Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0007177

Physical Location & Seq

Genomic Coordinates Reverse (-)

14620675 .. 14625312

Gene Structure 4638 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG071100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

ATGGATAATAGTCCATACAGGCTTCCTTCACTGTACTCATGTACAATACTTTCTAGGTTTGGCAGTGAGAAGCCTCCAATTCAAATCCCTTATCCTCTCTCTGTAGCTCTTGTTCTACTTGGGTGTGGCTTGCTGTTTTCTCTGATTGCCTTTGTGAGAGGAGGACCTTCAACAATTTTAGCAGCAATTGCAAAATCAGGCTTCACAGCTGCATTCTCTTTAATATTTGTTTCAGAAATTGGCGACAAGACATTCTTCATTGCTGCACTCTTGGCCATGCAATATGAGAAAGGACTGGTTCTGTTGGGGTCAATGGGTGCTCTTGCACTTATGACAATTCTGTCTGTCATTATTGGGCGTATATTTCATTCGGTGCCTGCTCAGTTCCAGACAACCTTGCCAATTGGAGAATATGCTGCCGTAACTCTTTTACTATTCTTTGGTCTCAAATCAATAAAAGATGCATGGGACCTTCCATCAAATGTTGTTGAGAGTGGTGATAAAAGCAGCCCTGGGCTTGATGAATATGCTGAAGCAGAGGAGCTTGTAAAACAGAAGGCATCAAGGCGGCTCACTAATCCACTTGCAATTATTTGGAAATCATTCAGCCTTGTATTTGTTGCTGTAAGTATATATTCTTTGGACTTATCTGTAGCAACGTGTGGCATGCTTACATGTCCTTGGGTATTATTATTTCCAGACATGTTTGACATTAAGGGGAAAAAAAGTTTTATAAAAAAAAAATTCTCCATGACCTGCAACCTGATCTCAGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009528 GO:0009536 GO:0009706 GO:0009941 GO:0016020 GO:0019866 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0042170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UPF0016

Protein Analysis

258

Amino Acids

28.01

Weight (kDa)

8.75

Isoelectric Point (pI)

