Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0007177

Physical Location & Seq

Genomic Coordinates Forward (+)

53803388 .. 53808095

Gene Structure 4708 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000009512

Sequence Viewer

CDS Protein Promoter (2k)

Length: 960 bp

ATGGAGGGGTTGGTGCTTGTTCACACACCATTGATTCCCAGAAAGAAGCTTCCTCTGTTAGCTTTGGTGGATTCTCTACCATCTTGTACCACTCTTTCTAGAAAGCCCATCACACCCTCAATAAGATATAGAGAGTTATCACGATTGGCGGGCAGCAAAGTCCGAGTCCAAGCATCTAATGTTAGTATTGGATCTGGAAGCTATGAAGGCGGGGAGGAAAATAAGAAGCAGAAAATTATTTCCGGTGATGCAAACAACAACAGTTCATCGGAAATGTTTGGCAGTGAGAAGCCTCCAATTCAAATCCCTTATCCTCTGTCTGTAGCTCTTGTTCTACTTGGTTGTGGCTTACTGTTTTCTCTGATTGCCTTTGTGAGAGGAGGACCTTCAACAATTTTAGCAGCAATTGCAAAATCAGGCTTCACAGCTGCATTCTCTTTAATATTTGTTTCAGAAATTGGCGACAAGACATTCTTCATTGCTGGACTCTTGGCCATGCAATATGAGAAAGGACTGGTTCTGTTGGGGTCAATGGGTGCTCTTGCACTTATGACAATTCTGTCTGTCATTATTGGGCGTGTATTTCATTCAGTGCCTGCTCAGTTCCAGACAACCTTGCCAATTGGAGAATATGCTGCTGTAACTCTTTTACTATTCTTTGGTCTCAAATCAATAAAAGATGCATGGGACCTTCCATCAAATCTTGTTGAGAGTGGTGATAAAAGCAGCCCTGAGCTTGATGAATATGCGGAAGCAGAGGAGCTTGTAAAACAGAAGGCATCAAGGCAGCTCACTAATCCACTTGCAATTATTTGGAAATCATTCAGCCTTGTATTTGTTGCTGAATGGGGAGATCGCTCAATGCTTGCAACAATCGCTCTGGGTGCTGCACAGGTGCAACCTTTTTTAGTTTCAATCAGCGCATATATCTTTCTTCCAAGTTTTATTATCTCTTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009528 GO:0009536 GO:0009706 GO:0009941 GO:0016020 GO:0019866 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0042170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UPF0016

Protein Analysis

320

Amino Acids

34.33

Weight (kDa)

8.43

Isoelectric Point (pI)

