Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0007177

Physical Location & Seq

Genomic Coordinates Forward (+)

16238099 .. 16242993

Gene Structure 4895 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g20220.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1053 bp

ATGCAGGGATTGGGATTGGGATTGGGATTGGGGATTCTTCATACGCCATTGGCATTCAATCCAAGCAAGAAGCTGACAACTCTTCCAAGCTGTCCCGCCCCTTCCACAAAACCCTCATTGAGGTGTAGACAGATATCGAGGTCCGCCAGCAGAAAAGTACAAGTCCAAGCATCTAATGTTAGTATCGGATCTGGAGGCTATGAAGACAGTGAGGAAAACAAGAACAAGAAAATCTTTCCCAGTGATGTACCCAGTAATGGTTCATCTGAAATTGAGAAGCCTCCAGTTCAAATCCCTTATCCTCTCTCCGTGGGTCTTGTGCTGCTTAGGTGTGCTTTAGTTTTTGCTCTGATTGCATTTGTGAAAGGAGGACCTTCAACACTTTTAGCGGCAATCGCAAAATCAGGCTTCACAGCTGCATTTTCTCTAATATTTGTTTCTGAAATTGGTGACAAGACATTCTTTATTGCTGCACTCCTGGCCATGCAATATGACAAAGCACTGGTTCTGTTGGGTTCAACTGGTGCTCTTACACTTATGACAGTCCTGTCTGTCATTATTGGGCGAATATTTAACTCGGTCCCTGCACAATTCCAGACAACCTTGCCAATTGGAGAATATGCTGCTGTAACTCTTCTGCTATTCTTTGGTCTCAAATCAATAAAAGATGCATGGGACCTGCCATCCAATGATGTTAAAAGTGGTGATAAAAGCAGCCCTGAGCTTAATGAATACACCGAAGCTGAGGAGCTTGTGAAAGAGAAGGTGTCAAAGCGGCTCACTAATCCACTTGAAATTGTCTGGAAATCATTCACCCTTGTATTTGTTGCTGAATGGGGAGATCGCTCAATGCTCGCCACAATTGCTCTCGGTGCTGCACAGTCTCCATGGGGTGTGGCAAGTGGCGCCAGTGCTGGACACGTACTTGCGACATCTATTGCTGTTCTAGGAGGTGCATTTCTCGCCAATTACATTTCCGAAAAACTGGTTGGCTACGTGGGAGGTGGGTTGTTTCTAGTTTTTGCAGTAGCCACATTTTTCGGAGTTTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009528 GO:0009536 GO:0009706 GO:0009941 GO:0016020 GO:0019866 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0042170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UPF0016

Protein Analysis

351

Amino Acids

36.96

Weight (kDa)

8.84

Isoelectric Point (pI)

