Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0007177

Physical Location & Seq

Genomic Coordinates Forward (+)

22488591 .. 22492050

Gene Structure 3460 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1229400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

ATGAGGGAGTTCTGCTGCAATGGCTTGCTATTCACCTACTGGGTTCTGTTGGGTTCAACCGGTGCTCTTACACTTATGACAGTCCTGTCTGTCATTATTGGGCGAATATTTAACTCGGTCCCTGCTCAATTCCAGACAACCTTGCCAATTGGAGAATATGCTGCCGTAACTCTTCTGCTATTCTTTGGTCTCAAATCAATAAAAGATGCATGGGACCTGCCATCCAGTGATGTTAAAAATGGTGATAAAAGCAGCCCTGAGCTTGATGAATACACCGAAGCCGAGGAGCTTGTGAAAGAGAAGGTGTCAAAGCGGCTCACTAATCCATTTGAAATTGTCTGGAAATCATTCACCCTCGTATTTGTTGCCGAATGGGGAGATCGCTCAATGCTCGCCACAATCGCTCTTGGTGCTGCACAGTCTCCATGGGGTGTGGCAAGTGGAGCCACTGCTGGACACGTACTTGCGACATCTATCGCTGTTCTAGGAGGTGCATTTCTCGCCAATTACATTTCCGAAAAACTGGTTGGATATGTGGGAGGTGGGTTGTTTCTAGTTTTTGCGGTAGCCACATTTTTCGGAGTTTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009528 GO:0009536 GO:0009706 GO:0009941 GO:0016020 GO:0019866 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0042170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UPF0016

Protein Analysis

197

Amino Acids

21.09

Weight (kDa)

4.99

Isoelectric Point (pI)

