Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0007177

Physical Location & Seq

Genomic Coordinates Reverse (-)

4084839 .. 4090705

Gene Structure 5867 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G057500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1056 bp

ATGCAGGGATTGGGGCTTCCTCATACACCATTCATTCCAGGAAAGAAGCTTCCTTTGTCAGCTTTGGTGGACACTCTACCAAGCTGTCCCACTGTTTCTAGAAAGCCCATCTCACCCTCGTTAAGATATAGAGAGATATCAAGGCCCACGGGCAGCAAAGTACAAGTTCAAGCATCTAACGTTAGTATTGGATCTGGAGGCTATGATGGCAGGGAGGAAAACAAGAATGAGAAAATCGTTCCCAATGATGCACCCACTGACAGTTCATCTGAAATTGAGAAGCGTCAAATTCAAATCCCTTATCCTCTATCTGTGGGTCTTGTGCTACTTGGGTGTGCCTTAGTTTTTTCTCTGATTGCCTTTGTGAAAGGAGGACCTTCAACACTTTTAGCAGCAATTGCAAAATCAGGCTTCACAGCTGCATTTTCTTTAATATTTGTTTCTGAAATTGGTGACAAGACATTCTTCATTGCTGCACTCCTGGCCATGCAATATGACAAAGCACTGGTTCTGTTGGGGTCAACTGGTGCTCTTTCACTTATGACAATCCTGTCTGTCATTATTGGGCGAATATTTAACTCGGTGCCTGCTCAATTCCAGACAACCTTGCCAATTGGAGAATATGCAGCTGTAACTCTTCTACTATTCTTCGGTCTCAAATCAATAAAAGATGCATGGGACCTTCCATCAAATGTTGCTAAGAGTGGTGATAAGAGCAGCCCTGAGCTTGATGAATATGTTGAAGCTGAGGAGTTTGTGAAAGAGAAGGTGTCAAAGAGGCTCTCCAATCCGCTTGAAATTGTCTGGAAATCATTCACCCTTATATTTGTTGCTGAATGGGGAGATCGCTCAATGCTTGCCACGATTGCTCTTGGTGCTGCACAGTCTCCATGGGGTGTAGCAAGTGGAGCCATTGCTGGGCACGTACTTGCAACATCTATCGCTGTTCTAGGAGGTGCATTTCTTGCCAACTACATTTCTGAAAAACTGGTTGGCTATGTGGGCGGTGGTTTGTTTCTAGTTTTTGCAGTAGCCATATTTTTTGGATTTTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009528 GO:0009536 GO:0009706 GO:0009941 GO:0016020 GO:0019866 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0042170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UPF0016

Protein Analysis

352

Amino Acids

37.29

Weight (kDa)

7.68

Isoelectric Point (pI)