31.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GDT1	PF01169	143 - 221	3.7e-16	Divalent cation/proton antiporter GDT1
GDT1	PF01169	272 - 308	2.5e-08	Divalent cation/proton antiporter GDT1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007177)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13590 AT4G13590
fragaria_vesca	FvH4_4g05550 FvH4_4g05550 FvH4_4g05550 FvH4_4g05550
malus_domestica	MD13G1229100.v1.1 MD13G1229200.v1.1 MD13G1229400.v1.1 MD16G1235000.v1.1 MD16G1235100.v1.1
prunus_persica	Prupe.1G057500_v2.0.a1
pyrus_communis	pycom13g20220
rosa_chinensis	RchiOBHm_Chr4g0396661
rosa_laevigata	RLG00000009512
rosa_multiflora	Rmu_sc0006586.1_g000015 Rmu_sc0010969.1_g000009
rosa_roxburghii	Rroxscaffold_5G00341520
rosa_rugosa	Rorug03G0348200 Rorug03G0348200
rosa_samantha	Rh4AG071100 Rh4BG069100 Rh4CG076900 Rh4DG066300
rosa_wichuraiana	Rw4G005680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	559
AciI	CCGC	3 cut(s)	149, 210, 749
AclWI	GGATC	1 cut(s)	199
AcoI	YGGCCR	1 cut(s)	492
AfaI	GTAC	1 cut(s)	88
AgsI	TTSAA	3 cut(s)	302, 390, 915
AluBI	AGCT	8 cut(s)	49, 62, 201, 326, 428, 736, 763, 790
AluI	AGCT	8 cut(s)	49, 62, 201, 326, 428, 736, 763, 790
Alw21I	GWGCWC	1 cut(s)	541
Alw26I	GTCTC	1 cut(s)	668
AlwI	GGATC	1 cut(s)	199
AlwNI	CAGNNNCTG	1 cut(s)	596
AoxI	GGCC	1 cut(s)	492
ApeKI	GCWGC	7 cut(s)	153, 401, 428, 635, 726, 787, 887
ArsI	GACNNNNNNTTYG	2 cut(s)	150, 182
Asp700I	GAANNNNTTC	1 cut(s)	821
AspLEI	GCGC	1 cut(s)	923
AspS9I	GGNCC	2 cut(s)	383, 688
AsuHPI	GGTGA	2 cut(s)	257, 728
AvaII	GGWCC	2 cut(s)	383, 688
BalI	TGGCCA	1 cut(s)	494
Bbv12I	GWGCWC	1 cut(s)	541
BbvI	GCAGC	7 cut(s)	165, 413, 415, 622, 738, 799, 874
BccI	CCATC	3 cut(s)	88, 116, 703
BcoDI	GTCTC	1 cut(s)	668
BfaI	CTAG	1 cut(s)	99
BfmI	CTRYAG	1 cut(s)	321
BisI	GCNGC	7 cut(s)	154, 402, 429, 636, 727, 788, 888
BlsI	GCNGC	7 cut(s)	155, 403, 430, 637, 728, 789, 889
Bme18I	GGWCC	2 cut(s)	383, 688
BmgT120I	GGNCC	2 cut(s)	383, 688
BmiI	GGNNCC	1 cut(s)	689
BmsI	GCATC	4 cut(s)	182, 238, 670, 788
Bpu10I	CCTNAGC	1 cut(s)	732
BsaI	GGTCTC	1 cut(s)	668
BsaWI	WCCGGW	1 cut(s)	242
Bse1I	ACTGG	1 cut(s)	519
Bse3DI	GCAATG	1 cut(s)	477
BseMI	GCAATG	1 cut(s)	477
BseMII	CTCAG	2 cut(s)	614, 723
BseNI	ACTGG	1 cut(s)	519
BseRI	GAGGAG	2 cut(s)	393, 773
BseXI	GCAGC	7 cut(s)	165, 413, 415, 622, 738, 799, 874
BsgI	GTGCAG	1 cut(s)	873
BshFI	GGCC	1 cut(s)	494
BsiHKAI	GWGCWC	1 cut(s)	541
BsiSI	CCGG	1 cut(s)	243
BslFI	GGGAC	1 cut(s)	701