31.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GDT1	PF01169	70 - 148	5.2e-17	Divalent cation/proton antiporter GDT1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007177)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13590 AT4G13590
fragaria_vesca	FvH4_4g05550 FvH4_4g05550 FvH4_4g05550 FvH4_4g05550
malus_domestica	MD13G1229100.v1.1 MD13G1229200.v1.1 MD13G1229400.v1.1 MD16G1235000.v1.1 MD16G1235100.v1.1
prunus_persica	Prupe.1G057500_v2.0.a1
pyrus_communis	pycom13g20220
rosa_chinensis	RchiOBHm_Chr4g0396661
rosa_laevigata	RLG00000009512
rosa_multiflora	Rmu_sc0006586.1_g000015 Rmu_sc0010969.1_g000009
rosa_roxburghii	Rroxscaffold_5G00341520
rosa_rugosa	Rorug03G0348200 Rorug03G0348200
rosa_samantha	Rh4AG071100 Rh4BG069100 Rh4CG076900 Rh4DG066300
rosa_wichuraiana	Rw4G005680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	734
AasI	GACNNNNNNGTC	1 cut(s)	340
Acc36I	ACCTGC	1 cut(s)	764
AccB1I	GGYRCC	1 cut(s)	373
AciI	CCGC	1 cut(s)	568
AcoI	YGGCCR	1 cut(s)	273
AcsI	RAATTY	1 cut(s)	743
AcuI	CTGAAG	1 cut(s)	552
AfaI	GTAC	2 cut(s)	35, 43
AflIII	ACRYGT	3 cut(s)	659, 674, 702
AgsI	TTSAA	2 cut(s)	83, 171
AjnI	CCWGG	1 cut(s)	511
AluBI	AGCT	3 cut(s)	107, 209, 544
AluI	AGCT	3 cut(s)	107, 209, 544
Alw21I	GWGCWC	1 cut(s)	322
Alw26I	GTCTC	1 cut(s)	449
AoxI	GGCC	1 cut(s)	273
ApeKI	GCWGC	5 cut(s)	182, 209, 263, 416, 507
ApoI	RAATTY	1 cut(s)	743
Asp700I	GAANNNNTTC	1 cut(s)	602
AspS9I	GGNCC	2 cut(s)	164, 469
AsuHPI	GGTGA	1 cut(s)	509
AvaII	GGWCC	2 cut(s)	164, 469
BalI	TGGCCA	1 cut(s)	275
BanI	GGYRCC	1 cut(s)	373
Bbv12I	GWGCWC	1 cut(s)	322
BbvI	GCAGC	5 cut(s)	194, 196, 250, 403, 519
BccI	CCATC	1 cut(s)	484
BceAI	ACGGC	1 cut(s)	404
BciT130I	CCWGG	1 cut(s)	513
BcoDI	GTCTC	1 cut(s)	449
BfaI	CTAG	1 cut(s)	54
BfmI	CTRYAG	2 cut(s)	102, 651
BfuAI	ACCTGC	1 cut(s)	764
BisI	GCNGC	6 cut(s)	183, 210, 264, 417, 508, 569
BlsI	GCNGC	6 cut(s)	184, 211, 265, 418, 509, 570
Bme1390I	CCNGG	1 cut(s)	513
Bme18I	GGWCC	2 cut(s)	164, 469
BmgT120I	GGNCC	2 cut(s)	164, 469
BmiI	GGNNCC	2 cut(s)	375, 470
BmrFI	CCNGG	1 cut(s)	513
BmsI	GCATC	2 cut(s)	451, 569
BsaI	GGTCTC	1 cut(s)	449
BsaJI	CCNNGG	3 cut(s)	511, 512, 680
Bse1I	ACTGG	1 cut(s)	300
Bse3DI	GCAATG	1 cut(s)	258
BseBI	CCWGG	1 cut(s)	513
BseDI	CCNNGG	3 cut(s)	511, 512, 680
BseMI	GCAATG	1 cut(s)	258
BseMII	CTCAG	1 cut(s)	395
BseNI	ACTGG	1 cut(s)	300
BseRI	GAGGAG	2 cut(s)	174, 554
BseXI	GCAGC	5 cut(s)	194, 196, 250, 403, 519
BsgI	GTGCAG	1 cut(s)	249
BshFI	GGCC	1 cut(s)	275
BshNI	GGYRCC	1 cut(s)	373
BsiHKAI	GWGCWC	1 cut(s)	322
BslFI	GGGAC	1 cut(s)	482
BsmAI	GTCTC	1 cut(s)	449
BsmFI	GGGAC	1 cut(s)	482
