Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007177

Physical Location & Seq

Genomic Coordinates Reverse (-)

7901216 .. 7904042

Gene Structure 2827 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G13590.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1080 bp

ATGAAGCTCACAAGCTTGAGCAAGAATGCTAATTCCACAGCAACAGCAGTAACTGTATCTTCAATACAGAAACTCCCGTTTCTGTCTCTGTCTGAAACTTTGCCTTGTCCGAAGAGTTCGAGAAAACCCACGTTTCTTCCTTTAAGATGTAGACGGAGACCAAAGTTGGATTTGCTCTGGGGAAAATTTAGAGTTCGTGCATCAGATGCTGGTGTTGGATCTGGGAGTTATAGTGGTGGAGAAGAGGATGGATCTCAGAGTAGTTCTCTTGATCAGTCTCCTGCCACTTCATCAGAAAGCTTAAAACCTCGAGGGCCATTTCCTTATTCTTTGTCAATAGCGCTTGTACTACTGAGTTGTGGTTTGGTATTTTCTCTTATCACTTTTGTGAAAGGAGGACCATCTTCAGTTTTAGCAGCAGTAGCAAAGTCAGGCTTCACAGCAGCCTTCTCACTCATATTTGTTTCTGAGATTGGAGACAAGACATTTTTCATTGCTGCTTTGTTGGCCATGCAGTATGAGAAAACACTGGTCCTTTTAGGTTCAATGGGGGCTTTATCTTTGATGACTATCTTATCAGTTGTTATTGGGAAGATATTTCAATCCGTGCCTGCTCAGTTCCAAACGACACTACCGATAGGAGAATATGCTGCAATTGCGCTTCTCATGTTTTTTGGATTGAAATCCATTAAAGATGCATGGGATCTTCCACCAGTGGAAGCCAAGAATGGTGAGGAAACTGGTATAGAACTTGGTGAATACTCCGAAGCTGAGGAACTCGTGAAAGAAAAGGCGTCCAAAAAGCTCACAAACCCACTTGAAATCCTCTGGAAGTCATTCAGCCTCGTGTTCTTTGCGGAATGGGGAGATCGATCAATGCTTGCTACTGTTGCGCTTGGTGCTGCACAGTCTCCATTGGGAGTTGCGAGCGGAGCTATTGCTGGACACTTAGTAGCAACAGTGCTTGCAATCATGGGCGGCGCGTTCCTTGCCAACTATATCTCTGAGAAACTGGTGGGCTATGTTGGGGGAGCTCTCTTCTTAGTTTTTGCTGCAGCCACATTCTTTGGAGTGTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009528 GO:0009536 GO:0009706 GO:0009941 GO:0016020 GO:0019866 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0042170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UPF0016

Protein Analysis

359

Amino Acids

37.93

Weight (kDa)

8.82

Isoelectric Point (pI)

