Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0007177

Physical Location & Seq

Genomic Coordinates Reverse (-)

4829011 .. 4834163

Gene Structure 5153 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g05550.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1056 bp

ATGGAGGGGTTGGTGCTTGTTCATACACCATTGATTCCCAGAAAGAAGCTTCCTTTGTTGGCTTTGGTGGATTCTCTACCATCTTGTACCACTCTTTCTAAAAAGCCCATCACACCCTCAATAAGAAACAGAGAGTTATCACGATTGGTGGGCAGCAAAGTTCGAGTCCAAGCATCTAATGTTAGTATTGGATCTGGAGGCTATGAAGGCGGGGAGGAAAATAAGAACCGGAAAATCATTTCCAGTGATGCAAACAACGACAATTCATCTGAAGTTGAGAAGCCTCCAATTCAAATCCCTTATCCTCTTTCTGTAGCTCTTGTTCTACTTGGGTGTGGGCTACTGTTTTCTTTGATTGCCTTTGTGAGAGGAGGACCTTCAACAATTTTAGCAGCAATTGCAAAAACAGGCTTCACAGCTGCATTCTCTTTAATTTTTGTTTCAGAAATTGGCGACAAGACATTCTTCATAGCCGCACTCTTGGCCATGCAATATGAGAAAGGACTGGTTCTATTGGGGTCAATCAGTGCTCTTGCCCTTATGACAGTTCTGTCTGTCATTATTGGGCGTATATTTCATTCGGTGCCTGCTCAATTTCAGACAACCTTGCCAATTGGAGAATATGCTGCCGTAACTCTTTTACTATTCTTCGGTCTCAAGTCAATAAAAGATGCATGGGACCTTCCATCAAATGATGTTGAGGGTGGTGATAAAAGCAGCCCTGAGCTTGATGAATATACTGAAGCTGAGGAGCTTGTAAAACAGAAGGCGTCAAGGCGGCTCACCAATCCACTTGAAATTATCTGGAAATCGTTCAGCCTTGTATTTGTTGCTGAATGGGGAGATCGCTCAATGCTTGCGACAATCGCTCTGGGTGCTGCACAGTCACCATGGGGTGTGGCCGGTGGAGCAATTGCTGGACATGCACTTGCTACTTTCATTGCTGTTCTAGGAGGTGCATTTCTTGCCAAATACATTTCCGAGAAACTGGTTGGCTACATTGGTGGTGCTTTGTTTCTAGTTTTTGCAGTAGCTACATTTTTTGGAGTATTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009528 GO:0009536 GO:0009706 GO:0009941 GO:0016020 GO:0019866 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0042170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UPF0016

Protein Analysis

352

Amino Acids

37.33

Weight (kDa)

7.71

Isoelectric Point (pI)