37.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GDT1	PF01169	139 - 217	4.6e-17	Divalent cation/proton antiporter GDT1
GDT1	PF01169	268 - 342	2.4e-23	Divalent cation/proton antiporter GDT1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007177)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13590 AT4G13590
fragaria_vesca	FvH4_4g05550 FvH4_4g05550 FvH4_4g05550 FvH4_4g05550
malus_domestica	MD13G1229100.v1.1 MD13G1229200.v1.1 MD13G1229400.v1.1 MD16G1235000.v1.1 MD16G1235100.v1.1
prunus_persica	Prupe.1G057500_v2.0.a1
pyrus_communis	pycom13g20220
rosa_chinensis	RchiOBHm_Chr4g0396661
rosa_laevigata	RLG00000009512
rosa_multiflora	Rmu_sc0006586.1_g000015 Rmu_sc0010969.1_g000009
rosa_roxburghii	Rroxscaffold_5G00341520
rosa_rugosa	Rorug03G0348200 Rorug03G0348200
rosa_samantha	Rh4AG071100 Rh4BG069100 Rh4CG076900 Rh4DG066300
rosa_wichuraiana	Rw4G005680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	547
Acc36I	ACCTGC	1 cut(s)	687
AccB1I	GGYRCC	1 cut(s)	905
AccI	GTMKAC	1 cut(s)	127
AciI	CCGC	4 cut(s)	96, 144, 389, 775
AclWI	GGATC	1 cut(s)	196
AcoI	YGGCCR	1 cut(s)	480
AcyI	GRCGYC	1 cut(s)	906
AfaI	GTAC	3 cut(s)	159, 249, 924
AfiI	CCNNNNNNNGG	2 cut(s)	120, 257
AflIII	ACRYGT	1 cut(s)	919
AgsI	TTSAA	5 cut(s)	58, 290, 378, 519, 794
AjnI	CCWGG	1 cut(s)	477
AjuI	GAANNNNNNNTTGG	2 cut(s)	972, 1004
AluBI	AGCT	6 cut(s)	73, 90, 416, 724, 743, 751
AluI	AGCT	6 cut(s)	73, 90, 416, 724, 743, 751
Alw21I	GWGCWC	1 cut(s)	529
Alw26I	GTCTC	2 cut(s)	656, 888
AlwI	GGATC	1 cut(s)	196
AoxI	GGCC	1 cut(s)	480
ApeKI	GCWGC	6 cut(s)	322, 416, 470, 623, 714, 875
Asp700I	GAANNNNTTC	1 cut(s)	809
AspLEI	GCGC	1 cut(s)	908
AspS9I	GGNCC	4 cut(s)	141, 371, 580, 676
AsuHPI	GGTGA	3 cut(s)	461, 716, 805
AvaII	GGWCC	4 cut(s)	141, 371, 580, 676
BalI	TGGCCA	1 cut(s)	482
BanI	GGYRCC	1 cut(s)	905
BbsI	GAAGAC	1 cut(s)	210
Bbv12I	GWGCWC	1 cut(s)	529
BbvCI	CCTCAGC	1 cut(s)	744
BbvI	GCAGC	6 cut(s)	309, 403, 457, 610, 726, 862
BccI	CCATC	1 cut(s)	691
BciT130I	CCWGG	1 cut(s)	479
BcoDI	GTCTC	2 cut(s)	656, 888
BfaI	CTAG	2 cut(s)	947, 1016
BfoI	RGCGCY	1 cut(s)	909
BfuAI	ACCTGC	1 cut(s)	687
BisI	GCNGC	8 cut(s)	323, 390, 417, 471, 624, 715, 776, 876
BlsI	GCNGC	8 cut(s)	324, 391, 418, 472, 625, 716, 777, 877
Bme1390I	CCNGG	1 cut(s)	479
Bme18I	GGWCC	4 cut(s)	141, 371, 580, 676
BmgT120I	GGNCC	4 cut(s)	141, 371, 580, 676
BmiI	GGNNCC	3 cut(s)	582, 677, 907
BmrFI	CCNGG	1 cut(s)	479
BmrI	ACTGGG	2 cut(s)	234, 246
BmsI	GCATC	2 cut(s)	179, 658
BmuI	ACTGGG	2 cut(s)	234, 246
