAGAGTGTGTCTTATGTTCGAGTTTCAGATTCTTTGGATTTCGTACTATTACCATCTCTTGCCTCGTCGTGGCTATGGTGTGGTTGTTAACAACCATCTTCACTGGATTTTGCCTCGAAGGCAGGGAGTCATTGCCTTTAACGCGATAATCAAATATGATCTTGCCTCTGATGACATTGGAGTCCTCAGTTTCCCACAGGAGCTTTACATTGAAGATAACATGGATATTGGTGTGTTAGATGGCTGCGTTTGTTTGATGTGTTACGACGAGTATAGCCATGTTGATGTTTGGGTTTTGAAAGAGTATGAGGATTATAAATCTTGGACTAAGCTGTATAGGGTGCCGAAACCAGAGAGTGTTGAATCGGTTGAGTTCATTAGACCTCTGATCTGTTCCAAGGACAGGAGCAAGATTTTGCTGGAGATTAACAATGCGGCGAATCTCATGTGGTTTGATTTGGAAAGTCAGAGTCTTACAACTGCCGGAATAGAGTGTGATAGTTCATTTACCGCAGACATCCTCGTGAGTAGCCTTGTTTTGGGATGTAAAGGAGATCCTACTCAAGCTCAGCGCAGTAAAGATCAGAAGATGATGCCAAAGAGTACTAAAAGGTGGGATGGTTTTCTGTCCAAGGGATTCAAGCTGAAGCTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009892 GO:0009894 GO:0009895 GO:0009987 GO:0010498 GO:0010605 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0031146 GO:0031347 GO:0031348 GO:0032446 GO:0036211 GO:0042176 GO:0042177 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044464 GO:0048519 GO:0048583 GO:0048585 GO:0050789 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051603 GO:0060255 GO:0065007 GO:0070647 GO:0071704 GO:0080090 GO:0080134 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBA_1 FBA_3

Protein Analysis

402

Amino Acids

46.19

Weight (kDa)

7.49

Isoelectric Point (pI)

