Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0007177

Physical Location & Seq

Genomic Coordinates Forward (+)

22468002 .. 22472204

Gene Structure 4203 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1229100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

ATGCAGGGATTGGGATTGGGGATTCTTCATACGCCATTGGCATTCCATCCAAGCAAGAAGCTGACAACTCTTCCAAGCTGTTCCGCCCTTTCCACAAAACCCTCATTAAGGTGTAGACAGATATCGAGGTCCGCCAGCAGAAAAGTACAAGTCCAAGCATCTAATGTTAGTATCGGATCTGGAGGCTATGAAGACAGTGAGGAAAACAAGAACAAGAAAATCTTTCCCAGTGATGCACCCAATAACGGTTCATCTGAAATTGAGAAGCCTCCAGTTCAAATCCCTTATCCTCTCTCCGTGGGTCTTGTGCTGCTTGGGTGTGCCTTAGTTTTTGCTCTCATTGCATTTGTGAAAGGAGGACCTTCAACACTTTTAGCGGCAATCGCAAAATCAGGCTTTACAGCTGCATTTTCTCTAATATTTGTTTCCGAAATTGGTGACAAGACATTCTTTATTGCTGCACTCCTGGCCATGCAATATGACAAGGCACTGGTTCTGTTGGGTTCAACCGGTGCTCTTACACTTATGACAGTCCTGTCTGTCATTATTGGGCGAATATTTAACTCGGTCCCTGCTCAATTCCAGACAATTGATAATCCTTGCCAATTGGAGAATATGCTGCCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009528 GO:0009536 GO:0009706 GO:0009941 GO:0016020 GO:0019866 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0042170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UPF0016

Protein Analysis

209

Amino Acids

21.98

Weight (kDa)

9.12

Isoelectric Point (pI)

