Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006586.1

Orthogroup ID

OG0007177

Physical Location & Seq

Genomic Coordinates Forward (+)

55578 .. 56762

Gene Structure 1185 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006586.1_g000015.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

atgttaacagccttgccaattggagaatatgctgccgtaactcttttactattctttggtctcaaatcaataaaagatgcatgggaccttccatcaaatgttgttgagagtggtgataaaagcagccctgggcttgatgaatatgctgaagcagaggagcttgtaaaacagaaggcatcaaggcggctcactaatccacttgcaattatttggaaatcattcagccttgtatttgttgctgaatggggagatcgctcaatgcttgcgacaatcgctctgggtgctgcacagtctccatggggtgtggcgggtggagcaattgctggacacgcacttgctactttcattgccgttctaggaggtgcatttcttgccaaatacatttctgagaaactggttggctacattggtggtgctctgtttctagtttttgcagtagctacattttttggagttttctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009528 GO:0009536 GO:0009706 GO:0009941 GO:0016020 GO:0019866 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0042170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UPF0016

Protein Analysis

153

Amino Acids

16.16

Weight (kDa)

5.33

Isoelectric Point (pI)

33.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007177)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13590 AT4G13590
fragaria_vesca	FvH4_4g05550 FvH4_4g05550 FvH4_4g05550 FvH4_4g05550
malus_domestica	MD13G1229100.v1.1 MD13G1229200.v1.1 MD13G1229400.v1.1 MD16G1235000.v1.1 MD16G1235100.v1.1
prunus_persica	Prupe.1G057500_v2.0.a1
pyrus_communis	pycom13g20220
rosa_chinensis	RchiOBHm_Chr4g0396661
rosa_laevigata	RLG00000009512
rosa_multiflora	Rmu_sc0006586.1_g000015 Rmu_sc0010969.1_g000009
rosa_roxburghii	Rroxscaffold_5G00341520
rosa_rugosa	Rorug03G0348200 Rorug03G0348200
rosa_samantha	Rh4AG071100 Rh4BG069100 Rh4CG076900 Rh4DG066300
rosa_wichuraiana	Rw4G005680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	184, 308
AcuI	CTGAAG	1 cut(s)	168
AjnI	CCWGG	1 cut(s)	127
AluBI	AGCT	2 cut(s)	160, 440
AluI	AGCT	2 cut(s)	160, 440
Alw21I	GWGCWC	1 cut(s)	418
Alw26I	GTCTC	2 cut(s)	65, 297
ApeKI	GCWGC	3 cut(s)	32, 123, 284
Asp700I	GAANNNNTTC	1 cut(s)	218
AspS9I	GGNCC	1 cut(s)	85
AsuHPI	GGTGA	1 cut(s)	125
AvaII	GGWCC	1 cut(s)	85
Bbv12I	GWGCWC	1 cut(s)	418
BbvI	GCAGC	3 cut(s)	19, 135, 271
BccI	CCATC	1 cut(s)	100
BceAI	ACGGC	2 cut(s)	20, 335