30.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GDT1	PF01169	140 - 218	3.2e-17	Divalent cation/proton antiporter GDT1
GDT1	PF01169	269 - 330	1.4e-19	Divalent cation/proton antiporter GDT1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007177)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13590 AT4G13590
fragaria_vesca	FvH4_4g05550 FvH4_4g05550 FvH4_4g05550 FvH4_4g05550
malus_domestica	MD13G1229100.v1.1 MD13G1229200.v1.1 MD13G1229400.v1.1 MD16G1235000.v1.1 MD16G1235100.v1.1
prunus_persica	Prupe.1G057500_v2.0.a1
pyrus_communis	pycom13g20220
rosa_chinensis	RchiOBHm_Chr4g0396661
rosa_laevigata	RLG00000009512
rosa_multiflora	Rmu_sc0006586.1_g000015 Rmu_sc0010969.1_g000009
rosa_roxburghii	Rroxscaffold_5G00341520
rosa_rugosa	Rorug03G0348200 Rorug03G0348200
rosa_samantha	Rh4AG071100 Rh4BG069100 Rh4CG076900 Rh4DG066300
rosa_wichuraiana	Rw4G005680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	550
AccB1I	GGYRCC	1 cut(s)	583
AciI	CCGC	3 cut(s)	210, 474, 778
AclWI	GGATC	1 cut(s)	199
AcoI	YGGCCR	2 cut(s)	483, 900
AcuI	CTGAAG	2 cut(s)	291, 762
AcyI	GRCGYC	1 cut(s)	770
AfaI	GTAC	1 cut(s)	88
AgsI	TTSAA	3 cut(s)	293, 381, 797
AluBI	AGCT	7 cut(s)	49, 317, 419, 727, 746, 754, 1034
AluI	AGCT	7 cut(s)	49, 317, 419, 727, 746, 754, 1034
Alw21I	GWGCWC	1 cut(s)	532
Alw26I	GTCTC	1 cut(s)	659
AlwI	GGATC	1 cut(s)	199
AoxI	GGCC	2 cut(s)	483, 900
ApeKI	GCWGC	6 cut(s)	153, 392, 419, 626, 717, 878
ArsI	GACNNNNNNTTYG	2 cut(s)	150, 182
Asp700I	GAANNNNTTC	1 cut(s)	812
AspS9I	GGNCC	2 cut(s)	374, 679
AsuHPI	GGTGA	3 cut(s)	719, 775, 879
AvaII	GGWCC	2 cut(s)	374, 679
BalI	TGGCCA	1 cut(s)	485
BanI	GGYRCC	1 cut(s)	583
Bbv12I	GWGCWC	1 cut(s)	532
BbvCI	CCTCAGC	1 cut(s)	747
BbvI	GCAGC	6 cut(s)	165, 404, 406, 613, 729, 865
BccI	CCATC	3 cut(s)	88, 116, 694
BceAI	ACGGC	1 cut(s)	614
BcoDI	GTCTC	1 cut(s)	659
BfaI	CTAG	2 cut(s)	950, 1019
BfmI	CTRYAG	1 cut(s)	312
BisI	GCNGC	8 cut(s)	154, 393, 420, 474, 627, 718, 779, 879
BlsI	GCNGC	8 cut(s)	155, 394, 421, 475, 628, 719, 780, 880
Bme18I	GGWCC	2 cut(s)	374, 679
BmgT120I	GGNCC	2 cut(s)	374, 679
BmiI	GGNNCC	2 cut(s)	585, 680
BmsI	GCATC	3 cut(s)	182, 238, 661
BpmI	CTGGAG	1 cut(s)	216
Bpu10I	CCTNAGC	2 cut(s)	723, 747
BpuEI	CTTGAG	1 cut(s)	641
BsaHI	GRCGYC	1 cut(s)	770
BsaI	GGTCTC	1 cut(s)	659
BsaJI	CCNNGG	1 cut(s)	890
BsaWI	WCCGGW	1 cut(s)	228
Bse118I	RCCGGY	1 cut(s)	902
Bse1I	ACTGG	3 cut(s)	243, 510, 993
Bse3DI	GCAATG	1 cut(s)	939
BseDI	CCNNGG	1 cut(s)	890
BseMI	GCAATG	1 cut(s)	939
BseMII	CTCAG	2 cut(s)	714, 738
BseNI	ACTGG	3 cut(s)	243, 510, 993
BseRI	GAGGAG	2 cut(s)	384, 764
BseXI	GCAGC	6 cut(s)	165, 404, 406, 613, 729, 865
BsgI	GTGCAG	1 cut(s)	864
BshFI	GGCC	2 cut(s)	485, 902
BshNI	GGYRCC	1 cut(s)	583
BsiHKAI	GWGCWC	1 cut(s)	532
BsiSI	CCGG	2 cut(s)	229, 903