37.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GDT1	PF01169	135 - 193	1.3e-17	Divalent cation/proton antiporter GDT1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007177)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13590 AT4G13590
fragaria_vesca	FvH4_4g05550 FvH4_4g05550 FvH4_4g05550 FvH4_4g05550
malus_domestica	MD13G1229100.v1.1 MD13G1229200.v1.1 MD13G1229400.v1.1 MD16G1235000.v1.1 MD16G1235100.v1.1
prunus_persica	Prupe.1G057500_v2.0.a1
pyrus_communis	pycom13g20220
rosa_chinensis	RchiOBHm_Chr4g0396661
rosa_laevigata	RLG00000009512
rosa_multiflora	Rmu_sc0006586.1_g000015 Rmu_sc0010969.1_g000009
rosa_roxburghii	Rroxscaffold_5G00341520
rosa_rugosa	Rorug03G0348200 Rorug03G0348200
rosa_samantha	Rh4AG071100 Rh4BG069100 Rh4CG076900 Rh4DG066300
rosa_wichuraiana	Rw4G005680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	535
AccI	GTMKAC	1 cut(s)	115
AciI	CCGC	3 cut(s)	84, 132, 377
AclWI	GGATC	1 cut(s)	184
AcoI	YGGCCR	1 cut(s)	468
AfaI	GTAC	1 cut(s)	147
AfiI	CCNNNNNNNGG	2 cut(s)	108, 245
AgeI	ACCGGT	1 cut(s)	509
AgsI	TTSAA	3 cut(s)	278, 366, 507
AjnI	CCWGG	1 cut(s)	465
AluBI	AGCT	3 cut(s)	61, 78, 404
AluI	AGCT	3 cut(s)	61, 78, 404
Alw21I	GWGCWC	1 cut(s)	517
AlwI	GGATC	1 cut(s)	184
AoxI	GGCC	1 cut(s)	468
ApeKI	GCWGC	4 cut(s)	310, 404, 458, 619
AsiGI	ACCGGT	1 cut(s)	509
AspS9I	GGNCC	3 cut(s)	129, 359, 568
AsuHPI	GGTGA	1 cut(s)	449
AvaII	GGWCC	3 cut(s)	129, 359, 568
BalI	TGGCCA	1 cut(s)	470
BbsI	GAAGAC	1 cut(s)	198
Bbv12I	GWGCWC	1 cut(s)	517
BbvI	GCAGC	4 cut(s)	297, 391, 445, 606
BccI	CCATC	1 cut(s)	54
BceAI	ACGGC	1 cut(s)	607
BciT130I	CCWGG	1 cut(s)	467
BisI	GCNGC	5 cut(s)	311, 378, 405, 459, 620
BlsI	GCNGC	5 cut(s)	312, 379, 406, 460, 621
Bme1390I	CCNGG	1 cut(s)	467
Bme18I	GGWCC	3 cut(s)	129, 359, 568
BmgT120I	GGNCC	3 cut(s)	129, 359, 568
BmiI	GGNNCC	1 cut(s)	570
BmrFI	CCNGG	1 cut(s)	467
BmrI	ACTGGG	1 cut(s)	222
BmsI	GCATC	2 cut(s)	167, 223
BmuI	ACTGGG	1 cut(s)	222
BpiI	GAAGAC	1 cut(s)	198
BpmI	CTGGAG	2 cut(s)	201, 255
BsaJI	CCNNGG	1 cut(s)	297
BsaWI	WCCGGW	1 cut(s)	509
Bsc4I	CCNNNNNNNGG	2 cut(s)	108, 245
Bse118I	RCCGGY	1 cut(s)	509
Bse1I	ACTGG	3 cut(s)	228, 272, 495
Bse3DI	GCAATG	1 cut(s)	339
BseBI	CCWGG	1 cut(s)	467
BseDI	CCNNGG	1 cut(s)	297
BseGI	GGATG	1 cut(s)	46
BseLI	CCNNNNNNNGG	2 cut(s)	108, 245
BseMI	GCAATG	1 cut(s)	339
BseNI	ACTGG	3 cut(s)	228, 272, 495
BseXI	GCAGC	4 cut(s)	297, 391, 445, 606
BsgI	GTGCAG	1 cut(s)	444
BshFI	GGCC	1 cut(s)	470
BshTI	ACCGGT	1 cut(s)	509
BsiHKAI	GWGCWC	1 cut(s)	517
BsiSI	CCGG	1 cut(s)	510