49.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FBA_3	PF08268	88 - 346	1.9e-14	F-box associated beta propeller domain
FBA_1	PF07734	105 - 318	3.8e-15	F-box associated beta propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004460)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G12560 AT4G12560 AT4G12560 AT4G22390 AT4G22390
fragaria_vesca	FvH4_3g00900 FvH4_3g00900
malus_domestica	MD05G1358500.v1.1 MD10G1332600.v1.1
prunus_persica	Prupe.4G009600_v2.0.a1 Prupe.4G009600_v2.0.a1 Prupe.4G009600_v2.0.a1 Prupe.4G009600_v2.0.a1 Prupe.4G009600_v2.0.a1 Prupe.4G009600_v2.0.a1 Prupe.4G009600_v2.0.a1 Prupe.4G009600_v2.0.a1 Prupe.4G009600_v2.0.a1
pyrus_communis	pycom05g32420 pycom10g28200
rosa_chinensis	RchiOBHm_Chr5g0001381
rosa_laevigata	RLG00000030926
rosa_multiflora	Rmu_sc0001706.1_g000001 Rmu_sc0003749.1_g000016 Rmu_sc0016478.1_g000001
rosa_roxburghii	Rroxscaffold_1G00074980
rosa_rugosa	Rorug04G0390300
rosa_samantha	Rh5AG010700 Rh5BG013400 Rh5CG011700 Rh5DG011100
rosa_wichuraiana	Rw5G001020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	870
AasI	GACNNNNNNGTC	1 cut(s)	734
AccB1I	GGYRCC	1 cut(s)	895
AccII	CGCG	2 cut(s)	75, 698
AciI	CCGC	3 cut(s)	5, 989, 1065
AclWI	GGATC	2 cut(s)	27, 1103
AcsI	RAATTY	2 cut(s)	500, 544
AfaI	GTAC	2 cut(s)	599, 1159
AfiI	CCNNNNNNNGG	3 cut(s)	623, 957, 1093
AgsI	TTSAA	6 cut(s)	518, 538, 767, 853, 917, 1195
AluBI	AGCT	8 cut(s)	208, 481, 534, 757, 886, 1121, 1198, 1204
AluI	AGCT	8 cut(s)	208, 481, 534, 757, 886, 1121, 1198, 1204
Alw26I	GTCTC	3 cut(s)	50, 127, 232
AlwI	GGATC	2 cut(s)	27, 1103
Ama87I	CYCGRG	1 cut(s)	113
ApeKI	GCWGC	1 cut(s)	798
ApoI	RAATTY	2 cut(s)	500, 544
Asp700I	GAANNNNTTC	1 cut(s)	36
AspLEI	GCGC	1 cut(s)	1128
AspS9I	GGNCC	1 cut(s)	182
AsuHPI	GGTGA	1 cut(s)	347
AvaI	CYCGRG	1 cut(s)	113
AvaII	GGWCC	1 cut(s)	182
BanI	GGYRCC	1 cut(s)	895
BauI	CACGAG	2 cut(s)	402, 1076
BbsI	GAAGAC	1 cut(s)	182
BbvI	GCAGC	1 cut(s)	785
BccI	CCATC	4 cut(s)	615, 657, 788, 1166
BcoDI	GTCTC	3 cut(s)	50, 127, 232
BfaI	CTAG	3 cut(s)	209, 323, 345
BglI	GCCNNNNNGGC	1 cut(s)	673
BisI	GCNGC	2 cut(s)	799, 990
BlpI	GCTNAGC	1 cut(s)	1122
BlsI	GCNGC	2 cut(s)	800, 991
BmcAI	AGTACT	1 cut(s)	1159
Bme18I	GGWCC	1 cut(s)	182
BmeT110I	CYCGRG	1 cut(s)	113
BmgT120I	GGNCC	1 cut(s)	182
BmiI	GGNNCC	1 cut(s)	897
BmsI	GCATC	1 cut(s)	1137
BpiI	GAAGAC	1 cut(s)	182
