Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0004460

Physical Location & Seq

Genomic Coordinates Forward (+)

742989 .. 744951

Gene Structure 1963 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG010700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1224 bp

ATGAAATCTGCAGAAGATGAACCCTCCACAGACGCCCAGCACCGCCAAATCCAAGCCTTCCTGGCCGAGCTCCCGCCGGAGGTAATCATCAACATCCTCTCCCGCCTCCACGTCGGCCGCCTCCTCTGTTTCAGGTCCGTCGCCAGACCATGGCGGTCCCTAATCGACAGCTCCTACTTCAAAAACCTCCACCTCCTTCATTCCACTGAGACCAAATCCAATCTCACTCTTATCCTCCGTAAGGACTCCGACCTCTACTGCGTCGATTTCGATTCTTTAAACGATGCCGTCGAGCTCAATCACCCGCTCATGTGTTACAGCAACCGAATTAGGGTTCTGGGGTCCTGCAACGGCCTGCTGTGCATCTGCAACGTGGCGGAGGACATCGCGTTGTGGAGCCCTTGGATTAAGAAGTACCGGATTCTGCCGTCTTTGCCGTCGGATCGAAAGAGGGACAAAGGTATGTGCTTGTGTGGTGCTAGGGTTTACGGGCTGGGATACGACGCCGTTCATGACGATTATAAATTGGTCAGGATTTCGCAGTTTATCGGATGGGATTATGCGTCGTTTGAGAGTGAGGTGAAAGTTTATAGTCTGAGAATGAATGCGTGGAGAAAGGTGGATGACATGCCGTATGTGCTGTGTTACACGCGAAAAATGGGGATTCTTGTGAGTGGATCTGTGCATTGGGTGGTGACGCGGAGTCATGAAGTGGATCAACCCGCAACCGAGTTGGTTATTGGATTTGATGTAGAGAAGGAGAGATTTGGGGAGGTGCCGATGCCGGAGATGGACCGGAAGTGTCAGATTGATGTGGGGTATTTGGAAGGGTGTCTTTGCATTATAGCCAAGTATGAAGATATGGGTGTTGATGTTTGGACTATCAAACAGTATGGGGTTAAGGAGACTTGGTGTAAATTGTTTACTGTGAAACAGGCTCAAGGGGTTAGAAGGCCTAAGAGTATTAAGCCTCTGGTTTATTCAAAGAATCGTCGACAAGTTTTGCTGGAACAAAACCATGAAGATCTTGTTTGGTTTGACTTGGAAAGTCAGATGGTCAATAAAATTAAGATTCGCGGTTTGCCAGATTTATTTGAGGCTATAGTCTGTGCGGAAACCCTTGTTCCGGTTGATCCTAGTAAACGAGAAGACAAGGAAAAAGAGGGAAAAAAGAATAAGAAGAGGGATGATTTCCTAGCAGAAGGCTTCAAATTGGTGCTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBA_1

Protein Analysis

407

Amino Acids

47.01

Weight (kDa)

7.85

Isoelectric Point (pI)