BciT130I	CCWGG	1 cut(s)	129
BcoDI	GTCTC	2 cut(s)	65, 297
BfaI	CTAG	2 cut(s)	356, 425
BisI	GCNGC	4 cut(s)	33, 124, 185, 285
BlsI	GCNGC	4 cut(s)	34, 125, 186, 286
Bme1390I	CCNGG	1 cut(s)	129
Bme18I	GGWCC	1 cut(s)	85
BmgT120I	GGNCC	1 cut(s)	85
BmiI	GGNNCC	1 cut(s)	86
BmrFI	CCNGG	1 cut(s)	129
BmsI	GCATC	2 cut(s)	67, 185
BsaI	GGTCTC	1 cut(s)	65
BsaJI	CCNNGG	3 cut(s)	127, 128, 296
Bse1I	ACTGG	1 cut(s)	399
Bse3DI	GCAATG	1 cut(s)	345
BseBI	CCWGG	1 cut(s)	129
BseDI	CCNNGG	3 cut(s)	127, 128, 296
BseMI	GCAATG	1 cut(s)	345
BseMII	CTCAG	1 cut(s)	378
BseNI	ACTGG	1 cut(s)	399
BseRI	GAGGAG	1 cut(s)	170
BseXI	GCAGC	3 cut(s)	19, 135, 271
BsgI	GTGCAG	1 cut(s)	270
BsiHKAI	GWGCWC	1 cut(s)	418
BslFI	GGGAC	1 cut(s)	98
BsmAI	GTCTC	2 cut(s)	65, 297
BsmFI	GGGAC	1 cut(s)	98
Bso31I	GGTCTC	1 cut(s)	65
Bsp1286I	GDGCHC	1 cut(s)	418
Bsp143I	GATC	1 cut(s)	250
Bsp19I	CCATGG	1 cut(s)	296
BspACI	CCGC	2 cut(s)	184, 308
BspCNI	CTCAG	1 cut(s)	379
BspLI	GGNNCC	1 cut(s)	86
BspTNI	GGTCTC	1 cut(s)	65
BsrDI	GCAATG	1 cut(s)	345
BsrI	ACTGG	1 cut(s)	399
BssECI	CCNNGG	3 cut(s)	127, 128, 296
BssMI	GATC	1 cut(s)	250
BssT1I	CCWWGG	1 cut(s)	296
Bst2UI	CCWGG	1 cut(s)	129
Bst4CI	ACNGT	1 cut(s)	291
BstAPI	GCANNNNNTGC	1 cut(s)	371
BstC8I	GCNNGC	1 cut(s)	264
BstDEI	CTNAG	1 cut(s)	387
BstDSI	CCRYGG	1 cut(s)	296
BstKTI	GATC	1 cut(s)	253
BstMAI	GTCTC	2 cut(s)	65, 297
BstMBI	GATC	1 cut(s)	250
BstMWI	GCNNNNNNNGC	5 cut(s)	272, 281, 314, 329, 371
BstNI	CCWGG	1 cut(s)	129
BstSCI	CCNGG	1 cut(s)	127
BstV1I	GCAGC	3 cut(s)	19, 135, 271
BtgI	CCRYGG	1 cut(s)	296
Cac8I	GCNNGC	1 cut(s)	264
Cfr13I	GGNCC	1 cut(s)	85
CviAII	CATG	2 cut(s)	81, 297
CviJI	RGCY	8 cut(s)	11, 126, 133, 160, 187, 225, 402, 440
CviKI_1	RGCY	8 cut(s)	11, 126, 133, 160, 187, 225, 402, 440
DdeI	CTNAG	1 cut(s)	387
DpnI	GATC	1 cut(s)	252
DpnII	GATC	1 cut(s)	250
Eco130I	CCWWGG	1 cut(s)	296
Eco31I	GGTCTC	1 cut(s)	65
Eco47I	GGWCC	1 cut(s)	85
Eco57I	CTGAAG	1 cut(s)	168
EcoO109I	RGGNCCY	1 cut(s)	85
EcoRII	CCWGG	1 cut(s)	127
EcoT14I	CCWWGG	1 cut(s)	296
EcoT22I	ATGCAT	1 cut(s)	82
ErhI	CCWWGG	1 cut(s)	296
FaeI	CATG	2 cut(s)	84, 300
FaiI	YATR	4 cut(s)	30, 82, 144, 298
FaqI	GGGAC	1 cut(s)	98
FatI	CATG	2 cut(s)	80, 296
FauI	CCCGC	1 cut(s)	301
Fnu4HI	GCNGC	4 cut(s)	33, 124, 185, 285
Fsp4HI	GCNGC	4 cut(s)	33, 124, 185, 285