BplI	GAGNNNNNCTC	8 cut(s)	107, 139, 147, 179, 197, 229, 212, 244
BpmI	CTGGAG	1 cut(s)	995
Bpu1102I	GCTNAGC	1 cut(s)	1122
BpuEI	CTTGAG	1 cut(s)	1101
BsaJI	CCNNGG	3 cut(s)	178, 951, 1185
Bsc4I	CCNNNNNNNGG	3 cut(s)	623, 957, 1093
Bse1I	ACTGG	1 cut(s)	662
Bse3DI	GCAATG	1 cut(s)	684
BseDI	CCNNGG	3 cut(s)	178, 951, 1185
BseGI	GGATG	5 cut(s)	234, 241, 1071, 1103, 1177
BseLI	CCNNNNNNNGG	3 cut(s)	623, 957, 1093
BseMI	GCAATG	1 cut(s)	684
BseMII	CTCAG	4 cut(s)	61, 210, 754, 1136
BseNI	ACTGG	1 cut(s)	662
BseXI	GCAGC	1 cut(s)	785
Bsh1236I	CGCG	2 cut(s)	75, 698
BshNI	GGYRCC	1 cut(s)	895
BsiHKCI	CYCGRG	1 cut(s)	113
BsiSI	CCGG	2 cut(s)	255, 1038
BslFI	GGGAC	1 cut(s)	96
BslI	CCNNNNNNNGG	3 cut(s)	623, 957, 1093
BsmAI	GTCTC	3 cut(s)	50, 127, 232
BsmBI	CGTCTC	3 cut(s)	50, 127, 232
BsmFI	GGGAC	1 cut(s)	96
BsoBI	CYCGRG	1 cut(s)	113
Bsp143I	GATC	9 cut(s)	19, 102, 168, 319, 327, 712, 942, 1108, 1135
Bsp1720I	GCTNAGC	1 cut(s)	1122
BspACI	CCGC	3 cut(s)	5, 989, 1065
BspCNI	CTCAG	4 cut(s)	60, 211, 753, 1135
BspFNI	CGCG	2 cut(s)	75, 698
BspHI	TCATGA	1 cut(s)	165
BspLI	GGNNCC	1 cut(s)	897
BspPI	GGATC	2 cut(s)	27, 1103
BspT107I	GGYRCC	1 cut(s)	895
BsrDI	GCAATG	1 cut(s)	684
BsrI	ACTGG	1 cut(s)	662
BssECI	CCNNGG	3 cut(s)	178, 951, 1185
BssMI	GATC	9 cut(s)	19, 102, 168, 319, 327, 712, 942, 1108, 1135
BssSI	CACGAG	2 cut(s)	402, 1076
BssT1I	CCWWGG	2 cut(s)	951, 1185
Bst2BI	CACGAG	2 cut(s)	402, 1076
Bst4CI	ACNGT	5 cut(s)	110, 202, 290, 359, 422
Bst6I	CTCTTC	1 cut(s)	548
BstDEI	CTNAG	5 cut(s)	47, 219, 740, 882, 1122
BstF5I	GGATG	5 cut(s)	234, 241, 1071, 1103, 1177
BstFNI	CGCG	2 cut(s)	75, 698
BstHHI	GCGC	1 cut(s)	1128
BstKTI	GATC	9 cut(s)	22, 105, 171, 322, 330, 715, 945, 1111, 1138
BstMAI	GTCTC	3 cut(s)	50, 127, 232
BstMBI	GATC	9 cut(s)	19, 102, 168, 319, 327, 712, 942, 1108, 1135
BstMWI	GCNNNNNNNGC	3 cut(s)	214, 673, 695
BstUI	CGCG	2 cut(s)	75, 698
BstV1I	GCAGC	1 cut(s)	785
BstV2I	GAAGAC	1 cut(s)	182
BstX2I	RGATCY	2 cut(s)	19, 1108
BstYI	RGATCY	2 cut(s)	19, 1108
BtgZI	GCGATG	1 cut(s)	459
BtsCI	GGATG	5 cut(s)	234, 241, 1071, 1103, 1177
BtsIMutI	CAGTG	2 cut(s)	479, 655
CciI	TCATGA	1 cut(s)	165
CfoI	GCGC	1 cut(s)	1128
Cfr13I	GGNCC	1 cut(s)	182
CseI	GACGC	1 cut(s)	64
Csp6I	GTAC	2 cut(s)	598, 1158
CviAII	CATG	4 cut(s)	166, 775, 833, 1000
CviQI	GTAC	2 cut(s)	598, 1158
DdeI	CTNAG	5 cut(s)	47, 219, 740, 882, 1122
DpnI	GATC	9 cut(s)	21, 104, 170, 321, 329, 714, 944, 1110, 1137
