Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0007177

Physical Location & Seq

Genomic Coordinates Reverse (-)

11399773 .. 11404526

Gene Structure 4754 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G005680.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1065 bp

ATGGAGGGGTTGGTGCTTGTTCATACACCATTGACTCCTAGAAAGAAGCTTCCTTTGTTGGCTTTGGTGGATGCTCTACCATCTTATATCGCTCTTTCTAGAAAACCCATCACACCCTCAATAAGATATAGAGAGTTATCACGATTGGCGGGCAGCAAAGTCCGAGTCCAAGCATCTAATGTTAGTATTGGATCTGGAGGCTATGAAAGCGGGGAGGAAAATAAGAAGCAGAAAATTGTTTCCAGTGATGCAAACAACAACAGTTCATCAGAAGTGTTTGGCAGTGAGAAGCCTCCAATTCAAATCCCTTATCCTCTCTCTGTAGCTCTTGTTCTACTTGGGTGTGGCTTGCTGTTTTCTCTGATTGCCTTTGTGAGAGGAGGACCTTCAACAATTTTAGCAGCAATTGCAAAATCAGGCTTCACAGCTGCATTCTCTTTAATATTTGTTTCAGAAATTGGCGACAAGACATTCTTCATTGCTGCACTCTTGGCCATGCAATATGAGAAAGGACTGGTTCTGTTGGGGTCAATGGGTGCTCTTGCACTTATGACAATTCTGTCTGTCATTATTGGGCGTATATTTCATTCGGTGCCTGCTCAGTTCCAGACAACCTTGCCAATTGGAGAATATGCTGCCGTAACTCTTTTACTATTCTTTGGTCTCAAATCAATAAAAGATGCATGGGACCTTCCATCAAATGTTGTTGAGAGTGGTGATAAAAGCAGCCCTGGGCTTGATGAATATGCTGAAGCAGAGGAGCTTGTAAAACAGAAGGCATCAAGGCGGCTCACTAATCCACTCGCAATTATTTGGAAATCATTCAGCCTTGTATTTGTTGCTGAATGGGGAGATCGCTCAATGCTTGCGACAATCGCTCTGGGTGCTGCACAGTCTCCATGGGGTGTGGCGGGTGGAGCAATTGCTGGACACGCACTTGCTACTTTCATTGCCGTTCTAGGAGGTGCATTTCTTGCCAAATACATTTCTGAGAAACTGGTTGGCTACATTGGTGGTGCTCTGTTTCTAGTTTTTGCAGTAGCTACATTTTTTGGAGTTTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009528 GO:0009536 GO:0009706 GO:0009941 GO:0016020 GO:0019866 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0042170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UPF0016

Protein Analysis

354

Amino Acids

37.5

Weight (kDa)

9.14

Isoelectric Point (pI)