39.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GDT1	PF01169	148 - 226	9e-17	Divalent cation/proton antiporter GDT1
GDT1	PF01169	277 - 351	1.7e-22	Divalent cation/proton antiporter GDT1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007177)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13590 AT4G13590
fragaria_vesca	FvH4_4g05550 FvH4_4g05550 FvH4_4g05550 FvH4_4g05550
malus_domestica	MD13G1229100.v1.1 MD13G1229200.v1.1 MD13G1229400.v1.1 MD16G1235000.v1.1 MD16G1235100.v1.1
prunus_persica	Prupe.1G057500_v2.0.a1
pyrus_communis	pycom13g20220
rosa_chinensis	RchiOBHm_Chr4g0396661
rosa_laevigata	RLG00000009512
rosa_multiflora	Rmu_sc0006586.1_g000015 Rmu_sc0010969.1_g000009
rosa_roxburghii	Rroxscaffold_5G00341520
rosa_rugosa	Rorug03G0348200 Rorug03G0348200
rosa_samantha	Rh4AG071100 Rh4BG069100 Rh4CG076900 Rh4DG066300
rosa_wichuraiana	Rw4G005680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	309
AccBSI	CCGCTC	1 cut(s)	930
AccI	GTMKAC	1 cut(s)	151
AccII	CGCG	1 cut(s)	983
AciI	CCGC	3 cut(s)	857, 930, 978
AclWI	GGATC	3 cut(s)	226, 259, 711
AcoI	YGGCCR	1 cut(s)	507
AcsI	RAATTY	1 cut(s)	185
AcuI	CTGAAG	1 cut(s)	390
AcyI	GRCGYC	1 cut(s)	794
AfaI	GTAC	1 cut(s)	348
AfeI	AGCGCT	1 cut(s)	342
AgsI	TTSAA	5 cut(s)	63, 546, 602, 682, 821
AleI	CACNNNNGTG	1 cut(s)	386
AluBI	AGCT	7 cut(s)	7, 15, 300, 770, 805, 935, 1034
AluI	AGCT	7 cut(s)	7, 15, 300, 770, 805, 935, 1034
Alw21I	GWGCWC	1 cut(s)	1036
Alw26I	GTCTC	5 cut(s)	90, 151, 282, 471, 915
AlwI	GGATC	3 cut(s)	226, 259, 711
AlwNI	CAGNNNCTG	2 cut(s)	53, 209
Ama87I	CYCGRG	1 cut(s)	309
Aor51HI	AGCGCT	1 cut(s)	342
AoxI	GGCC	2 cut(s)	314, 507
ApeKI	GCWGC	7 cut(s)	416, 443, 497, 650, 902, 1052, 1055
ApoI	RAATTY	1 cut(s)	185
Asp700I	GAANNNNTTC	1 cut(s)	836
AspLEI	GCGC	4 cut(s)	343, 661, 895, 983
AspS9I	GGNCC	3 cut(s)	314, 398, 532
AsuHPI	GGTGA	2 cut(s)	743, 767
AvaI	CYCGRG	1 cut(s)	309
AvaII	GGWCC	2 cut(s)	398, 532
BalI	TGGCCA	1 cut(s)	509
BanII	GRGCYC	1 cut(s)	1036
BauI	CACGAG	2 cut(s)	779, 845
Bbv12I	GWGCWC	1 cut(s)	1036
BbvCI	CCTCAGC	1 cut(s)	771
BbvI	GCAGC	7 cut(s)	428, 455, 484, 637, 889, 1039, 1067
BccI	CCATC	2 cut(s)	242, 409
BclI	TGATCA	1 cut(s)	271
BcoDI	GTCTC	5 cut(s)	90, 151, 282, 471, 915
BfmI	CTRYAG	1 cut(s)	1053
BfoI	RGCGCY	1 cut(s)	344
BisI	GCNGC	8 cut(s)	417, 444, 498, 651, 903, 979, 1053, 1056
BlsI	GCNGC	8 cut(s)	418, 445, 499, 652, 904, 980, 1054, 1057
Bme18I	GGWCC	2 cut(s)	398, 532
BmeT110I	CYCGRG	1 cut(s)	309
BmgT120I	GGNCC	3 cut(s)	314, 398, 532
BmsI	GCATC	3 cut(s)	196, 209, 685