38.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box-like	PF12937	22 - 59	7.5e-06	F-box-like
F-box	PF00646	23 - 61	3.6e-07	F-box domain
FBA_1	PF07734	78 - 358	1.4e-26	F-box associated beta propeller domain
FBA_3	PF08268	104 - 363	1.3e-17	F-box associated beta propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004460)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G12560 AT4G12560 AT4G12560 AT4G22390 AT4G22390
fragaria_vesca	FvH4_3g00900 FvH4_3g00900
malus_domestica	MD05G1358500.v1.1 MD10G1332600.v1.1
prunus_persica	Prupe.4G009600_v2.0.a1 Prupe.4G009600_v2.0.a1 Prupe.4G009600_v2.0.a1 Prupe.4G009600_v2.0.a1 Prupe.4G009600_v2.0.a1 Prupe.4G009600_v2.0.a1 Prupe.4G009600_v2.0.a1 Prupe.4G009600_v2.0.a1 Prupe.4G009600_v2.0.a1
pyrus_communis	pycom05g32420 pycom10g28200
rosa_chinensis	RchiOBHm_Chr5g0001381
rosa_laevigata	RLG00000030926
rosa_multiflora	Rmu_sc0001706.1_g000001 Rmu_sc0003749.1_g000016 Rmu_sc0016478.1_g000001
rosa_roxburghii	Rroxscaffold_1G00074980
rosa_rugosa	Rorug04G0390300
rosa_samantha	Rh5AG010700 Rh5BG013400 Rh5CG011700 Rh5DG011100
rosa_wichuraiana	Rw5G001020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	522
AccB1I	GGYRCC	1 cut(s)	775
AccB7I	CCANNNNNTGG	1 cut(s)	150
AccBSI	CCGCTC	1 cut(s)	307
AccI	GTMKAC	1 cut(s)	994
AccII	CGCG	4 cut(s)	389, 652, 700, 1077
AclWI	GGATC	4 cut(s)	450, 685, 723, 1127
AcoI	YGGCCR	2 cut(s)	63, 115
AcyI	GRCGYC	2 cut(s)	33, 504
AfaI	GTAC	1 cut(s)	416
AfiI	CCNNNNNNNGG	5 cut(s)	79, 150, 241, 331, 1126
AgsI	TTSAA	3 cut(s)	181, 984, 1210
AhdI	GACNNNNNGTC	1 cut(s)	702
AjiI	CACGTC	1 cut(s)	112
AjnI	CCWGG	1 cut(s)	60
AluBI	AGCT	3 cut(s)	70, 171, 295
AluI	AGCT	3 cut(s)	70, 171, 295
Alw21I	GWGCWC	2 cut(s)	72, 297
Alw26I	GTCTC	2 cut(s)	203, 899
AlwI	GGATC	4 cut(s)	450, 685, 723, 1127
AoxI	GGCC	4 cut(s)	63, 115, 352, 953
AspS9I	GGNCC	4 cut(s)	135, 156, 342, 793
AsuHPI	GGTGA	3 cut(s)	293, 592, 706
AvaII	GGWCC	4 cut(s)	135, 156, 342, 793
BanI	GGYRCC	1 cut(s)	775
BanII	GRGCYC	3 cut(s)	72, 297, 401
BbsI	GAAGAC	1 cut(s)	1155
Bbv12I	GWGCWC	2 cut(s)	72, 297
BccI	CCATC	3 cut(s)	546, 784, 1048
BceAI	ACGGC	6 cut(s)	272, 367, 412, 421, 491, 616
BciT130I	CCWGG	1 cut(s)	62
BciVI	GTATCC	1 cut(s)	491