23.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GDT1	PF01169	114 - 188	3.5e-24	Divalent cation/proton antiporter GDT1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007177)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13590 AT4G13590
fragaria_vesca	FvH4_4g05550 FvH4_4g05550 FvH4_4g05550 FvH4_4g05550
malus_domestica	MD13G1229100.v1.1 MD13G1229200.v1.1 MD13G1229400.v1.1 MD16G1235000.v1.1 MD16G1235100.v1.1
prunus_persica	Prupe.1G057500_v2.0.a1
pyrus_communis	pycom13g20220
rosa_chinensis	RchiOBHm_Chr4g0396661
rosa_laevigata	RLG00000009512
rosa_multiflora	Rmu_sc0006586.1_g000015 Rmu_sc0010969.1_g000009
rosa_roxburghii	Rroxscaffold_5G00341520
rosa_rugosa	Rorug03G0348200 Rorug03G0348200
rosa_samantha	Rh4AG071100 Rh4BG069100 Rh4CG076900 Rh4DG066300
rosa_wichuraiana	Rw4G005680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	85
Acc36I	ACCTGC	1 cut(s)	225
AciI	CCGC	2 cut(s)	313, 563
AfaI	GTAC	1 cut(s)	462
AflIII	ACRYGT	1 cut(s)	457
AgeI	ACCGGT	1 cut(s)	59
AgsI	TTSAA	2 cut(s)	57, 332
AjuI	GAANNNNNNNTTGG	2 cut(s)	510, 542
AluBI	AGCT	2 cut(s)	262, 289
AluI	AGCT	2 cut(s)	262, 289
Alw21I	GWGCWC	1 cut(s)	67
Alw26I	GTCTC	2 cut(s)	194, 426
ApeKI	GCWGC	4 cut(s)	15, 161, 252, 413
AsiGI	ACCGGT	1 cut(s)	59
Asp700I	GAANNNNTTC	1 cut(s)	347
AspS9I	GGNCC	2 cut(s)	118, 214
AsuHPI	GGTGA	3 cut(s)	25, 254, 343
AvaII	GGWCC	2 cut(s)	118, 214
Bbv12I	GWGCWC	1 cut(s)	67
BbvI	GCAGC	4 cut(s)	2, 148, 264, 400
BccI	CCATC	1 cut(s)	229
BceAI	ACGGC	1 cut(s)	149
BcoDI	GTCTC	2 cut(s)	194, 426
BfaI	CTAG	2 cut(s)	485, 554
BfuAI	ACCTGC	1 cut(s)	225
BisI	GCNGC	5 cut(s)	16, 162, 253, 314, 414
BlsI	GCNGC	5 cut(s)	17, 163, 254, 315, 415
Bme18I	GGWCC	2 cut(s)	118, 214
BmgT120I	GGNCC	2 cut(s)	118, 214
BmiI	GGNNCC	3 cut(s)	120, 215, 445
BmrI	ACTGGG	1 cut(s)	49
BmsI	GCATC	1 cut(s)	196
BmuI	ACTGGG	1 cut(s)	49
Bpu10I	CCTNAGC	1 cut(s)	258
BsaAI	YACGTR	1 cut(s)	460
BsaI	GGTCTC	1 cut(s)	194
BsaJI	CCNNGG	2 cut(s)	282, 425
BsaWI	WCCGGW	1 cut(s)	59
Bse118I	RCCGGY	1 cut(s)	59
Bse1I	ACTGG	3 cut(s)	44, 225, 528
Bse3DI	GCAATG	1 cut(s)	25
BseDI	CCNNGG	2 cut(s)	282, 425
BseGI	GGATG	1 cut(s)	221
BseMI	GCAATG	1 cut(s)	25
BseMII	CTCAG	1 cut(s)	249
BseNI	ACTGG	3 cut(s)	44, 225, 528
BseRI	GAGGAG	1 cut(s)	299
BseXI	GCAGC	4 cut(s)	2, 148, 264, 400
BsgI	GTGCAG	1 cut(s)	399
BshTI	ACCGGT	1 cut(s)	59
BsiHKAI	GWGCWC	1 cut(s)	67
BsiSI	CCGG	1 cut(s)	60
BslFI	GGGAC	2 cut(s)	104, 227
BsmAI	GTCTC	2 cut(s)	194, 426
BsmFI	GGGAC	2 cut(s)	104, 227
Bso31I	GGTCTC	1 cut(s)	194
Bsp1286I	GDGCHC	1 cut(s)	67
Bsp143I	GATC	1 cut(s)	379
Bsp19I	CCATGG	1 cut(s)	425
BspACI	CCGC	2 cut(s)	313, 563
BspCNI	CTCAG	1 cut(s)	250
BspLI	GGNNCC	3 cut(s)	120, 215, 445
BspMI	ACCTGC	1 cut(s)	225
BspTNI	GGTCTC	1 cut(s)	194
BsrDI	GCAATG	1 cut(s)	25
BsrFI	RCCGGY	1 cut(s)	59
BsrI	ACTGG	3 cut(s)	44, 225, 528
BssAI	RCCGGY	1 cut(s)	59
BssECI	CCNNGG	2 cut(s)	282, 425
BssMI	GATC	1 cut(s)	379
BssT1I	CCWWGG	1 cut(s)	425
Bst4CI	ACNGT	2 cut(s)	82, 420
Bst6I	CTCTTC	1 cut(s)	177
BstBAI	YACGTR	1 cut(s)	460
BstC8I	GCNNGC	2 cut(s)	26, 393
BstDEI	CTNAG	1 cut(s)	258
BstDSI	CCRYGG	1 cut(s)	425
BstF5I	GGATG	1 cut(s)	221
BstKTI	GATC	1 cut(s)	382
BstMAI	GTCTC	2 cut(s)	194, 426
BstMBI	GATC	1 cut(s)	379
BstMWI	GCNNNNNNNGC	5 cut(s)	21, 401, 410, 443, 500
BstV1I	GCAGC	4 cut(s)	2, 148, 264, 400
BtgI	CCRYGG	1 cut(s)	425
BtsCI	GGATG	1 cut(s)	221
BtsI	GCAGTG	1 cut(s)	447
BtsIMutI	CAGTG	2 cut(s)	232, 447
BveI	ACCTGC	1 cut(s)	225
Cac8I	GCNNGC	2 cut(s)	26, 393