DpnII	GATC	9 cut(s)	19, 102, 168, 319, 327, 712, 942, 1108, 1135
DraI	TTTAAA	1 cut(s)	454
DrdI	GACNNNNNNGTC	1 cut(s)	734
DseDI	GACNNNNNNGTC	1 cut(s)	734
Eam1104I	CTCTTC	1 cut(s)	548
EarI	CTCTTC	1 cut(s)	548
EciI	GGCGGA	1 cut(s)	20
Eco130I	CCWWGG	2 cut(s)	951, 1185
Eco47I	GGWCC	1 cut(s)	182
Eco88I	CYCGRG	1 cut(s)	113
EcoO109I	RGGNCCY	1 cut(s)	182
EcoRI	GAATTC	1 cut(s)	544
EcoT14I	CCWWGG	2 cut(s)	951, 1185
ErhI	CCWWGG	2 cut(s)	951, 1185
Esp3I	CGTCTC	3 cut(s)	50, 127, 232
FaeI	CATG	4 cut(s)	169, 778, 836, 1003
FalI	AAGNNNNNCTT	2 cut(s)	77, 109
FaqI	GGGAC	1 cut(s)	96
FatI	CATG	4 cut(s)	165, 774, 832, 999
Fnu4HI	GCNGC	2 cut(s)	799, 990
FokI	GGATG	5 cut(s)	221, 228, 1058, 1110, 1184
Fsp4HI	GCNGC	2 cut(s)	799, 990
FspBI	CTAG	3 cut(s)	209, 323, 345
GlaI	GCGC	1 cut(s)	1127
GluI	GCNGC	2 cut(s)	799, 990
GsuI	CTGGAG	1 cut(s)	995
HapII	CCGG	2 cut(s)	255, 1038
HgaI	GACGC	1 cut(s)	64
HhaI	GCGC	1 cut(s)	1128
Hin1II	CATG	4 cut(s)	169, 778, 836, 1003
Hin6I	GCGC	1 cut(s)	1126
HinP1I	GCGC	1 cut(s)	1126
HincII	GTYRAC	1 cut(s)	643
HindII	GTYRAC	1 cut(s)	643
HindIII	AAGCTT	1 cut(s)	479
HpaI	GTTAAC	1 cut(s)	643
HpaII	CCGG	2 cut(s)	255, 1038
HphI	GGTGA	1 cut(s)	347
Hpy166II	GTNNAC	2 cut(s)	362, 643
Hpy188I	TCNGA	9 cut(s)	15, 50, 179, 232, 582, 724, 942, 1023, 1140
Hpy188III	TCNNGA	4 cut(s)	113, 166, 404, 1078
Hpy8I	GTNNAC	2 cut(s)	362, 643
Hpy99I	CGWCG	4 cut(s)	19, 141, 624, 824
HpyAV	CCTTC	3 cut(s)	348, 482, 666
HpyCH4III	ACNGT	5 cut(s)	110, 202, 290, 359, 422
HpyCH4IV	ACGT	2 cut(s)	225, 391
HpyF10VI	GCNNNNNNNGC	3 cut(s)	214, 673, 695
HpyF3I	CTNAG	5 cut(s)	47, 219, 740, 882, 1122
HpySE526I	ACGT	2 cut(s)	225, 391
Hsp92II	CATG	4 cut(s)	169, 778, 836, 1003
HspAI	GCGC	1 cut(s)	1126
KspAI	GTTAAC	1 cut(s)	643
Kzo9I	GATC	9 cut(s)	19, 102, 168, 319, 327, 712, 942, 1108, 1135
LmnI	GCTCC	3 cut(s)	205, 754, 960
Lsp1109I	GCAGC	1 cut(s)	785
LweI	GCATC	1 cut(s)	1137
MaeI	CTAG	3 cut(s)	209, 323, 345
MaeII	ACGT	2 cut(s)	225, 391
MaeIII	GTNAC	3 cut(s)	305, 392, 815
MalI	GATC	9 cut(s)	21, 104, 170, 321, 329, 714, 944, 1110, 1137
MboI	GATC	9 cut(s)	19, 102, 168, 319, 327, 712, 942, 1108, 1135
MboII	GAAGA	8 cut(s)	182, 361, 550, 553, 565, 644, 779, 1153
MfeI	CAATTG	2 cut(s)	366, 375
MflI	RGATCY	2 cut(s)	19, 1108
MluCI	AATT	4 cut(s)	366, 375, 500, 544
MlyI	GAGTC	5 cut(s)	138, 206, 690, 744, 1033