29.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GDT1	PF01169	143 - 221	9e-17	Divalent cation/proton antiporter GDT1
GDT1	PF01169	272 - 346	7.1e-24	Divalent cation/proton antiporter GDT1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007177)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13590 AT4G13590
fragaria_vesca	FvH4_4g05550 FvH4_4g05550 FvH4_4g05550 FvH4_4g05550
malus_domestica	MD13G1229100.v1.1 MD13G1229200.v1.1 MD13G1229400.v1.1 MD16G1235000.v1.1 MD16G1235100.v1.1
prunus_persica	Prupe.1G057500_v2.0.a1
pyrus_communis	pycom13g20220
rosa_chinensis	RchiOBHm_Chr4g0396661
rosa_laevigata	RLG00000009512
rosa_multiflora	Rmu_sc0006586.1_g000015 Rmu_sc0010969.1_g000009
rosa_roxburghii	Rroxscaffold_5G00341520
rosa_rugosa	Rorug03G0348200 Rorug03G0348200
rosa_samantha	Rh4AG071100 Rh4BG069100 Rh4CG076900 Rh4DG066300
rosa_wichuraiana	Rw4G005680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	559
AccB1I	GGYRCC	1 cut(s)	592
AciI	CCGC	4 cut(s)	149, 210, 787, 911
AclWI	GGATC	1 cut(s)	199
AcoI	YGGCCR	1 cut(s)	492
AcuI	CTGAAG	1 cut(s)	771
AgsI	TTSAA	2 cut(s)	302, 390
AjnI	CCWGG	1 cut(s)	730
AluBI	AGCT	5 cut(s)	49, 326, 428, 763, 1043
AluI	AGCT	5 cut(s)	49, 326, 428, 763, 1043
Alw21I	GWGCWC	2 cut(s)	541, 1021
Alw26I	GTCTC	2 cut(s)	668, 900
AlwI	GGATC	1 cut(s)	199
AoxI	GGCC	1 cut(s)	492
ApeKI	GCWGC	7 cut(s)	153, 401, 428, 482, 635, 726, 887
ArsI	GACNNNNNNTTYG	2 cut(s)	150, 182
Asp700I	GAANNNNTTC	1 cut(s)	821
AspS9I	GGNCC	2 cut(s)	383, 688
AsuHPI	GGTGA	1 cut(s)	728
AvaII	GGWCC	2 cut(s)	383, 688
BalI	TGGCCA	1 cut(s)	494
BanI	GGYRCC	1 cut(s)	592
Bbv12I	GWGCWC	2 cut(s)	541, 1021
BbvI	GCAGC	7 cut(s)	165, 413, 415, 469, 622, 738, 874
BccI	CCATC	3 cut(s)	88, 116, 703
BceAI	ACGGC	2 cut(s)	623, 938
BciT130I	CCWGG	1 cut(s)	732
BcoDI	GTCTC	2 cut(s)	668, 900
BfaI	CTAG	4 cut(s)	39, 99, 959, 1028
BfmI	CTRYAG	1 cut(s)	321
BisI	GCNGC	8 cut(s)	154, 402, 429, 483, 636, 727, 788, 888
BlsI	GCNGC	8 cut(s)	155, 403, 430, 484, 637, 728, 789, 889
Bme1390I	CCNGG	1 cut(s)	732
Bme18I	GGWCC	2 cut(s)	383, 688
BmgT120I	GGNCC	2 cut(s)	383, 688
BmiI	GGNNCC	2 cut(s)	594, 689
BmrFI	CCNGG	1 cut(s)	732
BmsI	GCATC	5 cut(s)	61, 182, 238, 670, 788
BpmI	CTGGAG	1 cut(s)	216
BsaI	GGTCTC	1 cut(s)	668
BsaJI	CCNNGG	3 cut(s)	730, 731, 899
Bse1I	ACTGG	3 cut(s)	243, 519, 1002
Bse3DI	GCAATG	2 cut(s)	477, 948
BseBI	CCWGG	1 cut(s)	732
BseDI	CCNNGG	3 cut(s)	730, 731, 899
BseGI	GGATG	1 cut(s)	76
BseMI	GCAATG	2 cut(s)	477, 948
BseMII	CTCAG	2 cut(s)	614, 981
BseNI	ACTGG	3 cut(s)	243, 519, 1002
BseRI	GAGGAG	2 cut(s)	393, 773
BseXI	GCAGC	7 cut(s)	165, 413, 415, 469, 622, 738, 874
BsgI	GTGCAG	2 cut(s)	468, 873
BshFI	GGCC	1 cut(s)	494
BshNI	GGYRCC	1 cut(s)	592
BsiHKAI	GWGCWC	2 cut(s)	541, 1021
BslFI	GGGAC	1 cut(s)	701