BpiI	GAAGAC	1 cut(s)	210
BpmI	CTGGAG	2 cut(s)	213, 267
Bpu10I	CCTNAGC	3 cut(s)	326, 720, 744
BsaAI	YACGTR	2 cut(s)	922, 997
BsaHI	GRCGYC	1 cut(s)	906
BsaI	GGTCTC	1 cut(s)	656
BsaJI	CCNNGG	2 cut(s)	309, 887
Bsc4I	CCNNNNNNNGG	2 cut(s)	120, 257
Bse1I	ACTGG	7 cut(s)	240, 252, 284, 507, 526, 909, 990
BseBI	CCWGG	1 cut(s)	479
BseDI	CCNNGG	2 cut(s)	309, 887
BseGI	GGATG	1 cut(s)	683
BseLI	CCNNNNNNNGG	2 cut(s)	120, 257
BseMII	CTCAG	2 cut(s)	711, 735
BseNI	ACTGG	7 cut(s)	240, 252, 284, 507, 526, 909, 990
BseRI	GAGGAG	1 cut(s)	761
BseXI	GCAGC	6 cut(s)	309, 403, 457, 610, 726, 862
BsgI	GTGCAG	3 cut(s)	456, 570, 861
BshFI	GGCC	1 cut(s)	482
BshNI	GGYRCC	1 cut(s)	905
BsiHKAI	GWGCWC	1 cut(s)	529
BslFI	GGGAC	3 cut(s)	78, 566, 689
BslI	CCNNNNNNNGG	2 cut(s)	120, 257
BsmAI	GTCTC	2 cut(s)	656, 888
BsmFI	GGGAC	3 cut(s)	78, 566, 689
BsmI	GAATGC	1 cut(s)	53
BsnI	GGCC	1 cut(s)	482
Bso31I	GGTCTC	1 cut(s)	656
Bsp1286I	GDGCHC	1 cut(s)	529
Bsp143I	GATC	2 cut(s)	188, 841
Bsp19I	CCATGG	1 cut(s)	887
BspACI	CCGC	4 cut(s)	96, 144, 389, 775
BspANI	GGCC	1 cut(s)	482
BspCNI	CTCAG	2 cut(s)	712, 736
BspLI	GGNNCC	3 cut(s)	582, 677, 907
BspMI	ACCTGC	1 cut(s)	687
BspPI	GGATC	1 cut(s)	196
BspT107I	GGYRCC	1 cut(s)	905
BspTNI	GGTCTC	1 cut(s)	656
BsrI	ACTGG	7 cut(s)	240, 252, 284, 507, 526, 909, 990
BssECI	CCNNGG	2 cut(s)	309, 887
BssMI	GATC	2 cut(s)	188, 841
BssNI	GRCGYC	1 cut(s)	906
BssT1I	CCWWGG	1 cut(s)	887
Bst2UI	CCWGG	1 cut(s)	479
Bst4CI	ACNGT	3 cut(s)	209, 544, 882
Bst6I	CTCTTC	2 cut(s)	87, 639
BstACI	GRCGYC	1 cut(s)	906
BstBAI	YACGTR	2 cut(s)	922, 997
BstC8I	GCNNGC	2 cut(s)	148, 855
BstDEI	CTNAG	3 cut(s)	326, 720, 744
BstDSI	CCRYGG	2 cut(s)	309, 887
BstENI	CCTNNNNNAGG	1 cut(s)	118
BstF5I	GGATG	1 cut(s)	683
BstH2I	RGCGCY	1 cut(s)	909
BstHHI	GCGC	1 cut(s)	908
BstKTI	GATC	2 cut(s)	191, 844
BstMAI	GTCTC	2 cut(s)	656, 888
BstMBI	GATC	2 cut(s)	188, 841
BstMWI	GCNNNNNNNGC	7 cut(s)	353, 395, 479, 863, 872, 905, 962
BstNI	CCWGG	1 cut(s)	479
BstSCI	CCNGG	1 cut(s)	477
BstV1I	GCAGC	6 cut(s)	309, 403, 457, 610, 726, 862
BstV2I	GAAGAC	1 cut(s)	210
BstX2I	RGATCY	1 cut(s)	188
BstYI	RGATCY	1 cut(s)	188
BsuRI	GGCC	1 cut(s)	482
BtgI	CCRYGG	2 cut(s)	309, 887
BtsCI	GGATG	1 cut(s)	683
BtsIMutI	CAGTG	4 cut(s)	214, 247, 500, 916
BveI	ACCTGC	1 cut(s)	687
Cac8I	GCNNGC	2 cut(s)	148, 855
CfoI	GCGC	1 cut(s)	908
Cfr13I	GGNCC	4 cut(s)	141, 371, 580, 676
Csp6I	GTAC	3 cut(s)	158, 248, 923
CviAII	CATG	3 cut(s)	484, 672, 888
CviQI	GTAC	3 cut(s)	158, 248, 923
DdeI	CTNAG	3 cut(s)	326, 720, 744
DinI	GGCGCC	1 cut(s)	907