33.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007177)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13590 AT4G13590
fragaria_vesca	FvH4_4g05550 FvH4_4g05550 FvH4_4g05550 FvH4_4g05550
malus_domestica	MD13G1229100.v1.1 MD13G1229200.v1.1 MD13G1229400.v1.1 MD16G1235000.v1.1 MD16G1235100.v1.1
prunus_persica	Prupe.1G057500_v2.0.a1
pyrus_communis	pycom13g20220
rosa_chinensis	RchiOBHm_Chr4g0396661
rosa_laevigata	RLG00000009512
rosa_multiflora	Rmu_sc0006586.1_g000015 Rmu_sc0010969.1_g000009
rosa_roxburghii	Rroxscaffold_5G00341520
rosa_rugosa	Rorug03G0348200 Rorug03G0348200
rosa_samantha	Rh4AG071100 Rh4BG069100 Rh4CG076900 Rh4DG066300
rosa_wichuraiana	Rw4G005680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	550
AccB1I	GGYRCC	1 cut(s)	583
AciI	CCGC	2 cut(s)	791, 1005
AclI	AACGTT	1 cut(s)	180
AclWI	GGATC	1 cut(s)	199
AcoI	YGGCCR	1 cut(s)	483
AcsI	RAATTY	1 cut(s)	288
AfaI	GTAC	2 cut(s)	162, 927
AfiI	CCNNNNNNNGG	1 cut(s)	918
AgsI	TTSAA	5 cut(s)	170, 293, 381, 743, 797
AjnI	CCWGG	2 cut(s)	37, 480
AjuI	GAANNNNNNNTTGG	2 cut(s)	975, 1007
AluBI	AGCT	7 cut(s)	49, 62, 84, 419, 629, 727, 746
AluI	AGCT	7 cut(s)	49, 62, 84, 419, 629, 727, 746
Alw21I	GWGCWC	1 cut(s)	532
Alw26I	GTCTC	2 cut(s)	659, 891
AlwI	GGATC	1 cut(s)	199
AoxI	GGCC	2 cut(s)	143, 483
ApeKI	GCWGC	7 cut(s)	153, 392, 419, 473, 626, 717, 878
ApoI	RAATTY	1 cut(s)	288
Asp700I	GAANNNNTTC	1 cut(s)	812
AspS9I	GGNCC	3 cut(s)	144, 374, 679
AsuHPI	GGTGA	4 cut(s)	105, 464, 719, 808
AvaII	GGWCC	2 cut(s)	374, 679
BaeGI	GKGCMC	1 cut(s)	924
BalI	TGGCCA	1 cut(s)	485
BanI	GGYRCC	1 cut(s)	583
Bbv12I	GWGCWC	1 cut(s)	532
BbvCI	CCTCAGC	1 cut(s)	747
BbvI	GCAGC	7 cut(s)	165, 404, 406, 460, 638, 729, 865
BccI	CCATC	3 cut(s)	116, 200, 694
BciT130I	CCWGG	2 cut(s)	39, 482
BcoDI	GTCTC	2 cut(s)	659, 891
BfaI	CTAG	3 cut(s)	99, 950, 1019
BisI	GCNGC	7 cut(s)	154, 393, 420, 474, 627, 718, 879
BlsI	GCNGC	7 cut(s)	155, 394, 421, 475, 628, 719, 880
Bme1390I	CCNGG	2 cut(s)	39, 482
Bme18I	GGWCC	2 cut(s)	374, 679
BmgT120I	GGNCC	3 cut(s)	144, 374, 679
BmiI	GGNNCC	3 cut(s)	585, 680, 910
BmrFI	CCNGG	2 cut(s)	39, 482
BmsI	GCATC	3 cut(s)	182, 238, 661
BpmI	CTGGAG	1 cut(s)	216
Bpu10I	CCTNAGC	2 cut(s)	723, 747