BplI	GAGNNNNNCTC	2 cut(s)	250, 282
Bpu10I	CCTNAGC	1 cut(s)	771
BpuEI	CTTGAG	1 cut(s)	37
Bsa29I	ATCGAT	1 cut(s)	871
BsaBI	GATNNNNATC	2 cut(s)	569, 682
BsaHI	GRCGYC	1 cut(s)	794
BsaI	GGTCTC	1 cut(s)	151
BsaXI	ACNNNNNCTCC	4 cut(s)	57, 87, 217, 247
Bse1I	ACTGG	4 cut(s)	534, 713, 745, 1017
Bse3DI	GCAATG	1 cut(s)	492
Bse8I	GATNNNNATC	2 cut(s)	569, 682
BseCI	ATCGAT	1 cut(s)	871
BseGI	GGATG	1 cut(s)	253
BseJI	GATNNNNATC	2 cut(s)	569, 682
BseMI	GCAATG	1 cut(s)	492
BseMII	CTCAG	6 cut(s)	269, 344, 459, 629, 762, 996
BseNI	ACTGG	4 cut(s)	534, 713, 745, 1017
BseXI	GCAGC	7 cut(s)	428, 455, 484, 637, 889, 1039, 1067
BsgI	GTGCAG	1 cut(s)	888
Bsh1236I	CGCG	1 cut(s)	983
BshFI	GGCC	2 cut(s)	316, 509
BshVI	ATCGAT	1 cut(s)	871
BsiHKAI	GWGCWC	1 cut(s)	1036
BsiHKCI	CYCGRG	1 cut(s)	309
BsmAI	GTCTC	5 cut(s)	90, 151, 282, 471, 915
BsmI	GAATGC	1 cut(s)	31
BsnI	GGCC	2 cut(s)	316, 509
Bso31I	GGTCTC	1 cut(s)	151
BsoBI	CYCGRG	1 cut(s)	309
Bsp1286I	GDGCHC	1 cut(s)	1036
Bsp143I	GATC	6 cut(s)	218, 251, 271, 703, 868, 872
BspACI	CCGC	3 cut(s)	857, 930, 978
BspANI	GGCC	2 cut(s)	316, 509
BspCNI	CTCAG	6 cut(s)	268, 345, 460, 628, 763, 997
BspDI	ATCGAT	1 cut(s)	871
BspFNI	CGCG	1 cut(s)	983
BspMAI	CTGCAG	1 cut(s)	1057
BspPI	GGATC	3 cut(s)	226, 259, 711
BspTNI	GGTCTC	1 cut(s)	151
BsrBI	CCGCTC	1 cut(s)	930
BsrDI	GCAATG	1 cut(s)	492
BsrI	ACTGG	4 cut(s)	534, 713, 745, 1017
BssMI	GATC	6 cut(s)	218, 251, 271, 703, 868, 872
BssNI	GRCGYC	1 cut(s)	794
BssSI	CACGAG	2 cut(s)	779, 845
Bst2BI	CACGAG	2 cut(s)	779, 845
Bst4CI	ACNGT	4 cut(s)	55, 889, 909, 961
Bst6I	CTCTTC	3 cut(s)	107, 237, 1043
BstACI	GRCGYC	1 cut(s)	794
BstAPI	GCANNNNNTGC	1 cut(s)	206
BstC8I	GCNNGC	4 cut(s)	612, 882, 928, 966
BstDEI	CTNAG	8 cut(s)	255, 353, 468, 615, 771, 949, 1005, 1042
BstF5I	GGATG	1 cut(s)	253
BstFNI	CGCG	1 cut(s)	983
BstH2I	RGCGCY	1 cut(s)	344
BstHHI	GCGC	4 cut(s)	343, 661, 895, 983
BstKTI	GATC	6 cut(s)	221, 254, 274, 706, 871, 875
BstMAI	GTCTC	5 cut(s)	90, 151, 282, 471, 915
BstMBI	GATC	6 cut(s)	218, 251, 271, 703, 868, 872
BstMWI	GCNNNNNNNGC	8 cut(s)	206, 422, 506, 656, 890, 899, 932, 989
BstSFI	CTRYAG	1 cut(s)	1053
BstUI	CGCG	1 cut(s)	983
BstV1I	GCAGC	7 cut(s)	428, 455, 484, 637, 889, 1039, 1067
BstX2I	RGATCY	3 cut(s)	218, 251, 703
BstYI	RGATCY	3 cut(s)	218, 251, 703
Bsu15I	ATCGAT	1 cut(s)	871
BsuRI	GGCC	2 cut(s)	316, 509
BsuTUI	ATCGAT	1 cut(s)	871
BtsCI	GGATG	1 cut(s)	253
BtsIMutI	CAGTG	3 cut(s)	527, 720, 966
Cac8I	GCNNGC	4 cut(s)	612, 882, 928, 966
CaiI	CAGNNNCTG	2 cut(s)	53, 209