Cfr10I	RCCGGY	1 cut(s)	59
Cfr13I	GGNCC	2 cut(s)	118, 214
Csp6I	GTAC	1 cut(s)	461
CspAI	ACCGGT	1 cut(s)	59
CviAII	CATG	2 cut(s)	210, 426
CviJI	RGCY	8 cut(s)	24, 255, 262, 281, 289, 316, 446, 569
CviKI_1	RGCY	8 cut(s)	24, 255, 262, 281, 289, 316, 446, 569
CviQI	GTAC	1 cut(s)	461
DdeI	CTNAG	1 cut(s)	258
DpnI	GATC	1 cut(s)	381
DpnII	GATC	1 cut(s)	379
DrdI	GACNNNNNNGTC	1 cut(s)	85
DseDI	GACNNNNNNGTC	1 cut(s)	85
Eam1104I	CTCTTC	1 cut(s)	177
EarI	CTCTTC	1 cut(s)	177
Eco130I	CCWWGG	1 cut(s)	425
Eco31I	GGTCTC	1 cut(s)	194
Eco47I	GGWCC	2 cut(s)	118, 214
EcoO109I	RGGNCCY	1 cut(s)	214
EcoT14I	CCWWGG	1 cut(s)	425
EcoT22I	ATGCAT	1 cut(s)	211
ErhI	CCWWGG	1 cut(s)	425
FaeI	CATG	2 cut(s)	213, 429
FaiI	YATR	5 cut(s)	77, 159, 211, 427, 534
FaqI	GGGAC	2 cut(s)	104, 227
FatI	CATG	2 cut(s)	209, 425
Fnu4HI	GCNGC	5 cut(s)	16, 162, 253, 314, 414
FokI	GGATG	1 cut(s)	208
Fsp4HI	GCNGC	5 cut(s)	16, 162, 253, 314, 414
FspBI	CTAG	2 cut(s)	485, 554
GluI	GCNGC	5 cut(s)	16, 162, 253, 314, 414
HapII	CCGG	1 cut(s)	60
Hin1II	CATG	2 cut(s)	213, 429
HpaII	CCGG	1 cut(s)	60
HphI	GGTGA	3 cut(s)	25, 254, 343
Hpy188I	TCNGA	3 cut(s)	517, 581, 590
Hpy188III	TCNNGA	2 cut(s)	133, 340
HpyAV	CCTTC	1 cut(s)	295
HpyCH4III	ACNGT	2 cut(s)	82, 420
HpyCH4IV	ACGT	1 cut(s)	459
HpyCH4V	TGCA	4 cut(s)	18, 209, 416, 494
HpyF10VI	GCNNNNNNNGC	5 cut(s)	21, 401, 410, 443, 500
HpyF3I	CTNAG	1 cut(s)	258
HpySE526I	ACGT	1 cut(s)	459
Hsp92II	CATG	2 cut(s)	213, 429
Kzo9I	GATC	1 cut(s)	379
LmnI	GCTCC	2 cut(s)	286, 443
Lsp1109I	GCAGC	4 cut(s)	2, 148, 264, 400
LweI	GCATC	1 cut(s)	196
MaeI	CTAG	2 cut(s)	485, 554
MaeII	ACGT	1 cut(s)	459
MaeIII	GTNAC	1 cut(s)	166
MalI	GATC	1 cut(s)	381
MboI	GATC	1 cut(s)	379
MboII	GAAGA	1 cut(s)	164
MfeI	CAATTG	1 cut(s)	147
MhlI	GDGCHC	1 cut(s)	67
MluCI	AATT	4 cut(s)	128, 147, 333, 505
MmeI	TCCRAC	1 cut(s)	508
MnlI	CCTC	4 cut(s)	277, 365, 482, 533
Mph1103I	ATGCAT	1 cut(s)	211
MroXI	GAANNNNTTC	1 cut(s)	347
MseI	TTAA	2 cut(s)	111, 234
MspI	CCGG	1 cut(s)	60
MunI	CAATTG	1 cut(s)	147
MwoI	GCNNNNNNNGC	5 cut(s)	21, 401, 410, 443, 500
NcoI	CCATGG	1 cut(s)	425
NdeII	GATC	1 cut(s)	379
NlaIII	CATG	2 cut(s)	213, 429
NlaIV	GGNNCC	3 cut(s)	120, 215, 445
NmeAIII	GCCGAG	1 cut(s)	307
NsiI	ATGCAT	1 cut(s)	211
PdmI	GAANNNNTTC	1 cut(s)	347
PinAI	ACCGGT	1 cut(s)	59
PkrI	GCNGC	5 cut(s)	17, 163, 254, 315, 415
Ppu21I	YACGTR	1 cut(s)	460
PpuMI	RGGWCCY	1 cut(s)	214
Psp5II	RGGWCCY	1 cut(s)	214
PspN4I	GGNNCC	3 cut(s)	120, 215, 445
PspPI	GGNCC	2 cut(s)	118, 214
PspPPI	RGGWCCY	1 cut(s)	214
RsaI	GTAC	1 cut(s)	462
RsaNI	GTAC	1 cut(s)	461
SaqAI	TTAA	2 cut(s)	111, 234
SatI	GCNGC	5 cut(s)	16, 162, 253, 314, 414
Sau3AI	GATC	1 cut(s)	379
Sau96I	GGNCC	2 cut(s)	118, 214
SduI	GDGCHC	1 cut(s)	67
SetI	ASST	9 cut(s)	38, 143, 219, 264, 291, 306, 462, 493, 544
SfaNI	GCATC	1 cut(s)	196
SinI	GGWCC	2 cut(s)	118, 214
Sse9I	AATT	4 cut(s)	128, 147, 333, 505
SsiI	CCGC	2 cut(s)	313, 563
SspI	AATATT	1 cut(s)	108
SspMI	CTAG	2 cut(s)	485, 554
StyI	CCWWGG	1 cut(s)	425
TaaI	ACNGT	2 cut(s)	82, 420
TaiI	ACGT	1 cut(s)	462
TaqII	GACCGA	1 cut(s)	106
TasI	AATT	4 cut(s)	128, 147, 333, 505
TauI	GCSGC	1 cut(s)	316
Tru1I	TTAA	2 cut(s)	111, 234
Tru9I	TTAA	2 cut(s)	111, 234
TscAI	CASTG	2 cut(s)	232, 454
TseI	GCWGC	4 cut(s)	15, 161, 252, 413
TspDTI	ATGAA	1 cut(s)	282
TspRI	CASTG	2 cut(s)	232, 454
VpaK11BI	GGWCC	2 cut(s)	118, 214
XmnI	GAANNNNTTC	1 cut(s)	347
XspI	CTAG	2 cut(s)	485, 554
Zsp2I	ATGCAT	1 cut(s)	211

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.