BsmI	GAATGC	1 cut(s)	212
BsnI	GGCC	1 cut(s)	275
Bso31I	GGTCTC	1 cut(s)	449
Bsp1286I	GDGCHC	1 cut(s)	322
Bsp1407I	TGTACA	1 cut(s)	41
Bsp143I	GATC	1 cut(s)	765
BspACI	CCGC	1 cut(s)	568
BspANI	GGCC	1 cut(s)	275
BspCNI	CTCAG	1 cut(s)	394
BspLI	GGNNCC	2 cut(s)	375, 470
BspMI	ACCTGC	1 cut(s)	764
BspT107I	GGYRCC	1 cut(s)	373
BspTNI	GGTCTC	1 cut(s)	449
BsrDI	GCAATG	1 cut(s)	258
BsrGI	TGTACA	1 cut(s)	41
BsrI	ACTGG	1 cut(s)	300
BssECI	CCNNGG	3 cut(s)	511, 512, 680
BssMI	GATC	1 cut(s)	765
BssT1I	CCWWGG	1 cut(s)	680
Bst2UI	CCWGG	1 cut(s)	513
Bst4CI	ACNGT	1 cut(s)	33
BstAPI	GCANNNNNTGC	1 cut(s)	188
BstAUI	TGTACA	1 cut(s)	41
BstC8I	GCNNGC	3 cut(s)	131, 378, 668
BstDEI	CTNAG	2 cut(s)	381, 769
BstKTI	GATC	1 cut(s)	768
BstMAI	GTCTC	1 cut(s)	449
BstMBI	GATC	1 cut(s)	765
BstMWI	GCNNNNNNNGC	2 cut(s)	188, 272
BstNI	CCWGG	1 cut(s)	513
BstNSI	RCATGY	3 cut(s)	670, 678, 706
BstSCI	CCNGG	1 cut(s)	511
BstSFI	CTRYAG	2 cut(s)	102, 651
BstV1I	GCAGC	5 cut(s)	194, 196, 250, 403, 519
BsuRI	GGCC	1 cut(s)	275
BtsI	GCAGTG	1 cut(s)	70
BtsIMutI	CAGTG	3 cut(s)	29, 70, 777
BveI	ACCTGC	1 cut(s)	764
Cac8I	GCNNGC	3 cut(s)	131, 378, 668
Cfr13I	GGNCC	2 cut(s)	164, 469
Csp6I	GTAC	2 cut(s)	34, 42
CviAII	CATG	7 cut(s)	39, 277, 465, 667, 675, 703, 751
CviQI	GTAC	2 cut(s)	34, 42
DdeI	CTNAG	2 cut(s)	381, 769
DpnI	GATC	1 cut(s)	767
DpnII	GATC	1 cut(s)	765
DrdI	GACNNNNNNGTC	1 cut(s)	340
DseDI	GACNNNNNNGTC	1 cut(s)	340
EaeI	YGGCCR	1 cut(s)	273
Eco130I	CCWWGG	1 cut(s)	680
Eco31I	GGTCTC	1 cut(s)	449
Eco47I	GGWCC	2 cut(s)	164, 469
Eco57I	CTGAAG	1 cut(s)	552
EcoO109I	RGGNCCY	2 cut(s)	164, 469
EcoRII	CCWGG	1 cut(s)	511
EcoT14I	CCWWGG	1 cut(s)	680
EcoT22I	ATGCAT	1 cut(s)	466
ErhI	CCWWGG	1 cut(s)	680
FaeI	CATG	7 cut(s)	42, 280, 468, 670, 678, 706, 754
FalI	AAGNNNNNCTT	2 cut(s)	239, 271
FaqI	GGGAC	1 cut(s)	482
FatI	CATG	7 cut(s)	38, 276, 464, 666, 674, 702, 750
Fnu4HI	GCNGC	6 cut(s)	183, 210, 264, 417, 508, 569
Fsp4HI	GCNGC	6 cut(s)	183, 210, 264, 417, 508, 569
FspBI	CTAG	1 cut(s)	54
GluI	GCNGC	6 cut(s)	183, 210, 264, 417, 508, 569
HaeIII	GGCC	1 cut(s)	275
Hin1II	CATG	7 cut(s)	42, 280, 468, 670, 678, 706, 754
HphI	GGTGA	1 cut(s)	509
Hpy188I	TCNGA	2 cut(s)	144, 235
Hpy188III	TCNNGA	2 cut(s)	388, 698
HpyAV	CCTTC	4 cut(s)	36, 177, 482, 550
HpyCH4III	ACNGT	1 cut(s)	33
HpyCH4IV	ACGT	1 cut(s)	659
HpyCH4V	TGCA	8 cut(s)	191, 212, 266, 280, 326, 464, 587, 759
HpyF10VI	GCNNNNNNNGC	2 cut(s)	188, 272
HpyF3I	CTNAG	2 cut(s)	381, 769
HpySE526I	ACGT	1 cut(s)	659
Hsp92II	CATG	7 cut(s)	42, 280, 468, 670, 678, 706, 754
Kzo9I	GATC	1 cut(s)	765
LmnI	GCTCC	1 cut(s)	541
LpnPI	CCDG	9 cut(s)	4, 183, 281, 390, 401, 498, 525, 711, 769