DpnI	GATC	2 cut(s)	190, 843
DpnII	GATC	2 cut(s)	188, 841
DrdI	GACNNNNNNGTC	1 cut(s)	547
DseDI	GACNNNNNNGTC	1 cut(s)	547
EaeI	YGGCCR	1 cut(s)	480
Eam1104I	CTCTTC	2 cut(s)	87, 639
EarI	CTCTTC	2 cut(s)	87, 639
EciI	GGCGGA	1 cut(s)	133
Eco130I	CCWWGG	1 cut(s)	887
Eco31I	GGTCTC	1 cut(s)	656
Eco32I	GATATC	1 cut(s)	135
Eco47I	GGWCC	4 cut(s)	141, 371, 580, 676
EcoNI	CCTNNNNNAGG	1 cut(s)	118
EcoO109I	RGGNCCY	2 cut(s)	371, 676
EcoRII	CCWGG	1 cut(s)	477
EcoRV	GATATC	1 cut(s)	135
EcoT14I	CCWWGG	1 cut(s)	887
EcoT22I	ATGCAT	1 cut(s)	673
EgeI	GGCGCC	1 cut(s)	907
EheI	GGCGCC	1 cut(s)	907
ErhI	CCWWGG	1 cut(s)	887
FaeI	CATG	3 cut(s)	487, 675, 891
FaiI	YATR	8 cut(s)	42, 201, 485, 492, 539, 621, 673, 889
FalI	AAGNNNNNCTT	4 cut(s)	218, 250, 446, 478
FaqI	GGGAC	3 cut(s)	78, 566, 689
FatI	CATG	3 cut(s)	483, 671, 887
FauI	CCCGC	1 cut(s)	103
FblI	GTMKAC	1 cut(s)	127
Fnu4HI	GCNGC	8 cut(s)	323, 390, 417, 471, 624, 715, 776, 876
FokI	GGATG	1 cut(s)	670
Fsp4HI	GCNGC	8 cut(s)	323, 390, 417, 471, 624, 715, 776, 876
FspBI	CTAG	2 cut(s)	947, 1016
GlaI	GCGC	1 cut(s)	907
GluI	GCNGC	8 cut(s)	323, 390, 417, 471, 624, 715, 776, 876
GsuI	CTGGAG	2 cut(s)	213, 267
HaeII	RGCGCY	1 cut(s)	909
HaeIII	GGCC	1 cut(s)	482
HhaI	GCGC	1 cut(s)	908
Hin1I	GRCGYC	1 cut(s)	906
Hin1II	CATG	3 cut(s)	487, 675, 891
Hin6I	GCGC	1 cut(s)	906
HinP1I	GCGC	1 cut(s)	906
HinfI	GANTC	1 cut(s)	34
HphI	GGTGA	3 cut(s)	461, 716, 805
Hpy166II	GTNNAC	1 cut(s)	128
Hpy188I	TCNGA	7 cut(s)	188, 268, 351, 442, 979, 1043, 1052
Hpy188III	TCNNGA	3 cut(s)	192, 595, 802
Hpy8I	GTNNAC	1 cut(s)	128
HpyAV	CCTTC	3 cut(s)	111, 384, 757
HpyCH4III	ACNGT	3 cut(s)	209, 544, 882
HpyCH4IV	ACGT	2 cut(s)	921, 996
HpyF10VI	GCNNNNNNNGC	7 cut(s)	353, 395, 479, 863, 872, 905, 962
HpyF3I	CTNAG	3 cut(s)	326, 720, 744
HpySE526I	ACGT	2 cut(s)	921, 996
Hsp92I	GRCGYC	1 cut(s)	906
Hsp92II	CATG	3 cut(s)	487, 675, 891
HspAI	GCGC	1 cut(s)	906
KasI	GGCGCC	1 cut(s)	905
Kzo9I	GATC	2 cut(s)	188, 841
LmnI	GCTCC	1 cut(s)	748
Lsp1109I	GCAGC	6 cut(s)	309, 403, 457, 610, 726, 862
LweI	GCATC	2 cut(s)	179, 658
MaeI	CTAG	2 cut(s)	947, 1016
MaeII	ACGT	2 cut(s)	921, 996
MaeIII	GTNAC	2 cut(s)	449, 628
MalI	GATC	2 cut(s)	190, 843
MboI	GATC	2 cut(s)	188, 841
MboII	GAAGA	4 cut(s)	29, 74, 215, 626
MfeI	CAATTG	2 cut(s)	609, 861
MflI	RGATCY	1 cut(s)	188
MhlI	GDGCHC	1 cut(s)	529
MlsI	TGGCCA	1 cut(s)	482
MluCI	AATT	7 cut(s)	270, 444, 590, 609, 795, 861, 967
MluNI	TGGCCA	1 cut(s)	482
Mly113I	GGCGCC	1 cut(s)	906
Mox20I	TGGCCA	1 cut(s)	482
Mph1103I	ATGCAT	1 cut(s)	673