BsaAI	YACGTR	1 cut(s)	925
BsaI	GGTCTC	1 cut(s)	659
BsaJI	CCNNGG	2 cut(s)	147, 890
Bsc4I	CCNNNNNNNGG	1 cut(s)	918
Bse1I	ACTGG	3 cut(s)	510, 529, 993
Bse3DI	GCAATG	2 cut(s)	468, 912
BseBI	CCWGG	2 cut(s)	39, 482
BseDI	CCNNGG	2 cut(s)	147, 890
BseLI	CCNNNNNNNGG	1 cut(s)	918
BseMI	GCAATG	2 cut(s)	468, 912
BseMII	CTCAG	2 cut(s)	714, 738
BseNI	ACTGG	3 cut(s)	510, 529, 993
BseRI	GAGGAG	1 cut(s)	764
BseSI	GKGCMC	1 cut(s)	924
BseXI	GCAGC	7 cut(s)	165, 404, 406, 460, 638, 729, 865
BseYI	CCCAGC	1 cut(s)	917
BsgI	GTGCAG	2 cut(s)	459, 864
BshFI	GGCC	2 cut(s)	145, 485
BshNI	GGYRCC	1 cut(s)	583
BsiHKAI	GWGCWC	1 cut(s)	532
BslFI	GGGAC	2 cut(s)	72, 692
BslI	CCNNNNNNNGG	1 cut(s)	918
BsmAI	GTCTC	2 cut(s)	659, 891
BsmFI	GGGAC	2 cut(s)	72, 692
BsnI	GGCC	2 cut(s)	145, 485
Bso31I	GGTCTC	1 cut(s)	659
Bsp1286I	GDGCHC	2 cut(s)	532, 924
Bsp143I	GATC	2 cut(s)	191, 844
Bsp19I	CCATGG	1 cut(s)	890
BspACI	CCGC	2 cut(s)	791, 1005
BspANI	GGCC	2 cut(s)	145, 485
BspCNI	CTCAG	2 cut(s)	715, 739
BspLI	GGNNCC	3 cut(s)	585, 680, 910
BspPI	GGATC	1 cut(s)	199
BspT107I	GGYRCC	1 cut(s)	583
BspTNI	GGTCTC	1 cut(s)	659
BsrDI	GCAATG	2 cut(s)	468, 912
BsrI	ACTGG	3 cut(s)	510, 529, 993
BssECI	CCNNGG	2 cut(s)	147, 890
BssMI	GATC	2 cut(s)	191, 844
BssT1I	CCWWGG	1 cut(s)	890
Bst2UI	CCWGG	2 cut(s)	39, 482
Bst4CI	ACNGT	3 cut(s)	94, 263, 885
Bst6I	CTCTTC	1 cut(s)	642
BstAPI	GCANNNNNTGC	2 cut(s)	398, 965
BstBAI	YACGTR	1 cut(s)	925
BstC8I	GCNNGC	2 cut(s)	588, 858
BstDEI	CTNAG	4 cut(s)	340, 699, 723, 747
BstDSI	CCRYGG	2 cut(s)	147, 890
BstKTI	GATC	2 cut(s)	194, 847
BstMAI	GTCTC	2 cut(s)	659, 891
BstMBI	GATC	2 cut(s)	191, 844
BstMWI	GCNNNNNNNGC	8 cut(s)	207, 398, 482, 866, 875, 908, 965, 1002
BstNI	CCWGG	2 cut(s)	39, 482
BstSCI	CCNGG	2 cut(s)	37, 480
BstSLI	GKGCMC	1 cut(s)	924
BstV1I	GCAGC	7 cut(s)	165, 404, 406, 460, 638, 729, 865
BstX2I	RGATCY	1 cut(s)	191
BstYI	RGATCY	1 cut(s)	191
BsuRI	GGCC	2 cut(s)	145, 485
BtgI	CCRYGG	2 cut(s)	147, 890
BtsIMutI	CAGTG	3 cut(s)	90, 255, 503
Cac8I	GCNNGC	2 cut(s)	588, 858
Cfr13I	GGNCC	3 cut(s)	144, 374, 679
CseI	GACGC	1 cut(s)	272
Csp6I	GTAC	2 cut(s)	161, 926
CviAII	CATG	3 cut(s)	487, 675, 891
CviQI	GTAC	2 cut(s)	161, 926