BsmAI	GTCTC	2 cut(s)	668, 900
BsmFI	GGGAC	1 cut(s)	701
BsmI	GAATGC	1 cut(s)	431
BsnI	GGCC	1 cut(s)	494
Bso31I	GGTCTC	1 cut(s)	668
Bsp1286I	GDGCHC	2 cut(s)	541, 1021
Bsp143I	GATC	2 cut(s)	191, 853
Bsp19I	CCATGG	1 cut(s)	899
BspACI	CCGC	4 cut(s)	149, 210, 787, 911
BspANI	GGCC	1 cut(s)	494
BspCNI	CTCAG	2 cut(s)	613, 982
BspLI	GGNNCC	2 cut(s)	594, 689
BspPI	GGATC	1 cut(s)	199
BspT107I	GGYRCC	1 cut(s)	592
BspTNI	GGTCTC	1 cut(s)	668
BsrDI	GCAATG	2 cut(s)	477, 948
BsrI	ACTGG	3 cut(s)	243, 519, 1002
BssECI	CCNNGG	3 cut(s)	730, 731, 899
BssMI	GATC	2 cut(s)	191, 853
BssT1I	CCWWGG	1 cut(s)	899
Bst2UI	CCWGG	1 cut(s)	732
Bst4CI	ACNGT	2 cut(s)	263, 894
BstAPI	GCANNNNNTGC	2 cut(s)	407, 974
BstC8I	GCNNGC	4 cut(s)	151, 350, 597, 867
BstDEI	CTNAG	2 cut(s)	600, 990
BstDSI	CCRYGG	1 cut(s)	899
BstF5I	GGATG	1 cut(s)	76
BstKTI	GATC	2 cut(s)	194, 856
BstMAI	GTCTC	2 cut(s)	668, 900
BstMBI	GATC	2 cut(s)	191, 853
BstMWI	GCNNNNNNNGC	8 cut(s)	207, 407, 491, 875, 884, 917, 932, 974
BstNI	CCWGG	1 cut(s)	732
BstSCI	CCNGG	1 cut(s)	730
BstSFI	CTRYAG	1 cut(s)	321
BstV1I	GCAGC	7 cut(s)	165, 413, 415, 469, 622, 738, 874
BstX2I	RGATCY	1 cut(s)	191
BstYI	RGATCY	1 cut(s)	191
BsuRI	GGCC	1 cut(s)	494
BtgI	CCRYGG	1 cut(s)	899
BtsCI	GGATG	1 cut(s)	76
BtsI	GCAGTG	1 cut(s)	289
BtsIMutI	CAGTG	2 cut(s)	250, 289
Cac8I	GCNNGC	4 cut(s)	151, 350, 597, 867
Cfr13I	GGNCC	2 cut(s)	383, 688
CviAII	CATG	3 cut(s)	496, 684, 900
DdeI	CTNAG	2 cut(s)	600, 990
DpnI	GATC	2 cut(s)	193, 855
DpnII	GATC	2 cut(s)	191, 853
DrdI	GACNNNNNNGTC	1 cut(s)	559
DseDI	GACNNNNNNGTC	1 cut(s)	559
EaeI	YGGCCR	1 cut(s)	492
Eco130I	CCWWGG	1 cut(s)	899
Eco31I	GGTCTC	1 cut(s)	668
Eco47I	GGWCC	2 cut(s)	383, 688
Eco57I	CTGAAG	1 cut(s)	771
EcoO109I	RGGNCCY	2 cut(s)	383, 688
EcoRII	CCWGG	1 cut(s)	730
EcoT14I	CCWWGG	1 cut(s)	899
EcoT22I	ATGCAT	1 cut(s)	685
ErhI	CCWWGG	1 cut(s)	899
FaeI	CATG	3 cut(s)	499, 687, 903
FalI	AAGNNNNNCTT	2 cut(s)	458, 490
FaqI	GGGAC	1 cut(s)	701
FatI	CATG	3 cut(s)	495, 683, 899
FauI	CCCGC	3 cut(s)	142, 203, 904
Fnu4HI	GCNGC	8 cut(s)	154, 402, 429, 483, 636, 727, 788, 888
FokI	GGATG	1 cut(s)	83
Fsp4HI	GCNGC	8 cut(s)	154, 402, 429, 483, 636, 727, 788, 888
FspBI	CTAG	4 cut(s)	39, 99, 959, 1028
GluI	GCNGC	8 cut(s)	154, 402, 429, 483, 636, 727, 788, 888
GsuI	CTGGAG	1 cut(s)	216
HaeIII	GGCC	1 cut(s)	494
Hin1II	CATG	3 cut(s)	499, 687, 903
HindIII	AAGCTT	1 cut(s)	47
HinfI	GANTC	2 cut(s)	34, 165
HphI	GGTGA	1 cut(s)	728
Hpy188I	TCNGA	6 cut(s)	164, 271, 363, 454, 991, 1064
Hpy188III	TCNNGA	4 cut(s)	99, 141, 195, 607
HpyAV	CCTTC	3 cut(s)	396, 701, 769
HpyCH4III	ACNGT	2 cut(s)	263, 894
HpyF10VI	GCNNNNNNNGC	8 cut(s)	207, 407, 491, 875, 884, 917, 932, 974
HpyF3I	CTNAG	2 cut(s)	600, 990
Hsp92II	CATG	3 cut(s)	499, 687, 903
Kzo9I	GATC	2 cut(s)	191, 853
