Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0007177

Physical Location & Seq

Genomic Coordinates Reverse (-)

13922438 .. 13927075

Gene Structure 4638 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG076900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 987 bp

ATGGAGGGGTTGGTGCTTGTTCATACACCATTGATTCCTAGAAAGAAGCTTCCTTTGTTGGCTTTGGTGGATGCTCTACCATCTTATACCACTCTTTCTAGAAAACCCATCACACCCTCAATAAGATATAGAGAGTTATCACGATTGGCGGGCAGCAAAGTTCGAGCCCAAGCATCTAATGTTAGTATTGGATCTGGAGGCTATGAAAGCGGGGAGGAAAATAAGAAGCAGAAAATTGTTTCCAGTGATGCAAACAACAACAGTTCATCAGAAGTTGAGAAGCCTCCAATTCAAATCCCTTATCCTCTCTCTGTAGCTCTTGTTCTACTTGGGTGTGGCTTGCTGTTTTCTCTGATTGCCTTTGTGAGAGGAGGACCTTCAACAATTTTAGCAGCAATTGCAAAATCAGGCTTCACAGCTGCATTCTCTTTAATATTTGTTTCAGAAATTGGCGACAAGACATTCTTCATTGCTGCACTCTTGGCCATGCAATATGAGAAAGGACTGGTTCTGTTGGGGTCAATGGGTGCTCTTGCACTTATGACAATTCTGTCTGTCATTATTGGGCGTATATTTCATTCGGTGCCTGCTCAGTTCCAGACAACCTTGCCAATTGGAGAATATGCTGCCGTAACTCTTTTACTATTCTTTGGTCTCAAATCAATAAAAGATGCATGGGACCTTCCATCAAATGTTGTTGAGAGTGGTGATAAAAGCAGCCCTGGGCTTGATGAATATGCTGAAGCAGAGGAGCTTGTAAAACAGAAGGCATCAAGGCGGCTCACTAATCCACTTGCAATTATTTGGAAATCATTCAGCCTTGTATTTGTTGCTGTAAGTATATATTCTTTGGACTTATCTGTAGCAACGTGTGGCATGCTTACATGTCCTTGGGTATTATTATTTCCAGACATGTTTGACATTAAGGGGAAAAAAAGTTTTATAAAAAAAAAATTCTCCATGACCTGCAACCTGATCTCAGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009528 GO:0009536 GO:0009706 GO:0009941 GO:0016020 GO:0019866 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0042170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UPF0016

Protein Analysis

328

Amino Acids

35.43

Weight (kDa)

9.23

Isoelectric Point (pI)