CfoI	GCGC	4 cut(s)	343, 661, 895, 983
Cfr13I	GGNCC	3 cut(s)	314, 398, 532
ClaI	ATCGAT	1 cut(s)	871
CseI	GACGC	1 cut(s)	783
Csp6I	GTAC	1 cut(s)	347
CspCI	CAANNNNNGTGG	1 cut(s)	1048
CviAII	CATG	4 cut(s)	511, 667, 699, 973
CviQI	GTAC	1 cut(s)	347
DdeI	CTNAG	8 cut(s)	255, 353, 468, 615, 771, 949, 1005, 1042
DpnI	GATC	6 cut(s)	220, 253, 273, 705, 870, 874
DpnII	GATC	6 cut(s)	218, 251, 271, 703, 868, 872
EaeI	YGGCCR	1 cut(s)	507
Eam1104I	CTCTTC	3 cut(s)	107, 237, 1043
EarI	CTCTTC	3 cut(s)	107, 237, 1043
Ecl136II	GAGCTC	1 cut(s)	1034
Eco24I	GRGCYC	1 cut(s)	1036
Eco31I	GGTCTC	1 cut(s)	151
Eco47I	GGWCC	2 cut(s)	398, 532
Eco47III	AGCGCT	1 cut(s)	342
Eco53kI	GAGCTC	1 cut(s)	1034
Eco57I	CTGAAG	1 cut(s)	390
Eco88I	CYCGRG	1 cut(s)	309
EcoICRI	GAGCTC	1 cut(s)	1034
EcoT22I	ATGCAT	1 cut(s)	700
EcoT38I	GRGCYC	1 cut(s)	1036
FaeI	CATG	4 cut(s)	514, 670, 702, 976
FalI	AAGNNNNNCTT	2 cut(s)	419, 451
FatI	CATG	4 cut(s)	510, 666, 698, 972
FbaI	TGATCA	1 cut(s)	271
FblI	GTMKAC	1 cut(s)	151
Fnu4HI	GCNGC	8 cut(s)	417, 444, 498, 651, 903, 979, 1053, 1056
FokI	GGATG	1 cut(s)	260
FriOI	GRGCYC	1 cut(s)	1036
Fsp4HI	GCNGC	8 cut(s)	417, 444, 498, 651, 903, 979, 1053, 1056
GlaI	GCGC	4 cut(s)	342, 660, 894, 982
GluI	GCNGC	8 cut(s)	417, 444, 498, 651, 903, 979, 1053, 1056
HaeII	RGCGCY	1 cut(s)	344
HaeIII	GGCC	2 cut(s)	316, 509
HgaI	GACGC	1 cut(s)	783
HhaI	GCGC	4 cut(s)	343, 661, 895, 983
Hin1I	GRCGYC	1 cut(s)	794
Hin1II	CATG	4 cut(s)	514, 670, 702, 976
Hin6I	GCGC	4 cut(s)	341, 659, 893, 981
HinP1I	GCGC	4 cut(s)	341, 659, 893, 981
HindIII	AAGCTT	2 cut(s)	13, 298
HphI	GGTGA	2 cut(s)	743, 767
Hpy166II	GTNNAC	1 cut(s)	152
Hpy188I	TCNGA	9 cut(s)	94, 111, 205, 258, 295, 469, 766, 1006, 1079
Hpy188III	TCNNGA	4 cut(s)	120, 269, 781, 829
Hpy8I	GTNNAC	1 cut(s)	152
HpyAV	CCTTC	1 cut(s)	457
HpyCH4III	ACNGT	4 cut(s)	55, 889, 909, 961
HpyCH4IV	ACGT	1 cut(s)	131
HpyCH4V	TGCA	7 cut(s)	200, 514, 653, 698, 905, 968, 1055
HpyF10VI	GCNNNNNNNGC	8 cut(s)	206, 422, 506, 656, 890, 899, 932, 989
HpyF3I	CTNAG	8 cut(s)	255, 353, 468, 615, 771, 949, 1005, 1042
HpySE526I	ACGT	1 cut(s)	131
Hsp92I	GRCGYC	1 cut(s)	794
Hsp92II	CATG	4 cut(s)	514, 670, 702, 976
HspAI	GCGC	4 cut(s)	341, 659, 893, 981
Ksp22I	TGATCA	1 cut(s)	271
Kzo9I	GATC	6 cut(s)	218, 251, 271, 703, 868, 872
LmnI	GCTCC	2 cut(s)	932, 1031
Lsp1109I	GCAGC	7 cut(s)	428, 455, 484, 637, 889, 1039, 1067
LweI	GCATC	3 cut(s)	196, 209, 685
MaeII	ACGT	1 cut(s)	131
MaeIII	GTNAC	1 cut(s)	49
MalI	GATC	6 cut(s)	220, 253, 273, 705, 870, 874
MbiI	CCGCTC	1 cut(s)	930