BsmAI	GTCTC	1 cut(s)	668
BsmFI	GGGAC	1 cut(s)	701
BsmI	GAATGC	1 cut(s)	431
BsnI	GGCC	1 cut(s)	494
Bso31I	GGTCTC	1 cut(s)	668
Bsp1286I	GDGCHC	1 cut(s)	541
Bsp143I	GATC	2 cut(s)	191, 853
BspACI	CCGC	3 cut(s)	149, 210, 749
BspANI	GGCC	1 cut(s)	494
BspCNI	CTCAG	2 cut(s)	613, 724
BspLI	GGNNCC	1 cut(s)	689
BspPI	GGATC	1 cut(s)	199
BspTNI	GGTCTC	1 cut(s)	668
BsrDI	GCAATG	1 cut(s)	477
BsrI	ACTGG	1 cut(s)	519
BssMI	GATC	2 cut(s)	191, 853
Bst4CI	ACNGT	2 cut(s)	263, 354
BstAPI	GCANNNNNTGC	1 cut(s)	407
BstC8I	GCNNGC	3 cut(s)	151, 597, 867
BstDEI	CTNAG	2 cut(s)	600, 732
BstHHI	GCGC	1 cut(s)	923
BstKTI	GATC	2 cut(s)	194, 856
BstMAI	GTCTC	1 cut(s)	668
BstMBI	GATC	2 cut(s)	191, 853
BstMWI	GCNNNNNNNGC	4 cut(s)	207, 407, 875, 884
BstSFI	CTRYAG	1 cut(s)	321
BstV1I	GCAGC	7 cut(s)	165, 413, 415, 622, 738, 799, 874
BstX2I	RGATCY	1 cut(s)	191
BstYI	RGATCY	1 cut(s)	191
BsuRI	GGCC	1 cut(s)	494
BtsI	GCAGTG	1 cut(s)	289
BtsIMutI	CAGTG	2 cut(s)	289, 597
Cac8I	GCNNGC	3 cut(s)	151, 597, 867
CaiI	CAGNNNCTG	1 cut(s)	596
CfoI	GCGC	1 cut(s)	923
Cfr13I	GGNCC	2 cut(s)	383, 688
Csp6I	GTAC	1 cut(s)	87
CviAII	CATG	2 cut(s)	496, 684
CviQI	GTAC	1 cut(s)	87
DdeI	CTNAG	2 cut(s)	600, 732
DpnI	GATC	2 cut(s)	193, 855
DpnII	GATC	2 cut(s)	191, 853
DrdI	GACNNNNNNGTC	1 cut(s)	559
DseDI	GACNNNNNNGTC	1 cut(s)	559
EaeI	YGGCCR	1 cut(s)	492
Eco31I	GGTCTC	1 cut(s)	668
Eco47I	GGWCC	2 cut(s)	383, 688
EcoO109I	RGGNCCY	2 cut(s)	383, 688
EcoT22I	ATGCAT	1 cut(s)	685
FaeI	CATG	2 cut(s)	499, 687
FalI	AAGNNNNNCTT	2 cut(s)	458, 490
FaqI	GGGAC	1 cut(s)	701
FatI	CATG	2 cut(s)	495, 683
FauI	CCCGC	2 cut(s)	142, 203
Fnu4HI	GCNGC	7 cut(s)	154, 402, 429, 636, 727, 788, 888
Fsp4HI	GCNGC	7 cut(s)	154, 402, 429, 636, 727, 788, 888
FspBI	CTAG	1 cut(s)	99
GlaI	GCGC	1 cut(s)	922
GluI	GCNGC	7 cut(s)	154, 402, 429, 636, 727, 788, 888
HaeIII	GGCC	1 cut(s)	494
HapII	CCGG	1 cut(s)	243
HhaI	GCGC	1 cut(s)	923
Hin1II	CATG	2 cut(s)	499, 687
Hin6I	GCGC	1 cut(s)	921
HinP1I	GCGC	1 cut(s)	921
HindIII	AAGCTT	1 cut(s)	47
HinfI	GANTC	4 cut(s)	34, 71, 165, 486
HpaII	CCGG	1 cut(s)	243
HphI	GGTGA	2 cut(s)	257, 728
Hpy166II	GTNNAC	1 cut(s)	22
Hpy188I	TCNGA	4 cut(s)	164, 271, 363, 454
Hpy188III	TCNNGA	4 cut(s)	99, 141, 195, 607
Hpy8I	GTNNAC	1 cut(s)	22
HpyAV	CCTTC	4 cut(s)	200, 396, 701, 769
HpyCH4III	ACNGT	2 cut(s)	263, 354
HpyF10VI	GCNNNNNNNGC	4 cut(s)	207, 407, 875, 884
HpyF3I	CTNAG	2 cut(s)	600, 732
Hsp92II	CATG	2 cut(s)	499, 687
HspAI	GCGC	1 cut(s)	921
Kzo9I	GATC	2 cut(s)	191, 853