BcoDI	GTCTC	2 cut(s)	203, 899
BfaI	CTAG	3 cut(s)	480, 1137, 1196
BfmI	CTRYAG	2 cut(s)	9, 1101
BfuI	GTATCC	1 cut(s)	491
BglI	GCCNNNNNGGC	1 cut(s)	62
BglII	AGATCT	1 cut(s)	1024
BisI	GCNGC	1 cut(s)	118
BlsI	GCNGC	1 cut(s)	119
Bme1390I	CCNGG	1 cut(s)	62
Bme18I	GGWCC	4 cut(s)	135, 156, 342, 793
BmeRI	GACNNNNNGTC	1 cut(s)	702
BmgBI	CACGTC	1 cut(s)	112
BmgT120I	GGNCC	4 cut(s)	135, 156, 342, 793
BmiI	GGNNCC	4 cut(s)	158, 343, 398, 777
BmrFI	CCNGG	1 cut(s)	62
BmsI	GCATC	3 cut(s)	274, 372, 771
BpiI	GAAGAC	1 cut(s)	1155
BpuEI	CTTGAG	1 cut(s)	924
BsaHI	GRCGYC	2 cut(s)	33, 504
BsaI	GGTCTC	1 cut(s)	203
BsaJI	CCNNGG	2 cut(s)	149, 401
BsaWI	WCCGGW	3 cut(s)	417, 795, 1126
BsaXI	ACNNNNNCTCC	4 cut(s)	83, 113, 896, 926
Bsc4I	CCNNNNNNNGG	5 cut(s)	79, 150, 241, 331, 1126
BseBI	CCWGG	1 cut(s)	62
BseDI	CCNNGG	2 cut(s)	149, 401
BseGI	GGATG	4 cut(s)	93, 557, 628, 1192
BseLI	CCNNNNNNNGG	5 cut(s)	79, 150, 241, 331, 1126
BseMII	CTCAG	2 cut(s)	198, 587
BseRI	GAGGAG	1 cut(s)	113
BseX3I	CGGCCG	1 cut(s)	115
BseYI	CCCAGC	2 cut(s)	36, 493
Bsh1236I	CGCG	4 cut(s)	389, 652, 700, 1077
Bsh1285I	CGRYCG	1 cut(s)	118
BshFI	GGCC	4 cut(s)	65, 117, 354, 955
BshNI	GGYRCC	1 cut(s)	775
BsiEI	CGRYCG	1 cut(s)	118
BsiHKAI	GWGCWC	2 cut(s)	72, 297
BsiSI	CCGG	5 cut(s)	77, 418, 785, 796, 1127
BslFI	GGGAC	2 cut(s)	142, 467
BslI	CCNNNNNNNGG	5 cut(s)	79, 150, 241, 331, 1126
BsmAI	GTCTC	2 cut(s)	203, 899
BsmFI	GGGAC	2 cut(s)	142, 467
BsmI	GAATGC	1 cut(s)	610
BsnI	GGCC	4 cut(s)	65, 117, 354, 955
Bso31I	GGTCTC	1 cut(s)	203
Bsp1286I	GDGCHC	3 cut(s)	72, 297, 401
Bsp143I	GATC	5 cut(s)	442, 677, 715, 1024, 1132
Bsp19I	CCATGG	1 cut(s)	149
BspANI	GGCC	4 cut(s)	65, 117, 354, 955
BspCNI	CTCAG	2 cut(s)	199, 588
BspFNI	CGCG	4 cut(s)	389, 652, 700, 1077
BspHI	TCATGA	2 cut(s)	511, 706
BspLI	GGNNCC	4 cut(s)	158, 343, 398, 777
BspMAI	CTGCAG	1 cut(s)	13
BspPI	GGATC	4 cut(s)	450, 685, 723, 1127
BspT107I	GGYRCC	1 cut(s)	775
BspTNI	GGTCTC	1 cut(s)	203
BsrBI	CCGCTC	1 cut(s)	307
BssECI	CCNNGG	2 cut(s)	149, 401
BssMI	GATC	5 cut(s)	442, 677, 715, 1024, 1132
BssNI	GRCGYC	2 cut(s)	33, 504
BssT1I	CCWWGG	2 cut(s)	149, 401
Bst2UI	CCWGG	1 cut(s)	62
Bst4CI	ACNGT	2 cut(s)	891, 928
Bst6I	CTCTTC	1 cut(s)	1175
BstACI	GRCGYC	2 cut(s)	33, 504
