Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0007177

Physical Location & Seq

Genomic Coordinates Reverse (-)

10032208 .. 10036895

Gene Structure 4688 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00341520.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1095 bp

ATGGAGGGGTTGGTGCTTGTTCATACACCATTGATTCCTAGAAAGAAGCTTCCTTTGTTGGCTTTGGTGGATGCTCTACCATCTTGTACCGCTCTTTCTAGAAACCCCATCACACCCTCAATTAGTGGTGGTAGTGGACATGAATTCCAAGTAAGATATAGAGAGTTATCACGATTGGCGGGCAGCAAAGTCCGAGTCCAAGCATCTAATATTAGTATTGGATCTGGAGGCTATGAAGGCGGGGAGGAAAATAAGAAGCAGAAAATTGTTTCCAGTGATGCAAACAACAACAGTTCATCGGAAGTGTTTGGCAGTGAGAAGCCTCCAATTCAAATACCTTATCCTCTCTCTGTAGCTCTTGTTCTACTTGGGTGTGGCTTACTGTTTTCTCTGATTGCCTTTGTGAGAGGAGGACCTTCAACAATTTTAGCAGCAATTGCAAAATCAGGCTTCACAGCTGCATTCTCTTTAATATTTGTTTCAGAAATTGGCGACAAGACATTCTTCATTGCTGCACTCTTGGCCATGCAATATGAGAAAGGACTGGTTCTGTTGGGGTCAATGGGTGCTCTTGCACTTATGACAATTTTGTCTGTCATTATTGGGCGTATATTTCATTCGGTGCCTGCTCAGTTCCAGACAACCTTGCCAATTGGAGAATATGCTGCTGTAACTCTTTTACTATTCTTTGGTCTCAAATCAATAAAAGATGCATGGGACCTTCCATCAAATGTTGTTGAGAGTGGTGATAAAAGCAGCCCTGAGCTTGATGAATATGCTGAAGCAGAGGAGCTTGTAAAACAGAAGGCATCAAGGCGGCTCACTAATCCACTTGCAATTATTTGGAAATCATTCAGCCTTGTATTTGTTGCTGAATGGGGAGATCGCTCAATGCTTGCGACAATTGCTCTGGGTGCTGCACAGTCTCCATGGGGTGTGGCGGGTGGAGCAATTGCTGGACATGCACTTGCTACTTTCATTGCCGTTCTGGGAGGTGCATTTCTTGCCAAACACATTTCTGAGAAACTGGTTGGCTACATTGGTGGTGCTCTGTTTCTAGTTTTTGCAGTAGCTACATTTTTTGGAGTTTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009528 GO:0009536 GO:0009706 GO:0009941 GO:0016020 GO:0019866 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0042170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UPF0016

Protein Analysis

364

Amino Acids

38.45

Weight (kDa)

8.42

Isoelectric Point (pI)