FspBI	CTAG	2 cut(s)	356, 425
GluI	GCNGC	4 cut(s)	33, 124, 185, 285
Hin1II	CATG	2 cut(s)	84, 300
HincII	GTYRAC	1 cut(s)	6
HindII	GTYRAC	1 cut(s)	6
HpaI	GTTAAC	1 cut(s)	6
HphI	GGTGA	1 cut(s)	125
Hpy166II	GTNNAC	1 cut(s)	6
Hpy188I	TCNGA	2 cut(s)	388, 461
Hpy8I	GTNNAC	1 cut(s)	6
HpyAV	CCTTC	2 cut(s)	98, 166
HpyCH4III	ACNGT	1 cut(s)	291
HpyCH4V	TGCA	5 cut(s)	80, 203, 287, 365, 434
HpyF10VI	GCNNNNNNNGC	5 cut(s)	272, 281, 314, 329, 371
HpyF3I	CTNAG	1 cut(s)	387
Hsp92II	CATG	2 cut(s)	84, 300
KspAI	GTTAAC	1 cut(s)	6
Kzo9I	GATC	1 cut(s)	250
LmnI	GCTCC	2 cut(s)	157, 314
LpnPI	CCDG	5 cut(s)	114, 141, 263, 309, 380
Lsp1109I	GCAGC	3 cut(s)	19, 135, 271
LweI	GCATC	2 cut(s)	67, 185
MaeI	CTAG	2 cut(s)	356, 425
MaeIII	GTNAC	1 cut(s)	37
MalI	GATC	1 cut(s)	252
MboI	GATC	1 cut(s)	250
MfeI	CAATTG	2 cut(s)	18, 318
MhlI	GDGCHC	1 cut(s)	418
MluCI	AATT	3 cut(s)	18, 204, 318
MnlI	CCTC	2 cut(s)	148, 353
Mph1103I	ATGCAT	1 cut(s)	82
MroXI	GAANNNNTTC	1 cut(s)	218
MseI	TTAA	1 cut(s)	5
MspR9I	CCNGG	1 cut(s)	129
MunI	CAATTG	2 cut(s)	18, 318
MvaI	CCWGG	1 cut(s)	129
MwoI	GCNNNNNNNGC	5 cut(s)	272, 281, 314, 329, 371
NcoI	CCATGG	1 cut(s)	296
NdeII	GATC	1 cut(s)	250
NlaIII	CATG	2 cut(s)	84, 300
NlaIV	GGNNCC	1 cut(s)	86
NsiI	ATGCAT	1 cut(s)	82
PasI	CCCWGGG	1 cut(s)	128
PdmI	GAANNNNTTC	1 cut(s)	218
PkrI	GCNGC	4 cut(s)	34, 125, 186, 286
PpuMI	RGGWCCY	1 cut(s)	85
Psp5II	RGGWCCY	1 cut(s)	85
Psp6I	CCWGG	1 cut(s)	127
PspGI	CCWGG	1 cut(s)	127
PspN4I	GGNNCC	1 cut(s)	86
PspPI	GGNCC	1 cut(s)	85
PspPPI	RGGWCCY	1 cut(s)	85
SaqAI	TTAA	1 cut(s)	5
SatI	GCNGC	4 cut(s)	33, 124, 185, 285
Sau3AI	GATC	1 cut(s)	250
Sau96I	GGNCC	1 cut(s)	85
ScrFI	CCNGG	1 cut(s)	129
SduI	GDGCHC	1 cut(s)	418
SetI	ASST	4 cut(s)	90, 162, 364, 442
SfaNI	GCATC	2 cut(s)	67, 185
SinI	GGWCC	1 cut(s)	85
Sse9I	AATT	3 cut(s)	18, 204, 318
SsiI	CCGC	2 cut(s)	184, 308
SspMI	CTAG	2 cut(s)	356, 425
StyD4I	CCNGG	1 cut(s)	127
StyI	CCWWGG	1 cut(s)	296
TaaI	ACNGT	1 cut(s)	291
TasI	AATT	3 cut(s)	18, 204, 318
TauI	GCSGC	1 cut(s)	187
Tru1I	TTAA	1 cut(s)	5
Tru9I	TTAA	1 cut(s)	5
TseI	GCWGC	3 cut(s)	32, 123, 284
TspDTI	ATGAA	2 cut(s)	153, 334
VpaK11BI	GGWCC	1 cut(s)	85
XmnI	GAANNNNTTC	1 cut(s)	218
XspI	CTAG	2 cut(s)	356, 425
Zsp2I	ATGCAT	1 cut(s)	82

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.