BstC8I	GCNNGC	1 cut(s)	356
BstDEI	CTNAG	3 cut(s)	207, 596, 957
BstDSI	CCRYGG	1 cut(s)	149
BstENI	CCTNNNNNAGG	1 cut(s)	239
BstF5I	GGATG	4 cut(s)	93, 557, 628, 1192
BstFNI	CGCG	4 cut(s)	389, 652, 700, 1077
BstKTI	GATC	5 cut(s)	445, 680, 718, 1027, 1135
BstMAI	GTCTC	2 cut(s)	203, 899
BstMBI	GATC	5 cut(s)	442, 677, 715, 1024, 1132
BstMCI	CGRYCG	1 cut(s)	118
BstMWI	GCNNNNNNNGC	4 cut(s)	62, 360, 433, 637
BstNI	CCWGG	1 cut(s)	62
BstNSI	RCATGY	1 cut(s)	631
BstSCI	CCNGG	1 cut(s)	60
BstSFI	CTRYAG	2 cut(s)	9, 1101
BstUI	CGCG	4 cut(s)	389, 652, 700, 1077
BstV2I	GAAGAC	1 cut(s)	1155
BstX2I	RGATCY	2 cut(s)	677, 1024
BstYI	RGATCY	2 cut(s)	677, 1024
BstZI	CGGCCG	1 cut(s)	115
BsuI	GTATCC	1 cut(s)	491
BsuRI	GGCC	4 cut(s)	65, 117, 354, 955
BtgI	CCRYGG	1 cut(s)	149
BtgZI	GCGATG	1 cut(s)	370
BtrI	CACGTC	1 cut(s)	112
BtsCI	GGATG	4 cut(s)	93, 557, 628, 1192
BtsIMutI	CAGTG	1 cut(s)	204
Cac8I	GCNNGC	1 cut(s)	356
CciI	TCATGA	2 cut(s)	511, 706
Cfr13I	GGNCC	4 cut(s)	135, 156, 342, 793
CseI	GACGC	5 cut(s)	41, 250, 512, 552, 706
Csp6I	GTAC	1 cut(s)	415
CviAII	CATG	6 cut(s)	150, 310, 512, 628, 707, 1019
CviQI	GTAC	1 cut(s)	415
DdeI	CTNAG	3 cut(s)	207, 596, 957
DpnI	GATC	5 cut(s)	444, 679, 717, 1026, 1134
DpnII	GATC	5 cut(s)	442, 677, 715, 1024, 1132
DraI	TTTAAA	1 cut(s)	279
DriI	GACNNNNNGTC	1 cut(s)	702
EaeI	YGGCCR	2 cut(s)	63, 115
EagI	CGGCCG	1 cut(s)	115
Eam1104I	CTCTTC	1 cut(s)	1175
Eam1105I	GACNNNNNGTC	1 cut(s)	702
EarI	CTCTTC	1 cut(s)	1175
EciI	GGCGGA	1 cut(s)	392
Ecl136II	GAGCTC	2 cut(s)	70, 295
EclXI	CGGCCG	1 cut(s)	115
Eco130I	CCWWGG	2 cut(s)	149, 401
Eco147I	AGGCCT	1 cut(s)	955
Eco24I	GRGCYC	3 cut(s)	72, 297, 401
Eco31I	GGTCTC	1 cut(s)	203
Eco47I	GGWCC	4 cut(s)	135, 156, 342, 793
Eco52I	CGGCCG	1 cut(s)	115
Eco53kI	GAGCTC	2 cut(s)	70, 295
EcoICRI	GAGCTC	2 cut(s)	70, 295
EcoNI	CCTNNNNNAGG	1 cut(s)	239
EcoO109I	RGGNCCY	1 cut(s)	342
EcoRII	CCWGG	1 cut(s)	60
EcoT14I	CCWWGG	2 cut(s)	149, 401
EcoT38I	GRGCYC	3 cut(s)	72, 297, 401
ErhI	CCWWGG	2 cut(s)	149, 401
FaeI	CATG	6 cut(s)	153, 313, 515, 631, 710, 1022
FalI	AAGNNNNNCTT	2 cut(s)	819, 851
FaqI	GGGAC	2 cut(s)	142, 467
FatI	CATG	6 cut(s)	149, 309, 511, 627, 706, 1018
FauI	CCCGC	4 cut(s)	81, 110, 312, 730