BslFI	GGGAC	1 cut(s)	554
BslI	CCNNNNNNNGG	2 cut(s)	108, 245
BsmFI	GGGAC	1 cut(s)	554
BsmI	GAATGC	1 cut(s)	41
BsnI	GGCC	1 cut(s)	470
Bsp1286I	GDGCHC	1 cut(s)	517
Bsp143I	GATC	1 cut(s)	176
BspACI	CCGC	3 cut(s)	84, 132, 377
BspANI	GGCC	1 cut(s)	470
BspLI	GGNNCC	1 cut(s)	570
BspPI	GGATC	1 cut(s)	184
BsrDI	GCAATG	1 cut(s)	339
BsrFI	RCCGGY	1 cut(s)	509
BsrI	ACTGG	3 cut(s)	228, 272, 495
BssAI	RCCGGY	1 cut(s)	509
BssECI	CCNNGG	1 cut(s)	297
BssMI	GATC	1 cut(s)	176
Bst2UI	CCWGG	1 cut(s)	467
Bst4CI	ACNGT	3 cut(s)	197, 248, 532
Bst6I	CTCTTC	1 cut(s)	75
BstC8I	GCNNGC	1 cut(s)	136
BstDEI	CTNAG	1 cut(s)	325
BstDSI	CCRYGG	1 cut(s)	297
BstENI	CCTNNNNNAGG	1 cut(s)	106
BstF5I	GGATG	1 cut(s)	46
BstKTI	GATC	1 cut(s)	179
BstMBI	GATC	1 cut(s)	176
BstMWI	GCNNNNNNNGC	3 cut(s)	341, 383, 467
BstNI	CCWGG	1 cut(s)	467
BstSCI	CCNGG	1 cut(s)	465
BstV1I	GCAGC	4 cut(s)	297, 391, 445, 606
BstV2I	GAAGAC	1 cut(s)	198
BstX2I	RGATCY	1 cut(s)	176
BstYI	RGATCY	1 cut(s)	176
BsuRI	GGCC	1 cut(s)	470
BtgI	CCRYGG	1 cut(s)	297
BtsCI	GGATG	1 cut(s)	46
BtsIMutI	CAGTG	3 cut(s)	202, 235, 488
Cac8I	GCNNGC	1 cut(s)	136
Cfr10I	RCCGGY	1 cut(s)	509
Cfr13I	GGNCC	3 cut(s)	129, 359, 568
Csp6I	GTAC	1 cut(s)	146
CspAI	ACCGGT	1 cut(s)	509
CviAII	CATG	1 cut(s)	472
CviJI	RGCY	7 cut(s)	61, 78, 186, 268, 396, 404, 470
CviKI_1	RGCY	7 cut(s)	61, 78, 186, 268, 396, 404, 470
CviQI	GTAC	1 cut(s)	146
DdeI	CTNAG	1 cut(s)	325
DpnI	GATC	1 cut(s)	178
DpnII	GATC	1 cut(s)	176
DrdI	GACNNNNNNGTC	1 cut(s)	535
DseDI	GACNNNNNNGTC	1 cut(s)	535
EaeI	YGGCCR	1 cut(s)	468
Eam1104I	CTCTTC	1 cut(s)	75
EarI	CTCTTC	1 cut(s)	75
EciI	GGCGGA	2 cut(s)	73, 121
Eco32I	GATATC	1 cut(s)	123
Eco47I	GGWCC	3 cut(s)	129, 359, 568
EcoNI	CCTNNNNNAGG	1 cut(s)	106
EcoO109I	RGGNCCY	1 cut(s)	359
EcoRII	CCWGG	1 cut(s)	465
EcoRV	GATATC	1 cut(s)	123
FaeI	CATG	1 cut(s)	475
FaiI	YATR	6 cut(s)	30, 189, 473, 480, 527, 617
FalI	AAGNNNNNCTT	4 cut(s)	206, 238, 434, 466
FaqI	GGGAC	1 cut(s)	554
FatI	CATG	1 cut(s)	471
FblI	GTMKAC	1 cut(s)	115
Fnu4HI	GCNGC	5 cut(s)	311, 378, 405, 459, 620
FokI	GGATG	1 cut(s)	33
Fsp4HI	GCNGC	5 cut(s)	311, 378, 405, 459, 620
GluI	GCNGC	5 cut(s)	311, 378, 405, 459, 620
GsuI	CTGGAG	2 cut(s)	201, 255
HaeIII	GGCC	1 cut(s)	470
HapII	CCGG	1 cut(s)	510
Hin1II	CATG	1 cut(s)	475
HinfI	GANTC	1 cut(s)	22
HpaII	CCGG	1 cut(s)	510
HphI	GGTGA	1 cut(s)	449
Hpy166II	GTNNAC	1 cut(s)	116
Hpy188I	TCNGA	3 cut(s)	176, 256, 430
Hpy188III	TCNNGA	2 cut(s)	180, 583
Hpy8I	GTNNAC	1 cut(s)	116
HpyAV	CCTTC	1 cut(s)	372
HpyCH4III	ACNGT	3 cut(s)	197, 248, 532
HpyCH4V	TGCA	6 cut(s)	4, 236, 344, 407, 461, 475