MboI	GATC	6 cut(s)	218, 251, 271, 703, 868, 872
MboII	GAAGA	8 cut(s)	51, 124, 128, 254, 396, 604, 698, 1030
MfeI	CAATTG	1 cut(s)	654
MflI	RGATCY	3 cut(s)	218, 251, 703
MhlI	GDGCHC	1 cut(s)	1036
MlsI	TGGCCA	1 cut(s)	509
MluCI	AATT	3 cut(s)	31, 185, 654
MluNI	TGGCCA	1 cut(s)	509
MmeI	TCCRAC	2 cut(s)	147, 196
MnlI	CCTC	8 cut(s)	238, 305, 318, 389, 727, 766, 836, 854
Mox20I	TGGCCA	1 cut(s)	509
Mph1103I	ATGCAT	1 cut(s)	700
MroXI	GAANNNNTTC	1 cut(s)	836
MscI	TGGCCA	1 cut(s)	509
MseI	TTAA	3 cut(s)	143, 302, 690
MslI	CAYNNNNRTG	1 cut(s)	386
Msp20I	TGGCCA	1 cut(s)	509
MunI	CAATTG	1 cut(s)	654
Mva1269I	GAATGC	1 cut(s)	31
MvnI	CGCG	1 cut(s)	983
MwoI	GCNNNNNNNGC	8 cut(s)	206, 422, 506, 656, 890, 899, 932, 989
NdeII	GATC	6 cut(s)	218, 251, 271, 703, 868, 872
NlaIII	CATG	4 cut(s)	514, 670, 702, 976
NsiI	ATGCAT	1 cut(s)	700
OliI	CACNNNNGTG	1 cut(s)	386
PaeR7I	CTCGAG	1 cut(s)	309
PcsI	WCGNNNNNNNCGW	1 cut(s)	632
PctI	GAATGC	1 cut(s)	31
PdmI	GAANNNNTTC	1 cut(s)	836
PkrI	GCNGC	8 cut(s)	418, 445, 499, 652, 904, 980, 1054, 1057
Psp124BI	GAGCTC	1 cut(s)	1036
PspPI	GGNCC	3 cut(s)	314, 398, 532
PspXI	VCTCGAGB	1 cut(s)	309
PstI	CTGCAG	1 cut(s)	1057
PstNI	CAGNNNCTG	2 cut(s)	53, 209
PsuI	RGATCY	3 cut(s)	218, 251, 703
RsaI	GTAC	1 cut(s)	348
RsaNI	GTAC	1 cut(s)	347
RseI	CAYNNNNRTG	1 cut(s)	386
SacI	GAGCTC	1 cut(s)	1036
SaqAI	TTAA	3 cut(s)	143, 302, 690
SatI	GCNGC	8 cut(s)	417, 444, 498, 651, 903, 979, 1053, 1056
Sau3AI	GATC	6 cut(s)	218, 251, 271, 703, 868, 872
Sau96I	GGNCC	3 cut(s)	314, 398, 532
SduI	GDGCHC	1 cut(s)	1036
SfaNI	GCATC	3 cut(s)	196, 209, 685
SfcI	CTRYAG	1 cut(s)	1053
Sfr274I	CTCGAG	1 cut(s)	309
SinI	GGWCC	2 cut(s)	398, 532
SlaI	CTCGAG	1 cut(s)	309
SmiMI	CAYNNNNRTG	1 cut(s)	386
SmlI	CTYRAG	2 cut(s)	16, 309
SmoI	CTYRAG	2 cut(s)	16, 309
Sse9I	AATT	3 cut(s)	31, 185, 654
SsiI	CCGC	3 cut(s)	857, 930, 978
SstI	GAGCTC	1 cut(s)	1036
TaaI	ACNGT	4 cut(s)	55, 889, 909, 961
TaiI	ACGT	1 cut(s)	134
TaqI	TCGA	3 cut(s)	119, 310, 871
TasI	AATT	3 cut(s)	31, 185, 654
TatI	WGTACW	1 cut(s)	346
TauI	GCSGC	1 cut(s)	981
Tru1I	TTAA	3 cut(s)	143, 302, 690
Tru9I	TTAA	3 cut(s)	143, 302, 690
TscAI	CASTG	3 cut(s)	534, 720, 966
TseI	GCWGC	7 cut(s)	416, 443, 497, 650, 902, 1052, 1055
TspDTI	ATGAA	3 cut(s)	17, 279, 481
TspGWI	ACGGA	2 cut(s)	169, 595
TspRI	CASTG	3 cut(s)	534, 720, 966
VpaK11BI	GGWCC	2 cut(s)	398, 532
XapI	RAATTY	1 cut(s)	185
XhoI	CTCGAG	1 cut(s)	309
XmiI	GTMKAC	1 cut(s)	151
XmnI	GAANNNNTTC	1 cut(s)	836
Zsp2I	ATGCAT	1 cut(s)	700

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.