Lsp1109I	GCAGC	5 cut(s)	194, 196, 250, 403, 519
LweI	GCATC	2 cut(s)	451, 569
MaeI	CTAG	1 cut(s)	54
MaeII	ACGT	1 cut(s)	659
MaeIII	GTNAC	1 cut(s)	421
MalI	GATC	1 cut(s)	767
MboI	GATC	1 cut(s)	765
MboII	GAAGA	1 cut(s)	247
MfeI	CAATTG	2 cut(s)	186, 402
MhlI	GDGCHC	1 cut(s)	322
MlsI	TGGCCA	1 cut(s)	275
MluCI	AATT	8 cut(s)	78, 174, 186, 237, 336, 402, 588, 743
MluNI	TGGCCA	1 cut(s)	275
MnlI	CCTC	5 cut(s)	84, 105, 152, 155, 532
Mox20I	TGGCCA	1 cut(s)	275
Mph1103I	ATGCAT	1 cut(s)	466
MroXI	GAANNNNTTC	1 cut(s)	602
MscI	TGGCCA	1 cut(s)	275
MseI	TTAA	2 cut(s)	221, 714
Msp20I	TGGCCA	1 cut(s)	275
MspA1I	CMGCKG	1 cut(s)	209
MspR9I	CCNGG	1 cut(s)	513
MunI	CAATTG	2 cut(s)	186, 402
Mva1269I	GAATGC	1 cut(s)	212
MvaI	CCWGG	1 cut(s)	513
MwoI	GCNNNNNNNGC	2 cut(s)	188, 272
NdeII	GATC	1 cut(s)	765
NlaIII	CATG	7 cut(s)	42, 280, 468, 670, 678, 706, 754
NlaIV	GGNNCC	2 cut(s)	375, 470
NsiI	ATGCAT	1 cut(s)	466
NspI	RCATGY	3 cut(s)	670, 678, 706
PaeI	GCATGC	1 cut(s)	670
PasI	CCCWGGG	1 cut(s)	512
PciI	ACATGT	2 cut(s)	674, 702
PctI	GAATGC	1 cut(s)	212
PdmI	GAANNNNTTC	1 cut(s)	602
PkrI	GCNGC	6 cut(s)	184, 211, 265, 418, 509, 570
PpuMI	RGGWCCY	2 cut(s)	164, 469
PscI	ACATGT	2 cut(s)	674, 702
PsiI	TTATAA	1 cut(s)	734
Psp5II	RGGWCCY	2 cut(s)	164, 469
Psp6I	CCWGG	1 cut(s)	511
PspGI	CCWGG	1 cut(s)	511
PspN4I	GGNNCC	2 cut(s)	375, 470
PspPI	GGNCC	2 cut(s)	164, 469
PspPPI	RGGWCCY	2 cut(s)	164, 469
PsrI	GAACNNNNNNTAC	2 cut(s)	96, 128
PvuII	CAGCTG	1 cut(s)	209
RsaI	GTAC	2 cut(s)	35, 43
RsaNI	GTAC	2 cut(s)	34, 42
SaqAI	TTAA	2 cut(s)	221, 714
SatI	GCNGC	6 cut(s)	183, 210, 264, 417, 508, 569
Sau3AI	GATC	1 cut(s)	765
Sau96I	GGNCC	2 cut(s)	164, 469
ScrFI	CCNGG	1 cut(s)	513
SduI	GDGCHC	1 cut(s)	322
SfaNI	GCATC	2 cut(s)	451, 569
SfcI	CTRYAG	2 cut(s)	102, 651
SinI	GGWCC	2 cut(s)	164, 469
SphI	GCATGC	1 cut(s)	670
Sse9I	AATT	8 cut(s)	78, 174, 186, 237, 336, 402, 588, 743
SsiI	CCGC	1 cut(s)	568
SspI	AATATT	1 cut(s)	225
SspMI	CTAG	1 cut(s)	54
StyD4I	CCNGG	1 cut(s)	511
StyI	CCWWGG	1 cut(s)	680
TaaI	ACNGT	1 cut(s)	33
TaiI	ACGT	1 cut(s)	662
TasI	AATT	8 cut(s)	78, 174, 186, 237, 336, 402, 588, 743
TatI	WGTACW	2 cut(s)	33, 41
TauI	GCSGC	1 cut(s)	571
Tru1I	TTAA	2 cut(s)	221, 714
Tru9I	TTAA	2 cut(s)	221, 714
TscAI	CASTG	3 cut(s)	36, 70, 777
TseI	GCWGC	5 cut(s)	182, 209, 263, 416, 507
TspDTI	ATGAA	3 cut(s)	247, 356, 537
TspRI	CASTG	3 cut(s)	36, 70, 777
VpaK11BI	GGWCC	2 cut(s)	164, 469
XapI	RAATTY	1 cut(s)	743
XceI	RCATGY	3 cut(s)	670, 678, 706
XmnI	GAANNNNTTC	1 cut(s)	602
XspI	CTAG	1 cut(s)	54
Zsp2I	ATGCAT	1 cut(s)	466

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.