LmnI	GCTCC	1 cut(s)	760
Lsp1109I	GCAGC	7 cut(s)	165, 413, 415, 622, 738, 799, 874
LweI	GCATC	4 cut(s)	182, 238, 670, 788
MaeI	CTAG	1 cut(s)	99
MaeIII	GTNAC	1 cut(s)	640
MalI	GATC	2 cut(s)	193, 855
MboI	GATC	2 cut(s)	191, 853
MboII	GAAGA	2 cut(s)	466, 926
MfeI	CAATTG	2 cut(s)	405, 621
MflI	RGATCY	1 cut(s)	191
MhlI	GDGCHC	1 cut(s)	541
MlsI	TGGCCA	1 cut(s)	494
MluCI	AATT	8 cut(s)	234, 297, 393, 405, 456, 555, 621, 807
MluNI	TGGCCA	1 cut(s)	494
MlyI	GAGTC	2 cut(s)	174, 480
MnlI	CCTC	8 cut(s)	63, 127, 208, 303, 324, 371, 374, 751
Mox20I	TGGCCA	1 cut(s)	494
Mph1103I	ATGCAT	1 cut(s)	685
MroXI	GAANNNNTTC	1 cut(s)	821
MscI	TGGCCA	1 cut(s)	494
MseI	TTAA	1 cut(s)	440
Msp20I	TGGCCA	1 cut(s)	494
MspA1I	CMGCKG	1 cut(s)	428
MspI	CCGG	1 cut(s)	243
MunI	CAATTG	2 cut(s)	405, 621
Mva1269I	GAATGC	1 cut(s)	431
MwoI	GCNNNNNNNGC	4 cut(s)	207, 407, 875, 884
NdeII	GATC	2 cut(s)	191, 853
NlaIII	CATG	2 cut(s)	499, 687
NlaIV	GGNNCC	1 cut(s)	689
NsiI	ATGCAT	1 cut(s)	685
PctI	GAATGC	1 cut(s)	431
PdmI	GAANNNNTTC	1 cut(s)	821
PfeI	GAWTC	2 cut(s)	34, 71
PkrI	GCNGC	7 cut(s)	155, 403, 430, 637, 728, 789, 889
PleI	GAGTC	2 cut(s)	173, 480
PpsI	GAGTC	2 cut(s)	173, 480
PpuMI	RGGWCCY	2 cut(s)	383, 688
Psp5II	RGGWCCY	2 cut(s)	383, 688
PspN4I	GGNNCC	1 cut(s)	689
PspPI	GGNCC	2 cut(s)	383, 688
PspPPI	RGGWCCY	2 cut(s)	383, 688
PsrI	GAACNNNNNNTAC	2 cut(s)	315, 347
PstNI	CAGNNNCTG	1 cut(s)	596
PsuI	RGATCY	1 cut(s)	191
PvuII	CAGCTG	1 cut(s)	428
RsaI	GTAC	1 cut(s)	88
RsaNI	GTAC	1 cut(s)	87
SaqAI	TTAA	1 cut(s)	440
SatI	GCNGC	7 cut(s)	154, 402, 429, 636, 727, 788, 888
Sau3AI	GATC	2 cut(s)	191, 853
Sau96I	GGNCC	2 cut(s)	383, 688
SchI	GAGTC	2 cut(s)	174, 480
SduI	GDGCHC	1 cut(s)	541
SfaNI	GCATC	4 cut(s)	182, 238, 670, 788
SfcI	CTRYAG	1 cut(s)	321
SinI	GGWCC	2 cut(s)	383, 688
Sse9I	AATT	8 cut(s)	234, 297, 393, 405, 456, 555, 621, 807
SsiI	CCGC	3 cut(s)	149, 210, 749
SspI	AATATT	1 cut(s)	444
SspMI	CTAG	1 cut(s)	99
TaaI	ACNGT	2 cut(s)	263, 354
TasI	AATT	8 cut(s)	234, 297, 393, 405, 456, 555, 621, 807
TfiI	GAWTC	2 cut(s)	34, 71
Tru1I	TTAA	1 cut(s)	440
Tru9I	TTAA	1 cut(s)	440
TscAI	CASTG	2 cut(s)	289, 597
TseI	GCWGC	7 cut(s)	153, 401, 428, 635, 726, 787, 887
TspDTI	ATGAA	5 cut(s)	219, 255, 466, 575, 756
TspRI	CASTG	2 cut(s)	289, 597
VpaK11BI	GGWCC	2 cut(s)	383, 688
XbaI	TCTAGA	1 cut(s)	98
XmnI	GAANNNNTTC	1 cut(s)	821
XspI	CTAG	1 cut(s)	99
Zsp2I	ATGCAT	1 cut(s)	685

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.