LmnI	GCTCC	2 cut(s)	760, 917
Lsp1109I	GCAGC	7 cut(s)	165, 413, 415, 469, 622, 738, 874
LweI	GCATC	5 cut(s)	61, 182, 238, 670, 788
MaeI	CTAG	4 cut(s)	39, 99, 959, 1028
MaeIII	GTNAC	1 cut(s)	640
MalI	GATC	2 cut(s)	193, 855
MboI	GATC	2 cut(s)	191, 853
MboII	GAAGA	1 cut(s)	466
MfeI	CAATTG	3 cut(s)	405, 621, 921
MflI	RGATCY	1 cut(s)	191
MhlI	GDGCHC	2 cut(s)	541, 1021
MlsI	TGGCCA	1 cut(s)	494
MluCI	AATT	9 cut(s)	234, 297, 393, 405, 456, 555, 621, 807, 921
MluNI	TGGCCA	1 cut(s)	494
MlyI	GAGTC	2 cut(s)	28, 174
MnlI	CCTC	9 cut(s)	127, 191, 208, 303, 324, 371, 374, 751, 956
Mox20I	TGGCCA	1 cut(s)	494
Mph1103I	ATGCAT	1 cut(s)	685
MroXI	GAANNNNTTC	1 cut(s)	821
MscI	TGGCCA	1 cut(s)	494
MseI	TTAA	1 cut(s)	440
Msp20I	TGGCCA	1 cut(s)	494
MspA1I	CMGCKG	1 cut(s)	428
MspR9I	CCNGG	1 cut(s)	732
MunI	CAATTG	3 cut(s)	405, 621, 921
Mva1269I	GAATGC	1 cut(s)	431
MvaI	CCWGG	1 cut(s)	732
MwoI	GCNNNNNNNGC	8 cut(s)	207, 407, 491, 875, 884, 917, 932, 974
NcoI	CCATGG	1 cut(s)	899
NdeII	GATC	2 cut(s)	191, 853
NlaIII	CATG	3 cut(s)	499, 687, 903
NlaIV	GGNNCC	2 cut(s)	594, 689
NsiI	ATGCAT	1 cut(s)	685
PasI	CCCWGGG	1 cut(s)	731
PctI	GAATGC	1 cut(s)	431
PdmI	GAANNNNTTC	1 cut(s)	821
PkrI	GCNGC	8 cut(s)	155, 403, 430, 484, 637, 728, 789, 889
PleI	GAGTC	2 cut(s)	28, 173
PpsI	GAGTC	2 cut(s)	28, 173
PpuMI	RGGWCCY	2 cut(s)	383, 688
Psp5II	RGGWCCY	2 cut(s)	383, 688
Psp6I	CCWGG	1 cut(s)	730
PspGI	CCWGG	1 cut(s)	730
PspN4I	GGNNCC	2 cut(s)	594, 689
PspPI	GGNCC	2 cut(s)	383, 688
PspPPI	RGGWCCY	2 cut(s)	383, 688
PsrI	GAACNNNNNNTAC	2 cut(s)	315, 347
PsuI	RGATCY	1 cut(s)	191
PvuII	CAGCTG	1 cut(s)	428
SaqAI	TTAA	1 cut(s)	440
SatI	GCNGC	8 cut(s)	154, 402, 429, 483, 636, 727, 788, 888
Sau3AI	GATC	2 cut(s)	191, 853
Sau96I	GGNCC	2 cut(s)	383, 688
SchI	GAGTC	2 cut(s)	28, 174
ScrFI	CCNGG	1 cut(s)	732
SduI	GDGCHC	2 cut(s)	541, 1021
SetI	ASST	9 cut(s)	51, 328, 388, 430, 617, 693, 765, 967, 1045
SfaNI	GCATC	5 cut(s)	61, 182, 238, 670, 788
SfcI	CTRYAG	1 cut(s)	321
SinI	GGWCC	2 cut(s)	383, 688
Sse9I	AATT	9 cut(s)	234, 297, 393, 405, 456, 555, 621, 807, 921
SsiI	CCGC	4 cut(s)	149, 210, 787, 911
SspI	AATATT	1 cut(s)	444
SspMI	CTAG	4 cut(s)	39, 99, 959, 1028
StyD4I	CCNGG	1 cut(s)	730
StyI	CCWWGG	1 cut(s)	899
TaaI	ACNGT	2 cut(s)	263, 894
TasI	AATT	9 cut(s)	234, 297, 393, 405, 456, 555, 621, 807, 921
TauI	GCSGC	1 cut(s)	790
Tru1I	TTAA	1 cut(s)	440
Tru9I	TTAA	1 cut(s)	440
TscAI	CASTG	2 cut(s)	250, 289
TseI	GCWGC	7 cut(s)	153, 401, 428, 482, 635, 726, 887
TspDTI	ATGAA	7 cut(s)	11, 219, 255, 466, 575, 756, 937
TspRI	CASTG	2 cut(s)	250, 289
VpaK11BI	GGWCC	2 cut(s)	383, 688
XbaI	TCTAGA	1 cut(s)	98
XmnI	GAANNNNTTC	1 cut(s)	821
XspI	CTAG	4 cut(s)	39, 99, 959, 1028
Zsp2I	ATGCAT	1 cut(s)	685

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.