26.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GDT1	PF01169	140 - 218	7.9e-17	Divalent cation/proton antiporter GDT1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007177)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13590 AT4G13590
fragaria_vesca	FvH4_4g05550 FvH4_4g05550 FvH4_4g05550 FvH4_4g05550
malus_domestica	MD13G1229100.v1.1 MD13G1229200.v1.1 MD13G1229400.v1.1 MD16G1235000.v1.1 MD16G1235100.v1.1
prunus_persica	Prupe.1G057500_v2.0.a1
pyrus_communis	pycom13g20220
rosa_chinensis	RchiOBHm_Chr4g0396661
rosa_laevigata	RLG00000009512
rosa_multiflora	Rmu_sc0006586.1_g000015 Rmu_sc0010969.1_g000009
rosa_roxburghii	Rroxscaffold_5G00341520
rosa_rugosa	Rorug03G0348200 Rorug03G0348200
rosa_samantha	Rh4AG071100 Rh4BG069100 Rh4CG076900 Rh4DG066300
rosa_wichuraiana	Rw4G005680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	944
AasI	GACNNNNNNGTC	1 cut(s)	550
Acc36I	ACCTGC	1 cut(s)	974
AccB1I	GGYRCC	1 cut(s)	583
AciI	CCGC	3 cut(s)	149, 210, 778
AclWI	GGATC	1 cut(s)	199
AcoI	YGGCCR	1 cut(s)	483
AcsI	RAATTY	1 cut(s)	953
AcuI	CTGAAG	1 cut(s)	762
AflIII	ACRYGT	3 cut(s)	869, 884, 912
AgsI	TTSAA	2 cut(s)	293, 381
AjnI	CCWGG	1 cut(s)	721
AluBI	AGCT	4 cut(s)	49, 317, 419, 754
AluI	AGCT	4 cut(s)	49, 317, 419, 754
Alw21I	GWGCWC	1 cut(s)	532
Alw26I	GTCTC	1 cut(s)	659
AlwI	GGATC	1 cut(s)	199
AoxI	GGCC	1 cut(s)	483
ApeKI	GCWGC	6 cut(s)	153, 392, 419, 473, 626, 717
ApoI	RAATTY	1 cut(s)	953
Asp700I	GAANNNNTTC	1 cut(s)	812
AspS9I	GGNCC	2 cut(s)	374, 679
AsuHPI	GGTGA	1 cut(s)	719
AvaII	GGWCC	2 cut(s)	374, 679
BalI	TGGCCA	1 cut(s)	485
BanI	GGYRCC	1 cut(s)	583
BanII	GRGCYC	1 cut(s)	169
Bbv12I	GWGCWC	1 cut(s)	532
BbvI	GCAGC	6 cut(s)	165, 404, 406, 460, 613, 729
BccI	CCATC	3 cut(s)	88, 116, 694
BceAI	ACGGC	1 cut(s)	614
BciT130I	CCWGG	1 cut(s)	723
BcoDI	GTCTC	1 cut(s)	659
BfaI	CTAG	2 cut(s)	39, 99
BfmI	CTRYAG	2 cut(s)	312, 861
BfuAI	ACCTGC	1 cut(s)	974
BisI	GCNGC	7 cut(s)	154, 393, 420, 474, 627, 718, 779
BlsI	GCNGC	7 cut(s)	155, 394, 421, 475, 628, 719, 780
Bme1390I	CCNGG	1 cut(s)	723
Bme18I	GGWCC	2 cut(s)	374, 679
BmgT120I	GGNCC	2 cut(s)	374, 679
BmiI	GGNNCC	2 cut(s)	585, 680
BmrFI	CCNGG	1 cut(s)	723
BmsI	GCATC	5 cut(s)	61, 182, 238, 661, 779
BpmI	CTGGAG	1 cut(s)	216
BsaI	GGTCTC	1 cut(s)	659
BsaJI	CCNNGG	3 cut(s)	721, 722, 890
Bse1I	ACTGG	2 cut(s)	243, 510
Bse3DI	GCAATG	1 cut(s)	468
BseBI	CCWGG	1 cut(s)	723
BseDI	CCNNGG	3 cut(s)	721, 722, 890
BseGI	GGATG	1 cut(s)	76
BseMI	GCAATG	1 cut(s)	468
BseMII	CTCAG	1 cut(s)	605
BseNI	ACTGG	2 cut(s)	243, 510
BseRI	GAGGAG	2 cut(s)	384, 764
BseXI	GCAGC	6 cut(s)	165, 404, 406, 460, 613, 729
BsgI	GTGCAG	1 cut(s)	459
BshFI	GGCC	1 cut(s)	485
BshNI	GGYRCC	1 cut(s)	583
BsiHKAI	GWGCWC	1 cut(s)	532
BslFI	GGGAC	1 cut(s)	692
BsmAI	GTCTC	1 cut(s)	659
BsmFI	GGGAC	1 cut(s)	692
BsmI	GAATGC	1 cut(s)	422