FblI	GTMKAC	1 cut(s)	994
Fnu4HI	GCNGC	1 cut(s)	118
FokI	GGATG	4 cut(s)	80, 564, 635, 1199
FriOI	GRGCYC	3 cut(s)	72, 297, 401
Fsp4HI	GCNGC	1 cut(s)	118
FspBI	CTAG	3 cut(s)	480, 1137, 1196
GluI	GCNGC	1 cut(s)	118
GsaI	CCCAGC	2 cut(s)	40, 497
HaeIII	GGCC	4 cut(s)	65, 117, 354, 955
HapII	CCGG	5 cut(s)	77, 418, 785, 796, 1127
HgaI	GACGC	5 cut(s)	41, 250, 512, 552, 706
Hin1I	GRCGYC	2 cut(s)	33, 504
Hin1II	CATG	6 cut(s)	153, 313, 515, 631, 710, 1022
HincII	GTYRAC	1 cut(s)	995
HindII	GTYRAC	1 cut(s)	995
HinfI	GANTC	7 cut(s)	245, 272, 421, 664, 703, 988, 1072
HpaII	CCGG	5 cut(s)	77, 418, 785, 796, 1127
HphI	GGTGA	3 cut(s)	293, 592, 706
Hpy166II	GTNNAC	4 cut(s)	487, 924, 995, 1142
Hpy188I	TCNGA	6 cut(s)	250, 442, 551, 597, 807, 1053
Hpy188III	TCNNGA	3 cut(s)	512, 532, 707
Hpy8I	GTNNAC	4 cut(s)	487, 924, 995, 1142
Hpy99I	CGWCG	8 cut(s)	116, 143, 266, 293, 442, 506, 568, 996
HpyAV	CCTTC	6 cut(s)	67, 206, 751, 821, 945, 1196
HpyCH4III	ACNGT	2 cut(s)	891, 928
HpyCH4IV	ACGT	2 cut(s)	111, 372
HpyCH4V	TGCA	6 cut(s)	11, 348, 363, 369, 685, 840
HpyF10VI	GCNNNNNNNGC	4 cut(s)	62, 360, 433, 637
HpyF3I	CTNAG	3 cut(s)	207, 596, 957
HpySE526I	ACGT	2 cut(s)	111, 372
Hsp92I	GRCGYC	2 cut(s)	33, 504
Hsp92II	CATG	6 cut(s)	153, 313, 515, 631, 710, 1022
Kzo9I	GATC	5 cut(s)	442, 677, 715, 1024, 1132
LmnI	GCTCC	3 cut(s)	75, 176, 396
LweI	GCATC	3 cut(s)	274, 372, 771
MaeI	CTAG	3 cut(s)	480, 1137, 1196
MaeII	ACGT	2 cut(s)	111, 372
MaeIII	GTNAC	3 cut(s)	314, 644, 694
MalI	GATC	5 cut(s)	444, 679, 717, 1026, 1134
MbiI	CCGCTC	1 cut(s)	307
MboI	GATC	5 cut(s)	442, 677, 715, 1024, 1132
MboII	GAAGA	5 cut(s)	26, 869, 1034, 1160, 1192
MflI	RGATCY	2 cut(s)	677, 1024
MhlI	GDGCHC	3 cut(s)	72, 297, 401
MluCI	AATT	5 cut(s)	327, 524, 917, 1065, 1211
MlyI	GAGTC	2 cut(s)	239, 712
MmeI	TCCRAC	2 cut(s)	273, 420
MseI	TTAA	5 cut(s)	278, 408, 900, 966, 1068
MspI	CCGG	5 cut(s)	77, 418, 785, 796, 1127
MspR9I	CCNGG	1 cut(s)	62
Mva1269I	GAATGC	1 cut(s)	610
MvaI	CCWGG	1 cut(s)	62
MvnI	CGCG	4 cut(s)	389, 652, 700, 1077
MwoI	GCNNNNNNNGC	4 cut(s)	62, 360, 433, 637
NcoI	CCATGG	1 cut(s)	149
NdeII	GATC	5 cut(s)	442, 677, 715, 1024, 1132
NlaIII	CATG	6 cut(s)	153, 313, 515, 631, 710, 1022
NlaIV	GGNNCC	4 cut(s)	158, 343, 398, 777