33.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GDT1	PF01169	153 - 231	9.5e-17	Divalent cation/proton antiporter GDT1
GDT1	PF01169	282 - 356	7.4e-24	Divalent cation/proton antiporter GDT1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007177)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13590 AT4G13590
fragaria_vesca	FvH4_4g05550 FvH4_4g05550 FvH4_4g05550 FvH4_4g05550
malus_domestica	MD13G1229100.v1.1 MD13G1229200.v1.1 MD13G1229400.v1.1 MD16G1235000.v1.1 MD16G1235100.v1.1
prunus_persica	Prupe.1G057500_v2.0.a1
pyrus_communis	pycom13g20220
rosa_chinensis	RchiOBHm_Chr4g0396661
rosa_laevigata	RLG00000009512
rosa_multiflora	Rmu_sc0006586.1_g000015 Rmu_sc0010969.1_g000009
rosa_roxburghii	Rroxscaffold_5G00341520
rosa_rugosa	Rorug03G0348200 Rorug03G0348200
rosa_samantha	Rh4AG071100 Rh4BG069100 Rh4CG076900 Rh4DG066300
rosa_wichuraiana	Rw4G005680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	589
AccB1I	GGYRCC	1 cut(s)	622
AccBSI	CCGCTC	1 cut(s)	92
AciI	CCGC	5 cut(s)	90, 179, 240, 817, 941
AclWI	GGATC	1 cut(s)	229
AcoI	YGGCCR	1 cut(s)	522
AcsI	RAATTY	1 cut(s)	143
AcuI	CTGAAG	1 cut(s)	801
AfaI	GTAC	1 cut(s)	88
AgsI	TTSAA	2 cut(s)	332, 420
AluBI	AGCT	6 cut(s)	49, 356, 458, 766, 793, 1073
AluI	AGCT	6 cut(s)	49, 356, 458, 766, 793, 1073
Alw21I	GWGCWC	2 cut(s)	571, 1051
Alw26I	GTCTC	2 cut(s)	698, 930
AlwI	GGATC	1 cut(s)	229
AoxI	GGCC	1 cut(s)	522
ApeKI	GCWGC	7 cut(s)	183, 431, 458, 512, 665, 756, 917
ApoI	RAATTY	1 cut(s)	143
ArsI	GACNNNNNNTTYG	2 cut(s)	180, 212
Asp700I	GAANNNNTTC	1 cut(s)	851
AspS9I	GGNCC	2 cut(s)	413, 718
AsuHPI	GGTGA	1 cut(s)	758
AvaII	GGWCC	2 cut(s)	413, 718
BalI	TGGCCA	1 cut(s)	524
BanI	GGYRCC	1 cut(s)	622
Bbv12I	GWGCWC	2 cut(s)	571, 1051
BbvI	GCAGC	7 cut(s)	195, 443, 445, 499, 652, 768, 904
BccI	CCATC	3 cut(s)	88, 116, 733
BceAI	ACGGC	1 cut(s)	968
BcoDI	GTCTC	2 cut(s)	698, 930
BfaI	CTAG	3 cut(s)	39, 99, 1058
BfmI	CTRYAG	1 cut(s)	351
BisI	GCNGC	8 cut(s)	184, 432, 459, 513, 666, 757, 818, 918
BlsI	GCNGC	8 cut(s)	185, 433, 460, 514, 667, 758, 819, 919
Bme18I	GGWCC	2 cut(s)	413, 718
BmgT120I	GGNCC	2 cut(s)	413, 718
BmiI	GGNNCC	2 cut(s)	624, 719
BmsI	GCATC	5 cut(s)	61, 212, 268, 700, 818
BpmI	CTGGAG	1 cut(s)	246
Bpu10I	CCTNAGC	1 cut(s)	762
BsaI	GGTCTC	1 cut(s)	698
BsaJI	CCNNGG	1 cut(s)	929
Bse1I	ACTGG	3 cut(s)	273, 549, 1032
Bse3DI	GCAATG	2 cut(s)	507, 978
BseDI	CCNNGG	1 cut(s)	929
BseGI	GGATG	1 cut(s)	76
BseMI	GCAATG	2 cut(s)	507, 978
BseMII	CTCAG	3 cut(s)	644, 753, 1011
BseNI	ACTGG	3 cut(s)	273, 549, 1032
BseRI	GAGGAG	2 cut(s)	423, 803
BseXI	GCAGC	7 cut(s)	195, 443, 445, 499, 652, 768, 904
BsgI	GTGCAG	2 cut(s)	498, 903
BshFI	GGCC	1 cut(s)	524
BshNI	GGYRCC	1 cut(s)	622
BsiHKAI	GWGCWC	2 cut(s)	571, 1051