DdeI	CTNAG	4 cut(s)	340, 699, 723, 747
DpnI	GATC	2 cut(s)	193, 846
DpnII	GATC	2 cut(s)	191, 844
DrdI	GACNNNNNNGTC	1 cut(s)	550
DseDI	GACNNNNNNGTC	1 cut(s)	550
EaeI	YGGCCR	1 cut(s)	483
Eam1104I	CTCTTC	1 cut(s)	642
EarI	CTCTTC	1 cut(s)	642
Eco130I	CCWWGG	1 cut(s)	890
Eco31I	GGTCTC	1 cut(s)	659
Eco32I	GATATC	1 cut(s)	138
Eco47I	GGWCC	2 cut(s)	374, 679
EcoO109I	RGGNCCY	2 cut(s)	374, 679
EcoRII	CCWGG	2 cut(s)	37, 480
EcoRV	GATATC	1 cut(s)	138
EcoT14I	CCWWGG	1 cut(s)	890
EcoT22I	ATGCAT	1 cut(s)	676
ErhI	CCWWGG	1 cut(s)	890
FaeI	CATG	3 cut(s)	490, 678, 894
FalI	AAGNNNNNCTT	2 cut(s)	449, 481
FaqI	GGGAC	2 cut(s)	72, 692
FatI	CATG	3 cut(s)	486, 674, 890
Fnu4HI	GCNGC	7 cut(s)	154, 393, 420, 474, 627, 718, 879
Fsp4HI	GCNGC	7 cut(s)	154, 393, 420, 474, 627, 718, 879
FspBI	CTAG	3 cut(s)	99, 950, 1019
GluI	GCNGC	7 cut(s)	154, 393, 420, 474, 627, 718, 879
GsaI	CCCAGC	1 cut(s)	921
GsuI	CTGGAG	1 cut(s)	216
HaeIII	GGCC	2 cut(s)	145, 485
HgaI	GACGC	1 cut(s)	272
Hin1II	CATG	3 cut(s)	490, 678, 894
HincII	GTYRAC	1 cut(s)	522
HindII	GTYRAC	1 cut(s)	522
HindIII	AAGCTT	1 cut(s)	47
HphI	GGTGA	4 cut(s)	105, 464, 719, 808
Hpy166II	GTNNAC	2 cut(s)	70, 522
Hpy188I	TCNGA	4 cut(s)	271, 354, 445, 982
Hpy188III	TCNNGA	4 cut(s)	99, 195, 598, 805
Hpy8I	GTNNAC	2 cut(s)	70, 522
HpyAV	CCTTC	3 cut(s)	387, 692, 760
HpyCH4III	ACNGT	3 cut(s)	94, 263, 885
HpyCH4IV	ACGT	2 cut(s)	180, 924
HpyF10VI	GCNNNNNNNGC	8 cut(s)	207, 398, 482, 866, 875, 908, 965, 1002
HpyF3I	CTNAG	4 cut(s)	340, 699, 723, 747
HpySE526I	ACGT	2 cut(s)	180, 924
Hsp92II	CATG	3 cut(s)	490, 678, 894
Kzo9I	GATC	2 cut(s)	191, 844
LmnI	GCTCC	1 cut(s)	908
Lsp1109I	GCAGC	7 cut(s)	165, 404, 406, 460, 638, 729, 865
LweI	GCATC	3 cut(s)	182, 238, 661
MaeI	CTAG	3 cut(s)	99, 950, 1019
MaeII	ACGT	2 cut(s)	180, 924
MaeIII	GTNAC	2 cut(s)	452, 631
MalI	GATC	2 cut(s)	193, 846
MboI	GATC	2 cut(s)	191, 844
MboII	GAAGA	3 cut(s)	457, 629, 640
MfeI	CAATTG	2 cut(s)	396, 612
MflI	RGATCY	1 cut(s)	191
MhlI	GDGCHC	2 cut(s)	532, 924
MlsI	TGGCCA	1 cut(s)	485
MluCI	AATT	7 cut(s)	273, 288, 396, 447, 593, 612, 798
MluNI	TGGCCA	1 cut(s)	485
MnlI	CCTC	9 cut(s)	30, 127, 191, 208, 315, 365, 742, 771, 947
Mox20I	TGGCCA	1 cut(s)	485
Mph1103I	ATGCAT	1 cut(s)	676