NmeAIII	GCCGAG	1 cut(s)	91
NmuCI	GTSAC	1 cut(s)	694
NspI	RCATGY	1 cut(s)	631
PagI	TCATGA	2 cut(s)	511, 706
PceI	AGGCCT	1 cut(s)	955
PcsI	WCGNNNNNNNCGW	1 cut(s)	288
PctI	GAATGC	1 cut(s)	610
PfeI	GAWTC	5 cut(s)	272, 421, 664, 988, 1072
PflMI	CCANNNNNTGG	1 cut(s)	150
PkrI	GCNGC	1 cut(s)	119
PleI	GAGTC	2 cut(s)	239, 711
PpsI	GAGTC	2 cut(s)	239, 711
PpuMI	RGGWCCY	1 cut(s)	342
PsiI	TTATAA	1 cut(s)	522
Psp124BI	GAGCTC	2 cut(s)	72, 297
Psp5II	RGGWCCY	1 cut(s)	342
Psp6I	CCWGG	1 cut(s)	60
PspFI	CCCAGC	2 cut(s)	36, 493
PspGI	CCWGG	1 cut(s)	60
PspN4I	GGNNCC	4 cut(s)	158, 343, 398, 777
PspPI	GGNCC	4 cut(s)	135, 156, 342, 793
PspPPI	RGGWCCY	1 cut(s)	342
PstI	CTGCAG	1 cut(s)	13
PsuI	RGATCY	2 cut(s)	677, 1024
RsaI	GTAC	1 cut(s)	416
RsaNI	GTAC	1 cut(s)	415
SacI	GAGCTC	2 cut(s)	72, 297
SalI	GTCGAC	1 cut(s)	993
SaqAI	TTAA	5 cut(s)	278, 408, 900, 966, 1068
SatI	GCNGC	1 cut(s)	118
Sau3AI	GATC	5 cut(s)	442, 677, 715, 1024, 1132
Sau96I	GGNCC	4 cut(s)	135, 156, 342, 793
SchI	GAGTC	2 cut(s)	239, 712
ScrFI	CCNGG	1 cut(s)	62
SduI	GDGCHC	3 cut(s)	72, 297, 401
SfaNI	GCATC	3 cut(s)	274, 372, 771
SfcI	CTRYAG	2 cut(s)	9, 1101
SinI	GGWCC	4 cut(s)	135, 156, 342, 793
SmlI	CTYRAG	1 cut(s)	939
SmoI	CTYRAG	1 cut(s)	939
Sse9I	AATT	5 cut(s)	327, 524, 917, 1065, 1211
SseBI	AGGCCT	1 cut(s)	955
SspMI	CTAG	3 cut(s)	480, 1137, 1196
SstI	GAGCTC	2 cut(s)	72, 297
StuI	AGGCCT	1 cut(s)	955
StyD4I	CCNGG	1 cut(s)	60
StyI	CCWWGG	2 cut(s)	149, 401
TaaI	ACNGT	2 cut(s)	891, 928
TaiI	ACGT	2 cut(s)	114, 375
TaqI	TCGA	6 cut(s)	165, 264, 270, 291, 445, 994
TasI	AATT	5 cut(s)	327, 524, 917, 1065, 1211
TauI	GCSGC	1 cut(s)	120
TfiI	GAWTC	5 cut(s)	272, 421, 664, 988, 1072
Tru1I	TTAA	5 cut(s)	278, 408, 900, 966, 1068
Tru9I	TTAA	5 cut(s)	278, 408, 900, 966, 1068
TscAI	CASTG	1 cut(s)	211
TseFI	GTSAC	1 cut(s)	694
Tsp45I	GTSAC	1 cut(s)	694
TspDTI	ATGAA	8 cut(s)	17, 33, 188, 500, 617, 723, 870, 1035
TspGWI	ACGGA	2 cut(s)	127, 227
TspRI	CASTG	1 cut(s)	211
Van91I	CCANNNNNTGG	1 cut(s)	150
VpaK11BI	GGWCC	4 cut(s)	135, 156, 342, 793
XagI	CCTNNNNNAGG	1 cut(s)	239
XceI	RCATGY	1 cut(s)	631
XmiI	GTMKAC	1 cut(s)	994
XspI	CTAG	3 cut(s)	480, 1137, 1196

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.