BslFI	GGGAC	1 cut(s)	692
BsmAI	GTCTC	1 cut(s)	659
BsmFI	GGGAC	1 cut(s)	692
BsmI	GAATGC	1 cut(s)	422
BsnI	GGCC	2 cut(s)	485, 902
Bso31I	GGTCTC	1 cut(s)	659
Bsp1286I	GDGCHC	1 cut(s)	532
Bsp143I	GATC	2 cut(s)	191, 844
Bsp19I	CCATGG	1 cut(s)	890
BspACI	CCGC	3 cut(s)	210, 474, 778
BspANI	GGCC	2 cut(s)	485, 902
BspCNI	CTCAG	2 cut(s)	715, 739
BspLI	GGNNCC	2 cut(s)	585, 680
BspPI	GGATC	1 cut(s)	199
BspT107I	GGYRCC	1 cut(s)	583
BspTNI	GGTCTC	1 cut(s)	659
BsrDI	GCAATG	1 cut(s)	939
BsrFI	RCCGGY	1 cut(s)	902
BsrI	ACTGG	3 cut(s)	243, 510, 993
BssAI	RCCGGY	1 cut(s)	902
BssECI	CCNNGG	1 cut(s)	890
BssMI	GATC	2 cut(s)	191, 844
BssNI	GRCGYC	1 cut(s)	770
BssT1I	CCWWGG	1 cut(s)	890
Bst4CI	ACNGT	3 cut(s)	345, 547, 885
BstACI	GRCGYC	1 cut(s)	770
BstAPI	GCANNNNNTGC	2 cut(s)	398, 965
BstC8I	GCNNGC	2 cut(s)	588, 858
BstDEI	CTNAG	2 cut(s)	723, 747
BstDSI	CCRYGG	1 cut(s)	890
BstKTI	GATC	2 cut(s)	194, 847
BstMAI	GTCTC	1 cut(s)	659
BstMBI	GATC	2 cut(s)	191, 844
BstMWI	GCNNNNNNNGC	8 cut(s)	207, 398, 482, 866, 875, 908, 923, 965
BstNSI	RCATGY	1 cut(s)	926
BstSFI	CTRYAG	1 cut(s)	312
BstV1I	GCAGC	6 cut(s)	165, 404, 406, 613, 729, 865
BstX2I	RGATCY	1 cut(s)	191
BstYI	RGATCY	1 cut(s)	191
BsuRI	GGCC	2 cut(s)	485, 902
BtgI	CCRYGG	1 cut(s)	890
BtsIMutI	CAGTG	2 cut(s)	250, 532
Cac8I	GCNNGC	2 cut(s)	588, 858
Cfr10I	RCCGGY	1 cut(s)	902
Cfr13I	GGNCC	2 cut(s)	374, 679
CseI	GACGC	1 cut(s)	759
Csp6I	GTAC	1 cut(s)	87
CviAII	CATG	4 cut(s)	487, 675, 891, 923
CviQI	GTAC	1 cut(s)	87
DdeI	CTNAG	2 cut(s)	723, 747
DpnI	GATC	2 cut(s)	193, 846
DpnII	GATC	2 cut(s)	191, 844
DrdI	GACNNNNNNGTC	1 cut(s)	550
DseDI	GACNNNNNNGTC	1 cut(s)	550
EaeI	YGGCCR	2 cut(s)	483, 900
Eco130I	CCWWGG	1 cut(s)	890
Eco31I	GGTCTC	1 cut(s)	659
Eco47I	GGWCC	2 cut(s)	374, 679
Eco57I	CTGAAG	2 cut(s)	291, 762
EcoO109I	RGGNCCY	2 cut(s)	374, 679
EcoT14I	CCWWGG	1 cut(s)	890
EcoT22I	ATGCAT	1 cut(s)	676
ErhI	CCWWGG	1 cut(s)	890
FaeI	CATG	4 cut(s)	490, 678, 894, 926
FalI	AAGNNNNNCTT	2 cut(s)	449, 481
FaqI	GGGAC	1 cut(s)	692
FatI	CATG	4 cut(s)	486, 674, 890, 922
FauI	CCCGC	1 cut(s)	203
Fnu4HI	GCNGC	8 cut(s)	154, 393, 420, 474, 627, 718, 779, 879
Fsp4HI	GCNGC	8 cut(s)	154, 393, 420, 474, 627, 718, 779, 879
FspBI	CTAG	2 cut(s)	950, 1019
GluI	GCNGC	8 cut(s)	154, 393, 420, 474, 627, 718, 779, 879
GsuI	CTGGAG	1 cut(s)	216
HaeIII	GGCC	2 cut(s)	485, 902
HapII	CCGG	2 cut(s)	229, 903
HgaI	GACGC	1 cut(s)	759
Hin1I	GRCGYC	1 cut(s)	770
Hin1II	CATG	4 cut(s)	490, 678, 894, 926
HindIII	AAGCTT	1 cut(s)	47
HinfI	GANTC	3 cut(s)	34, 71, 165
HpaII	CCGG	2 cut(s)	229, 903
HphI	GGTGA	3 cut(s)	719, 775, 879
Hpy188I	TCNGA	5 cut(s)	271, 445, 600, 982, 1055
Hpy188III	TCNNGA	3 cut(s)	141, 195, 805
HpyAV	CCTTC	4 cut(s)	200, 387, 692, 760
HpyCH4III	ACNGT	3 cut(s)	345, 547, 885