MroXI	GAANNNNTTC	1 cut(s)	812
MscI	TGGCCA	1 cut(s)	485
MseI	TTAA	3 cut(s)	122, 431, 576
Msp20I	TGGCCA	1 cut(s)	485
MspA1I	CMGCKG	2 cut(s)	419, 629
MspR9I	CCNGG	2 cut(s)	39, 482
MunI	CAATTG	2 cut(s)	396, 612
MvaI	CCWGG	2 cut(s)	39, 482
MwoI	GCNNNNNNNGC	8 cut(s)	207, 398, 482, 866, 875, 908, 965, 1002
NcoI	CCATGG	1 cut(s)	890
NdeII	GATC	2 cut(s)	191, 844
NlaIII	CATG	3 cut(s)	490, 678, 894
NlaIV	GGNNCC	3 cut(s)	585, 680, 910
NmuCI	GTSAC	1 cut(s)	452
NsiI	ATGCAT	1 cut(s)	676
PdmI	GAANNNNTTC	1 cut(s)	812
PfoI	TCCNGGA	1 cut(s)	37
PkrI	GCNGC	7 cut(s)	155, 394, 421, 475, 628, 719, 880
Ppu21I	YACGTR	1 cut(s)	925
PpuMI	RGGWCCY	2 cut(s)	374, 679
Psp1406I	AACGTT	1 cut(s)	180
Psp5II	RGGWCCY	2 cut(s)	374, 679
Psp6I	CCWGG	2 cut(s)	37, 480
PspFI	CCCAGC	1 cut(s)	917
PspGI	CCWGG	2 cut(s)	37, 480
PspN4I	GGNNCC	3 cut(s)	585, 680, 910
PspPI	GGNCC	3 cut(s)	144, 374, 679
PspPPI	RGGWCCY	2 cut(s)	374, 679
PsuI	RGATCY	1 cut(s)	191
PvuII	CAGCTG	2 cut(s)	419, 629
RsaI	GTAC	2 cut(s)	162, 927
RsaNI	GTAC	2 cut(s)	161, 926
SaqAI	TTAA	3 cut(s)	122, 431, 576
SatI	GCNGC	7 cut(s)	154, 393, 420, 474, 627, 718, 879
Sau3AI	GATC	2 cut(s)	191, 844
Sau96I	GGNCC	3 cut(s)	144, 374, 679
ScrFI	CCNGG	2 cut(s)	39, 482
SduI	GDGCHC	2 cut(s)	532, 924
SfaNI	GCATC	3 cut(s)	182, 238, 661
SinI	GGWCC	2 cut(s)	374, 679
Sse9I	AATT	7 cut(s)	273, 288, 396, 447, 593, 612, 798
SsiI	CCGC	2 cut(s)	791, 1005
SspI	AATATT	2 cut(s)	435, 573
SspMI	CTAG	3 cut(s)	99, 950, 1019
StyD4I	CCNGG	2 cut(s)	37, 480
StyI	CCWWGG	1 cut(s)	890
TaaI	ACNGT	3 cut(s)	94, 263, 885
TaiI	ACGT	2 cut(s)	183, 927
TaqII	GACCGA	1 cut(s)	641
TasI	AATT	7 cut(s)	273, 288, 396, 447, 593, 612, 798
TatI	WGTACW	1 cut(s)	160
Tru1I	TTAA	3 cut(s)	122, 431, 576
Tru9I	TTAA	3 cut(s)	122, 431, 576
TscAI	CASTG	3 cut(s)	97, 262, 510
TseFI	GTSAC	1 cut(s)	452
TseI	GCWGC	7 cut(s)	153, 392, 419, 473, 626, 717, 878
Tsp45I	GTSAC	1 cut(s)	452
TspDTI	ATGAA	4 cut(s)	22, 255, 457, 747
TspRI	CASTG	3 cut(s)	97, 262, 510
VpaK11BI	GGWCC	2 cut(s)	374, 679
XapI	RAATTY	1 cut(s)	288
XbaI	TCTAGA	1 cut(s)	98
XmnI	GAANNNNTTC	1 cut(s)	812
XspI	CTAG	3 cut(s)	99, 950, 1019
Zsp2I	ATGCAT	1 cut(s)	676

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.