BslFI	GGGAC	1 cut(s)	731
BsmAI	GTCTC	2 cut(s)	698, 930
BsmFI	GGGAC	1 cut(s)	731
BsmI	GAATGC	1 cut(s)	461
BsnI	GGCC	1 cut(s)	524
Bso31I	GGTCTC	1 cut(s)	698
Bsp1286I	GDGCHC	2 cut(s)	571, 1051
Bsp143I	GATC	2 cut(s)	221, 883
Bsp19I	CCATGG	1 cut(s)	929
BspACI	CCGC	5 cut(s)	90, 179, 240, 817, 941
BspANI	GGCC	1 cut(s)	524
BspCNI	CTCAG	3 cut(s)	643, 754, 1012
BspLI	GGNNCC	2 cut(s)	624, 719
BspPI	GGATC	1 cut(s)	229
BspT107I	GGYRCC	1 cut(s)	622
BspTNI	GGTCTC	1 cut(s)	698
BsrBI	CCGCTC	1 cut(s)	92
BsrDI	GCAATG	2 cut(s)	507, 978
BsrI	ACTGG	3 cut(s)	273, 549, 1032
BssECI	CCNNGG	1 cut(s)	929
BssMI	GATC	2 cut(s)	221, 883
BssT1I	CCWWGG	1 cut(s)	929
Bst4CI	ACNGT	3 cut(s)	293, 384, 924
BstAPI	GCANNNNNTGC	2 cut(s)	437, 1004
BstC8I	GCNNGC	3 cut(s)	181, 627, 897
BstDEI	CTNAG	3 cut(s)	630, 762, 1020
BstDSI	CCRYGG	1 cut(s)	929
BstF5I	GGATG	1 cut(s)	76
BstKTI	GATC	2 cut(s)	224, 886
BstMAI	GTCTC	2 cut(s)	698, 930
BstMBI	GATC	2 cut(s)	221, 883
BstMWI	GCNNNNNNNGC	8 cut(s)	237, 437, 521, 905, 914, 947, 962, 1004
BstNSI	RCATGY	1 cut(s)	965
BstSFI	CTRYAG	1 cut(s)	351
BstV1I	GCAGC	7 cut(s)	195, 443, 445, 499, 652, 768, 904
BstX2I	RGATCY	1 cut(s)	221
BstYI	RGATCY	1 cut(s)	221
BsuRI	GGCC	1 cut(s)	524
BtgI	CCRYGG	1 cut(s)	929
BtsCI	GGATG	1 cut(s)	76
BtsI	GCAGTG	1 cut(s)	319
BtsIMutI	CAGTG	2 cut(s)	280, 319
Cac8I	GCNNGC	3 cut(s)	181, 627, 897
Cfr13I	GGNCC	2 cut(s)	413, 718
Csp6I	GTAC	1 cut(s)	87
CviAII	CATG	5 cut(s)	140, 526, 714, 930, 962
CviQI	GTAC	1 cut(s)	87
DdeI	CTNAG	3 cut(s)	630, 762, 1020
DpnI	GATC	2 cut(s)	223, 885
DpnII	GATC	2 cut(s)	221, 883
DrdI	GACNNNNNNGTC	1 cut(s)	589
DseDI	GACNNNNNNGTC	1 cut(s)	589
EaeI	YGGCCR	1 cut(s)	522
Eco130I	CCWWGG	1 cut(s)	929
Eco31I	GGTCTC	1 cut(s)	698
Eco47I	GGWCC	2 cut(s)	413, 718
Eco57I	CTGAAG	1 cut(s)	801
EcoO109I	RGGNCCY	2 cut(s)	413, 718
EcoRI	GAATTC	1 cut(s)	143
EcoT14I	CCWWGG	1 cut(s)	929
EcoT22I	ATGCAT	1 cut(s)	715
ErhI	CCWWGG	1 cut(s)	929
FaeI	CATG	5 cut(s)	143, 529, 717, 933, 965
FalI	AAGNNNNNCTT	2 cut(s)	488, 520
FaqI	GGGAC	1 cut(s)	731
FatI	CATG	5 cut(s)	139, 525, 713, 929, 961
FauI	CCCGC	3 cut(s)	172, 233, 934
Fnu4HI	GCNGC	8 cut(s)	184, 432, 459, 513, 666, 757, 818, 918
FokI	GGATG	1 cut(s)	83
Fsp4HI	GCNGC	8 cut(s)	184, 432, 459, 513, 666, 757, 818, 918
FspBI	CTAG	3 cut(s)	39, 99, 1058
GluI	GCNGC	8 cut(s)	184, 432, 459, 513, 666, 757, 818, 918
GsuI	CTGGAG	1 cut(s)	246
HaeIII	GGCC	1 cut(s)	524
Hin1II	CATG	5 cut(s)	143, 529, 717, 933, 965
HindIII	AAGCTT	1 cut(s)	47
HinfI	GANTC	2 cut(s)	34, 195
HphI	GGTGA	1 cut(s)	758
Hpy166II	GTNNAC	1 cut(s)	137
Hpy188I	TCNGA	6 cut(s)	194, 301, 393, 484, 1021, 1094
Hpy188III	TCNNGA	4 cut(s)	99, 171, 225, 637
Hpy8I	GTNNAC	1 cut(s)	137
HpyAV	CCTTC	4 cut(s)	230, 426, 731, 799
HpyCH4III	ACNGT	3 cut(s)	293, 384, 924