MmeI	TCCRAC	2 cut(s)	38, 255
MroXI	GAANNNNTTC	1 cut(s)	36
MseI	TTAA	7 cut(s)	285, 333, 453, 483, 642, 693, 981
MslI	CAYNNNNRTG	2 cut(s)	837, 1076
MspI	CCGG	2 cut(s)	255, 1038
MunI	CAATTG	2 cut(s)	366, 375
MvnI	CGCG	2 cut(s)	75, 698
MwoI	GCNNNNNNNGC	3 cut(s)	214, 673, 695
NdeII	GATC	9 cut(s)	19, 102, 168, 319, 327, 712, 942, 1108, 1135
NlaIII	CATG	4 cut(s)	169, 778, 836, 1003
NlaIV	GGNNCC	1 cut(s)	897
NmuCI	GTSAC	1 cut(s)	392
PagI	TCATGA	1 cut(s)	165
PcsI	WCGNNNNNNNCGW	1 cut(s)	111
PdmI	GAANNNNTTC	1 cut(s)	36
PfeI	GAWTC	6 cut(s)	352, 434, 583, 917, 994, 1191
PflFI	GACNNNGTC	1 cut(s)	186
PkrI	GCNGC	2 cut(s)	800, 991
PleI	GAGTC	5 cut(s)	138, 206, 689, 743, 1032
PpsI	GAGTC	5 cut(s)	138, 206, 689, 743, 1032
PpuMI	RGGWCCY	1 cut(s)	182
PsiI	TTATAA	1 cut(s)	870
Psp5II	RGGWCCY	1 cut(s)	182
PspN4I	GGNNCC	1 cut(s)	897
PspPI	GGNCC	1 cut(s)	182
PspPPI	RGGWCCY	1 cut(s)	182
PsuI	RGATCY	2 cut(s)	19, 1108
PsyI	GACNNNGTC	1 cut(s)	186
RsaI	GTAC	2 cut(s)	599, 1159
RsaNI	GTAC	2 cut(s)	598, 1158
RseI	CAYNNNNRTG	2 cut(s)	837, 1076
SaqAI	TTAA	7 cut(s)	285, 333, 453, 483, 642, 693, 981
SatI	GCNGC	2 cut(s)	799, 990
Sau3AI	GATC	9 cut(s)	19, 102, 168, 319, 327, 712, 942, 1108, 1135
Sau96I	GGNCC	1 cut(s)	182
ScaI	AGTACT	1 cut(s)	1159
SchI	GAGTC	5 cut(s)	138, 206, 690, 744, 1033
SfaNI	GCATC	1 cut(s)	1137
SinI	GGWCC	1 cut(s)	182
SmiMI	CAYNNNNRTG	2 cut(s)	837, 1076
SmlI	CTYRAG	1 cut(s)	1116
SmoI	CTYRAG	1 cut(s)	1116
Sse9I	AATT	4 cut(s)	366, 375, 500, 544
SsiI	CCGC	3 cut(s)	5, 989, 1065
SspMI	CTAG	3 cut(s)	209, 323, 345
StyI	CCWWGG	2 cut(s)	951, 1185
TaaI	ACNGT	5 cut(s)	110, 202, 290, 359, 422
TaiI	ACGT	2 cut(s)	228, 394
TaqI	TCGA	5 cut(s)	105, 147, 341, 573, 670
TasI	AATT	4 cut(s)	366, 375, 500, 544
TatI	WGTACW	1 cut(s)	1157
TauI	GCSGC	1 cut(s)	992
TfiI	GAWTC	6 cut(s)	352, 434, 583, 917, 994, 1191
Tru1I	TTAA	7 cut(s)	285, 333, 453, 483, 642, 693, 981
Tru9I	TTAA	7 cut(s)	285, 333, 453, 483, 642, 693, 981
TscAI	CASTG	2 cut(s)	479, 662
TseFI	GTSAC	1 cut(s)	392
TseI	GCWGC	1 cut(s)	798
Tsp45I	GTSAC	1 cut(s)	392
TspDTI	ATGAA	3 cut(s)	270, 919, 1047
TspGWI	ACGGA	3 cut(s)	32, 32, 125
TspRI	CASTG	2 cut(s)	479, 662
Tth111I	GACNNNGTC	1 cut(s)	186
VpaK11BI	GGWCC	1 cut(s)	182
XapI	RAATTY	2 cut(s)	500, 544
XmnI	GAANNNNTTC	1 cut(s)	36
XspI	CTAG	3 cut(s)	209, 323, 345
ZrmI	AGTACT	1 cut(s)	1159

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.