BsnI	GGCC	1 cut(s)	485
Bso31I	GGTCTC	1 cut(s)	659
Bsp1286I	GDGCHC	2 cut(s)	169, 532
Bsp143I	GATC	2 cut(s)	191, 975
BspACI	CCGC	3 cut(s)	149, 210, 778
BspANI	GGCC	1 cut(s)	485
BspCNI	CTCAG	1 cut(s)	604
BspLI	GGNNCC	2 cut(s)	585, 680
BspMI	ACCTGC	1 cut(s)	974
BspPI	GGATC	1 cut(s)	199
BspT107I	GGYRCC	1 cut(s)	583
BspTNI	GGTCTC	1 cut(s)	659
BsrDI	GCAATG	1 cut(s)	468
BsrI	ACTGG	2 cut(s)	243, 510
BssECI	CCNNGG	3 cut(s)	721, 722, 890
BssMI	GATC	2 cut(s)	191, 975
BssT1I	CCWWGG	1 cut(s)	890
Bst2UI	CCWGG	1 cut(s)	723
Bst4CI	ACNGT	1 cut(s)	263
BstAPI	GCANNNNNTGC	1 cut(s)	398
BstC8I	GCNNGC	4 cut(s)	151, 341, 588, 878
BstDEI	CTNAG	2 cut(s)	591, 979
BstF5I	GGATG	1 cut(s)	76
BstKTI	GATC	2 cut(s)	194, 978
BstMAI	GTCTC	1 cut(s)	659
BstMBI	GATC	2 cut(s)	191, 975
BstMWI	GCNNNNNNNGC	3 cut(s)	207, 398, 482
BstNI	CCWGG	1 cut(s)	723
BstNSI	RCATGY	3 cut(s)	880, 888, 916
BstSCI	CCNGG	1 cut(s)	721
BstSFI	CTRYAG	2 cut(s)	312, 861
BstV1I	GCAGC	6 cut(s)	165, 404, 406, 460, 613, 729
BstX2I	RGATCY	1 cut(s)	191
BstYI	RGATCY	1 cut(s)	191
BsuRI	GGCC	1 cut(s)	485
BtsCI	GGATG	1 cut(s)	76
BtsIMutI	CAGTG	2 cut(s)	250, 987
BveI	ACCTGC	1 cut(s)	974
Cac8I	GCNNGC	4 cut(s)	151, 341, 588, 878
Cfr13I	GGNCC	2 cut(s)	374, 679
CviAII	CATG	6 cut(s)	487, 675, 877, 885, 913, 961
DdeI	CTNAG	2 cut(s)	591, 979
DpnI	GATC	2 cut(s)	193, 977
DpnII	GATC	2 cut(s)	191, 975
DrdI	GACNNNNNNGTC	1 cut(s)	550
DseDI	GACNNNNNNGTC	1 cut(s)	550
EaeI	YGGCCR	1 cut(s)	483
Eco130I	CCWWGG	1 cut(s)	890
Eco24I	GRGCYC	1 cut(s)	169
Eco31I	GGTCTC	1 cut(s)	659
Eco47I	GGWCC	2 cut(s)	374, 679
Eco57I	CTGAAG	1 cut(s)	762
EcoO109I	RGGNCCY	2 cut(s)	374, 679
EcoRII	CCWGG	1 cut(s)	721
EcoT14I	CCWWGG	1 cut(s)	890
EcoT22I	ATGCAT	1 cut(s)	676
EcoT38I	GRGCYC	1 cut(s)	169
ErhI	CCWWGG	1 cut(s)	890
FaeI	CATG	6 cut(s)	490, 678, 880, 888, 916, 964
FalI	AAGNNNNNCTT	2 cut(s)	449, 481
FaqI	GGGAC	1 cut(s)	692
FatI	CATG	6 cut(s)	486, 674, 876, 884, 912, 960
FauI	CCCGC	2 cut(s)	142, 203
Fnu4HI	GCNGC	7 cut(s)	154, 393, 420, 474, 627, 718, 779
FokI	GGATG	1 cut(s)	83
FriOI	GRGCYC	1 cut(s)	169
Fsp4HI	GCNGC	7 cut(s)	154, 393, 420, 474, 627, 718, 779
FspBI	CTAG	2 cut(s)	39, 99
GluI	GCNGC	7 cut(s)	154, 393, 420, 474, 627, 718, 779
GsuI	CTGGAG	1 cut(s)	216
HaeIII	GGCC	1 cut(s)	485
Hin1II	CATG	6 cut(s)	490, 678, 880, 888, 916, 964
HindIII	AAGCTT	1 cut(s)	47
HinfI	GANTC	1 cut(s)	34
HphI	GGTGA	1 cut(s)	719
Hpy188I	TCNGA	3 cut(s)	271, 354, 445
Hpy188III	TCNNGA	5 cut(s)	99, 141, 195, 598, 908
HpyAV	CCTTC	3 cut(s)	387, 692, 760
HpyCH4III	ACNGT	1 cut(s)	263
HpyCH4IV	ACGT	1 cut(s)	869
HpyCH4V	TGCA	9 cut(s)	251, 401, 422, 476, 490, 536, 674, 797, 969
HpyF10VI	GCNNNNNNNGC	3 cut(s)	207, 398, 482
HpyF3I	CTNAG	2 cut(s)	591, 979
HpySE526I	ACGT	1 cut(s)	869
Hsp92II	CATG	6 cut(s)	490, 678, 880, 888, 916, 964
Kzo9I	GATC	2 cut(s)	191, 975
LmnI	GCTCC	1 cut(s)	751