HpyCH4V	TGCA	9 cut(s)	251, 401, 422, 490, 674, 881, 926, 959, 1028
HpyF10VI	GCNNNNNNNGC	8 cut(s)	207, 398, 482, 866, 875, 908, 923, 965
HpyF3I	CTNAG	2 cut(s)	723, 747
Hsp92I	GRCGYC	1 cut(s)	770
Hsp92II	CATG	4 cut(s)	490, 678, 894, 926
Kzo9I	GATC	2 cut(s)	191, 844
LmnI	GCTCC	2 cut(s)	751, 908
Lsp1109I	GCAGC	6 cut(s)	165, 404, 406, 613, 729, 865
LweI	GCATC	3 cut(s)	182, 238, 661
MaeI	CTAG	2 cut(s)	950, 1019
MaeIII	GTNAC	2 cut(s)	631, 885
MalI	GATC	2 cut(s)	193, 846
MboI	GATC	2 cut(s)	191, 844
MboII	GAAGA	2 cut(s)	457, 640
MfeI	CAATTG	3 cut(s)	396, 612, 912
MflI	RGATCY	1 cut(s)	191
MhlI	GDGCHC	1 cut(s)	532
MlsI	TGGCCA	1 cut(s)	485
MluNI	TGGCCA	1 cut(s)	485
MlyI	GAGTC	1 cut(s)	174
Mox20I	TGGCCA	1 cut(s)	485
Mph1103I	ATGCAT	1 cut(s)	676
MroXI	GAANNNNTTC	1 cut(s)	812
MscI	TGGCCA	1 cut(s)	485
MseI	TTAA	1 cut(s)	431
Msp20I	TGGCCA	1 cut(s)	485
MspA1I	CMGCKG	1 cut(s)	419
MspI	CCGG	2 cut(s)	229, 903
MunI	CAATTG	3 cut(s)	396, 612, 912
Mva1269I	GAATGC	1 cut(s)	422
MwoI	GCNNNNNNNGC	8 cut(s)	207, 398, 482, 866, 875, 908, 923, 965
NcoI	CCATGG	1 cut(s)	890
NdeII	GATC	2 cut(s)	191, 844
NlaIII	CATG	4 cut(s)	490, 678, 894, 926
NlaIV	GGNNCC	2 cut(s)	585, 680
NmuCI	GTSAC	1 cut(s)	885
NsiI	ATGCAT	1 cut(s)	676
NspI	RCATGY	1 cut(s)	926
PctI	GAATGC	1 cut(s)	422
PdmI	GAANNNNTTC	1 cut(s)	812
PfeI	GAWTC	2 cut(s)	34, 71
PkrI	GCNGC	8 cut(s)	155, 394, 421, 475, 628, 719, 780, 880
PleI	GAGTC	1 cut(s)	173
PpsI	GAGTC	1 cut(s)	173
PpuMI	RGGWCCY	2 cut(s)	374, 679
Psp5II	RGGWCCY	2 cut(s)	374, 679
PspN4I	GGNNCC	2 cut(s)	585, 680
PspPI	GGNCC	2 cut(s)	374, 679
PspPPI	RGGWCCY	2 cut(s)	374, 679
PsrI	GAACNNNNNNTAC	2 cut(s)	306, 338
PsuI	RGATCY	1 cut(s)	191
PvuII	CAGCTG	1 cut(s)	419
RsaI	GTAC	1 cut(s)	88
RsaNI	GTAC	1 cut(s)	87
SaqAI	TTAA	1 cut(s)	431
SatI	GCNGC	8 cut(s)	154, 393, 420, 474, 627, 718, 779, 879
Sau3AI	GATC	2 cut(s)	191, 844
Sau96I	GGNCC	2 cut(s)	374, 679
SchI	GAGTC	1 cut(s)	174
SduI	GDGCHC	1 cut(s)	532
SfaNI	GCATC	3 cut(s)	182, 238, 661
SfcI	CTRYAG	1 cut(s)	312
SinI	GGWCC	2 cut(s)	374, 679
SmlI	CTYRAG	1 cut(s)	656
SmoI	CTYRAG	1 cut(s)	656
SsiI	CCGC	3 cut(s)	210, 474, 778
SspMI	CTAG	2 cut(s)	950, 1019
StyI	CCWWGG	1 cut(s)	890
TaaI	ACNGT	3 cut(s)	345, 547, 885
TaqI	TCGA	1 cut(s)	163
TaqII	GACCGA	1 cut(s)	641
TauI	GCSGC	2 cut(s)	476, 781
TfiI	GAWTC	2 cut(s)	34, 71
Tru1I	TTAA	1 cut(s)	431
Tru9I	TTAA	1 cut(s)	431
TscAI	CASTG	2 cut(s)	250, 532
TseFI	GTSAC	1 cut(s)	885
TseI	GCWGC	6 cut(s)	153, 392, 419, 626, 717, 878
Tsp45I	GTSAC	1 cut(s)	885
TspDTI	ATGAA	7 cut(s)	11, 219, 255, 457, 566, 747, 928
TspRI	CASTG	2 cut(s)	250, 532
VpaK11BI	GGWCC	2 cut(s)	374, 679
XceI	RCATGY	1 cut(s)	926
XmnI	GAANNNNTTC	1 cut(s)	812
XspI	CTAG	2 cut(s)	950, 1019
Zsp2I	ATGCAT	1 cut(s)	676

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.