HpyF10VI	GCNNNNNNNGC	8 cut(s)	237, 437, 521, 905, 914, 947, 962, 1004
HpyF3I	CTNAG	3 cut(s)	630, 762, 1020
Hsp92II	CATG	5 cut(s)	143, 529, 717, 933, 965
Kzo9I	GATC	2 cut(s)	221, 883
LmnI	GCTCC	2 cut(s)	790, 947
Lsp1109I	GCAGC	7 cut(s)	195, 443, 445, 499, 652, 768, 904
LweI	GCATC	5 cut(s)	61, 212, 268, 700, 818
MaeI	CTAG	3 cut(s)	39, 99, 1058
MaeIII	GTNAC	1 cut(s)	670
MalI	GATC	2 cut(s)	223, 885
MbiI	CCGCTC	1 cut(s)	92
MboI	GATC	2 cut(s)	221, 883
MboII	GAAGA	1 cut(s)	496
MfeI	CAATTG	4 cut(s)	435, 651, 903, 951
MflI	RGATCY	1 cut(s)	221
MhlI	GDGCHC	2 cut(s)	571, 1051
MlsI	TGGCCA	1 cut(s)	524
MluNI	TGGCCA	1 cut(s)	524
MlyI	GAGTC	1 cut(s)	204
MnlI	CCTC	9 cut(s)	127, 221, 238, 333, 354, 401, 404, 781, 986
Mox20I	TGGCCA	1 cut(s)	524
Mph1103I	ATGCAT	1 cut(s)	715
MroXI	GAANNNNTTC	1 cut(s)	851
MscI	TGGCCA	1 cut(s)	524
MseI	TTAA	1 cut(s)	470
Msp20I	TGGCCA	1 cut(s)	524
MspA1I	CMGCKG	1 cut(s)	458
MunI	CAATTG	4 cut(s)	435, 651, 903, 951
Mva1269I	GAATGC	1 cut(s)	461
MwoI	GCNNNNNNNGC	8 cut(s)	237, 437, 521, 905, 914, 947, 962, 1004
NcoI	CCATGG	1 cut(s)	929
NdeII	GATC	2 cut(s)	221, 883
NlaIII	CATG	5 cut(s)	143, 529, 717, 933, 965
NlaIV	GGNNCC	2 cut(s)	624, 719
NsiI	ATGCAT	1 cut(s)	715
NspI	RCATGY	1 cut(s)	965
PctI	GAATGC	1 cut(s)	461
PdmI	GAANNNNTTC	1 cut(s)	851
PfeI	GAWTC	1 cut(s)	34
PkrI	GCNGC	8 cut(s)	185, 433, 460, 514, 667, 758, 819, 919
PleI	GAGTC	1 cut(s)	203
PpsI	GAGTC	1 cut(s)	203
PpuMI	RGGWCCY	2 cut(s)	413, 718
Psp5II	RGGWCCY	2 cut(s)	413, 718
PspN4I	GGNNCC	2 cut(s)	624, 719
PspPI	GGNCC	2 cut(s)	413, 718
PspPPI	RGGWCCY	2 cut(s)	413, 718
PsrI	GAACNNNNNNTAC	2 cut(s)	345, 377
PsuI	RGATCY	1 cut(s)	221
PvuII	CAGCTG	1 cut(s)	458
RsaI	GTAC	1 cut(s)	88
RsaNI	GTAC	1 cut(s)	87
SaqAI	TTAA	1 cut(s)	470
SatI	GCNGC	8 cut(s)	184, 432, 459, 513, 666, 757, 818, 918
Sau3AI	GATC	2 cut(s)	221, 883
Sau96I	GGNCC	2 cut(s)	413, 718
SchI	GAGTC	1 cut(s)	204
SduI	GDGCHC	2 cut(s)	571, 1051
SfaNI	GCATC	5 cut(s)	61, 212, 268, 700, 818
SfcI	CTRYAG	1 cut(s)	351
SinI	GGWCC	2 cut(s)	413, 718
SsiI	CCGC	5 cut(s)	90, 179, 240, 817, 941
SspI	AATATT	2 cut(s)	211, 474
SspMI	CTAG	3 cut(s)	39, 99, 1058
StyI	CCWWGG	1 cut(s)	929
TaaI	ACNGT	3 cut(s)	293, 384, 924
TauI	GCSGC	1 cut(s)	820
TfiI	GAWTC	1 cut(s)	34
Tru1I	TTAA	1 cut(s)	470
Tru9I	TTAA	1 cut(s)	470
TscAI	CASTG	2 cut(s)	280, 319
TseI	GCWGC	7 cut(s)	183, 431, 458, 512, 665, 756, 917
TspDTI	ATGAA	8 cut(s)	11, 156, 249, 285, 496, 605, 786, 967
TspRI	CASTG	2 cut(s)	280, 319
VpaK11BI	GGWCC	2 cut(s)	413, 718
XapI	RAATTY	1 cut(s)	143
XbaI	TCTAGA	1 cut(s)	98
XceI	RCATGY	1 cut(s)	965
XmnI	GAANNNNTTC	1 cut(s)	851
XspI	CTAG	3 cut(s)	39, 99, 1058
Zsp2I	ATGCAT	1 cut(s)	715

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.