Lsp1109I	GCAGC	6 cut(s)	165, 404, 406, 460, 613, 729
LweI	GCATC	5 cut(s)	61, 182, 238, 661, 779
MaeI	CTAG	2 cut(s)	39, 99
MaeII	ACGT	1 cut(s)	869
MaeIII	GTNAC	1 cut(s)	631
MalI	GATC	2 cut(s)	193, 977
MboI	GATC	2 cut(s)	191, 975
MboII	GAAGA	1 cut(s)	457
MfeI	CAATTG	2 cut(s)	396, 612
MflI	RGATCY	1 cut(s)	191
MhlI	GDGCHC	2 cut(s)	169, 532
MlsI	TGGCCA	1 cut(s)	485
MluCI	AATT	9 cut(s)	234, 288, 384, 396, 447, 546, 612, 798, 953
MluNI	TGGCCA	1 cut(s)	485
MnlI	CCTC	8 cut(s)	127, 191, 208, 294, 315, 362, 365, 742
Mox20I	TGGCCA	1 cut(s)	485
Mph1103I	ATGCAT	1 cut(s)	676
MroXI	GAANNNNTTC	1 cut(s)	812
MscI	TGGCCA	1 cut(s)	485
MseI	TTAA	2 cut(s)	431, 924
Msp20I	TGGCCA	1 cut(s)	485
MspA1I	CMGCKG	1 cut(s)	419
MspR9I	CCNGG	1 cut(s)	723
MunI	CAATTG	2 cut(s)	396, 612
Mva1269I	GAATGC	1 cut(s)	422
MvaI	CCWGG	1 cut(s)	723
MwoI	GCNNNNNNNGC	3 cut(s)	207, 398, 482
NdeII	GATC	2 cut(s)	191, 975
NlaIII	CATG	6 cut(s)	490, 678, 880, 888, 916, 964
NlaIV	GGNNCC	2 cut(s)	585, 680
NsiI	ATGCAT	1 cut(s)	676
NspI	RCATGY	3 cut(s)	880, 888, 916
PaeI	GCATGC	1 cut(s)	880
PasI	CCCWGGG	1 cut(s)	722
PciI	ACATGT	2 cut(s)	884, 912
PctI	GAATGC	1 cut(s)	422
PdmI	GAANNNNTTC	1 cut(s)	812
PfeI	GAWTC	1 cut(s)	34
PkrI	GCNGC	7 cut(s)	155, 394, 421, 475, 628, 719, 780
PpuMI	RGGWCCY	2 cut(s)	374, 679
PscI	ACATGT	2 cut(s)	884, 912
PsiI	TTATAA	1 cut(s)	944
Psp5II	RGGWCCY	2 cut(s)	374, 679
Psp6I	CCWGG	1 cut(s)	721
PspGI	CCWGG	1 cut(s)	721
PspN4I	GGNNCC	2 cut(s)	585, 680
PspPI	GGNCC	2 cut(s)	374, 679
PspPPI	RGGWCCY	2 cut(s)	374, 679
PsrI	GAACNNNNNNTAC	2 cut(s)	306, 338
PsuI	RGATCY	1 cut(s)	191
PvuII	CAGCTG	1 cut(s)	419
SaqAI	TTAA	2 cut(s)	431, 924
SatI	GCNGC	7 cut(s)	154, 393, 420, 474, 627, 718, 779
Sau3AI	GATC	2 cut(s)	191, 975
Sau96I	GGNCC	2 cut(s)	374, 679
ScrFI	CCNGG	1 cut(s)	723
SduI	GDGCHC	2 cut(s)	169, 532
SfaNI	GCATC	5 cut(s)	61, 182, 238, 661, 779
SfcI	CTRYAG	2 cut(s)	312, 861
SinI	GGWCC	2 cut(s)	374, 679
SphI	GCATGC	1 cut(s)	880
Sse9I	AATT	9 cut(s)	234, 288, 384, 396, 447, 546, 612, 798, 953
SsiI	CCGC	3 cut(s)	149, 210, 778
SspI	AATATT	1 cut(s)	435
SspMI	CTAG	2 cut(s)	39, 99
StyD4I	CCNGG	1 cut(s)	721
StyI	CCWWGG	1 cut(s)	890
TaaI	ACNGT	1 cut(s)	263
TaiI	ACGT	1 cut(s)	872
TaqI	TCGA	1 cut(s)	163
TasI	AATT	9 cut(s)	234, 288, 384, 396, 447, 546, 612, 798, 953
TauI	GCSGC	1 cut(s)	781
TfiI	GAWTC	1 cut(s)	34
Tru1I	TTAA	2 cut(s)	431, 924
Tru9I	TTAA	2 cut(s)	431, 924
TscAI	CASTG	2 cut(s)	250, 987
TseI	GCWGC	6 cut(s)	153, 392, 419, 473, 626, 717
TspDTI	ATGAA	6 cut(s)	11, 219, 255, 457, 566, 747
TspRI	CASTG	2 cut(s)	250, 987
VpaK11BI	GGWCC	2 cut(s)	374, 679
XapI	RAATTY	1 cut(s)	953
XbaI	TCTAGA	1 cut(s)	98
XceI	RCATGY	3 cut(s)	880, 888, 916
XmnI	GAANNNNTTC	1 cut(s)	812
XspI	CTAG	2 cut(s)	39, 99
Zsp2I	ATGCAT	1 cut(s)	676

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.