HpyF10VI	GCNNNNNNNGC	3 cut(s)	341, 383, 467
HpyF3I	CTNAG	1 cut(s)	325
Hsp92II	CATG	1 cut(s)	475
Kzo9I	GATC	1 cut(s)	176
Lsp1109I	GCAGC	4 cut(s)	297, 391, 445, 606
LweI	GCATC	2 cut(s)	167, 223
MaeIII	GTNAC	1 cut(s)	437
MalI	GATC	1 cut(s)	178
MboI	GATC	1 cut(s)	176
MboII	GAAGA	3 cut(s)	17, 62, 203
MfeI	CAATTG	2 cut(s)	588, 605
MflI	RGATCY	1 cut(s)	176
MhlI	GDGCHC	1 cut(s)	517
MlsI	TGGCCA	1 cut(s)	470
MluCI	AATT	5 cut(s)	258, 432, 578, 588, 605
MluNI	TGGCCA	1 cut(s)	470
MnlI	CCTC	7 cut(s)	112, 120, 176, 193, 279, 300, 350
Mox20I	TGGCCA	1 cut(s)	470
MscI	TGGCCA	1 cut(s)	470
MseI	TTAA	2 cut(s)	107, 561
MslI	CAYNNNNRTG	1 cut(s)	109
Msp20I	TGGCCA	1 cut(s)	470
MspA1I	CMGCKG	1 cut(s)	404
MspI	CCGG	1 cut(s)	510
MspR9I	CCNGG	1 cut(s)	467
MunI	CAATTG	2 cut(s)	588, 605
Mva1269I	GAATGC	1 cut(s)	41
MvaI	CCWGG	1 cut(s)	467
MwoI	GCNNNNNNNGC	3 cut(s)	341, 383, 467
NdeII	GATC	1 cut(s)	176
NlaIII	CATG	1 cut(s)	475
NlaIV	GGNNCC	1 cut(s)	570
NmuCI	GTSAC	1 cut(s)	437
PctI	GAATGC	1 cut(s)	41
PfeI	GAWTC	1 cut(s)	22
PinAI	ACCGGT	1 cut(s)	509
PkrI	GCNGC	5 cut(s)	312, 379, 406, 460, 621
PpuMI	RGGWCCY	1 cut(s)	359
Psp5II	RGGWCCY	1 cut(s)	359
Psp6I	CCWGG	1 cut(s)	465
PspGI	CCWGG	1 cut(s)	465
PspN4I	GGNNCC	1 cut(s)	570
PspPI	GGNCC	3 cut(s)	129, 359, 568
PspPPI	RGGWCCY	1 cut(s)	359
PsuI	RGATCY	1 cut(s)	176
PvuII	CAGCTG	1 cut(s)	404
RsaI	GTAC	1 cut(s)	147
RsaNI	GTAC	1 cut(s)	146
RseI	CAYNNNNRTG	1 cut(s)	109
SaqAI	TTAA	2 cut(s)	107, 561
SatI	GCNGC	5 cut(s)	311, 378, 405, 459, 620
Sau3AI	GATC	1 cut(s)	176
Sau96I	GGNCC	3 cut(s)	129, 359, 568
ScrFI	CCNGG	1 cut(s)	467
SduI	GDGCHC	1 cut(s)	517
SetI	ASST	6 cut(s)	63, 80, 113, 131, 364, 406
SfaNI	GCATC	2 cut(s)	167, 223
SinI	GGWCC	3 cut(s)	129, 359, 568
SmiMI	CAYNNNNRTG	1 cut(s)	109
Sse9I	AATT	5 cut(s)	258, 432, 578, 588, 605
SsiI	CCGC	3 cut(s)	84, 132, 377
SspI	AATATT	2 cut(s)	420, 558
StyD4I	CCNGG	1 cut(s)	465
TaaI	ACNGT	3 cut(s)	197, 248, 532
TaqI	TCGA	1 cut(s)	125
TaqII	GACCGA	1 cut(s)	556
TasI	AATT	5 cut(s)	258, 432, 578, 588, 605
TatI	WGTACW	1 cut(s)	145
TauI	GCSGC	1 cut(s)	380
TfiI	GAWTC	1 cut(s)	22
Tru1I	TTAA	2 cut(s)	107, 561
Tru9I	TTAA	2 cut(s)	107, 561
TscAI	CASTG	3 cut(s)	202, 235, 495
TseFI	GTSAC	1 cut(s)	437
TseI	GCWGC	4 cut(s)	310, 404, 458, 619
Tsp45I	GTSAC	1 cut(s)	437
TspDTI	ATGAA	3 cut(s)	17, 204, 240
TspGWI	ACGGA	1 cut(s)	286
TspRI	CASTG	3 cut(s)	202, 235, 495
VpaK11BI	GGWCC	3 cut(s)	129, 359, 568
XagI	CCTNNNNNAGG	1 cut(s)	106
XmiI	GTMKAC	1 cut(s)	115

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.