MroXI	GAANNNNTTC	1 cut(s)	809
MscI	TGGCCA	1 cut(s)	482
MseI	TTAA	3 cut(s)	573, 696, 726
MslI	CAYNNNNRTG	1 cut(s)	121
Msp20I	TGGCCA	1 cut(s)	482
MspA1I	CMGCKG	1 cut(s)	416
MspR9I	CCNGG	1 cut(s)	479
MunI	CAATTG	2 cut(s)	609, 861
Mva1269I	GAATGC	1 cut(s)	53
MvaI	CCWGG	1 cut(s)	479
MwoI	GCNNNNNNNGC	7 cut(s)	353, 395, 479, 863, 872, 905, 962
NarI	GGCGCC	1 cut(s)	906
NcoI	CCATGG	1 cut(s)	887
NdeII	GATC	2 cut(s)	188, 841
NlaIII	CATG	3 cut(s)	487, 675, 891
NlaIV	GGNNCC	3 cut(s)	582, 677, 907
NmuCI	GTSAC	1 cut(s)	449
NsiI	ATGCAT	1 cut(s)	673
PctI	GAATGC	1 cut(s)	53
PdmI	GAANNNNTTC	1 cut(s)	809
PfeI	GAWTC	1 cut(s)	34
PkrI	GCNGC	8 cut(s)	324, 391, 418, 472, 625, 716, 777, 877
PluTI	GGCGCC	1 cut(s)	909
Ppu21I	YACGTR	2 cut(s)	922, 997
PpuMI	RGGWCCY	2 cut(s)	371, 676
Psp5II	RGGWCCY	2 cut(s)	371, 676
Psp6I	CCWGG	1 cut(s)	477
PspGI	CCWGG	1 cut(s)	477
PspN4I	GGNNCC	3 cut(s)	582, 677, 907
PspPI	GGNCC	4 cut(s)	141, 371, 580, 676
PspPPI	RGGWCCY	2 cut(s)	371, 676
PsuI	RGATCY	1 cut(s)	188
PvuII	CAGCTG	1 cut(s)	416
RsaI	GTAC	3 cut(s)	159, 249, 924
RsaNI	GTAC	3 cut(s)	158, 248, 923
RseI	CAYNNNNRTG	1 cut(s)	121
SaqAI	TTAA	3 cut(s)	573, 696, 726
SatI	GCNGC	8 cut(s)	323, 390, 417, 471, 624, 715, 776, 876
Sau3AI	GATC	2 cut(s)	188, 841
Sau96I	GGNCC	4 cut(s)	141, 371, 580, 676
ScrFI	CCNGG	1 cut(s)	479
SduI	GDGCHC	1 cut(s)	529
SfaNI	GCATC	2 cut(s)	179, 658
SfoI	GGCGCC	1 cut(s)	907
SinI	GGWCC	4 cut(s)	141, 371, 580, 676
SmiMI	CAYNNNNRTG	1 cut(s)	121
Sse9I	AATT	7 cut(s)	270, 444, 590, 609, 795, 861, 967
SsiI	CCGC	4 cut(s)	96, 144, 389, 775
SspDI	GGCGCC	1 cut(s)	905
SspI	AATATT	2 cut(s)	432, 570
SspMI	CTAG	2 cut(s)	947, 1016
StyD4I	CCNGG	1 cut(s)	477
StyI	CCWWGG	1 cut(s)	887
TaaI	ACNGT	3 cut(s)	209, 544, 882
TaiI	ACGT	2 cut(s)	924, 999
TaqI	TCGA	1 cut(s)	137
TaqII	GACCGA	1 cut(s)	568
TasI	AATT	7 cut(s)	270, 444, 590, 609, 795, 861, 967
TatI	WGTACW	1 cut(s)	157
TauI	GCSGC	2 cut(s)	392, 778
TfiI	GAWTC	1 cut(s)	34
Tru1I	TTAA	3 cut(s)	573, 696, 726
Tru9I	TTAA	3 cut(s)	573, 696, 726
TscAI	CASTG	4 cut(s)	214, 247, 507, 916
TseFI	GTSAC	1 cut(s)	449
TseI	GCWGC	6 cut(s)	322, 416, 470, 623, 714, 875
Tsp45I	GTSAC	1 cut(s)	449
TspDTI	ATGAA	4 cut(s)	29, 216, 252, 744
TspGWI	ACGGA	1 cut(s)	298
TspRI	CASTG	4 cut(s)	214, 247, 507, 916
VpaK11BI	GGWCC	4 cut(s)	141, 371, 580, 676
XagI	CCTNNNNNAGG	1 cut(s)	118
XmiI	GTMKAC	1 cut(s)	127
XmnI	GAANNNNTTC	1 cut(s)	809
XspI	CTAG	2 cut(s)	947, 1016
Zsp2I	ATGCAT	1 cut(s)	673

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.