AT4G16100

Protein of unknown function (DUF789)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0009360
Physical Location & Seq
Forward (+)
9105653 .. 9108159
2507 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G16100.1

Sequence Viewer

Length: 1185 bp
ATGTCGACTACCCGTAGGATCCGCGGCGAGAATCGGTTTTATAACCCACCTCCGATGAGAAAACTTCAACAAGAGCGTGAGAAGAAGAGACTTGAAGCGGAGGAGATAGAGAAAGAGAAGAAGAAGGCAAAGGAGATTCTCGATCGAAAGATTAAAGTCGAGGAGAAGGAGATTAAGCAACCTGAGGAGTGCTCGACCTCCGATTGCTCTGTGCCGAGTCGGGTCTCCTCCACCACCACCACCACCGGAACTACTTCTTCCAATTTGGGCCGGTTTCTGGATTGCACCACTCCAATTGTTTCTACGCAGCACTTGCCTTTGACAAGTAGTAAGGGGTGGAGAACTCGTGAACCAGAGTACCGTCCCTATTTCTTGCTGAATGATTTGTGGGATTCATTTGAGGAATGGAGCGCCTACGGTGTCGGGGTTCCTCTTCTTTTAAATGGGATCGATTCGGTTGTTCAGTATTATGTTCCTTATCTCTCTGGTATTCAGCTTTATGAAGACCCATCTAGAGCCTGCACAACTAGGAGGAGAGTTGGTGAAGAAAGTGATGGTGATTCGCCTAGAGACATGAGTAGCGATGGGAGCAATGACTGTAGAGAGCTTTCTCAAAATTTATACAGAGCCTCTTTGGAAGAGAAACCTTGCATTGGTTCATCGAGTGATGAGAGTGAGGCCAGCAGTAACTCTCCTGGTGAACTTGTCTTTGAGTATCTTGAGGGTGCTATGCCATTTGGCCGTGAACCATTGACCGACAAGATCTCAAACCTGTCATCACAATTCCCAGCACTCAGAACATACAGAAGCTGTGATCTATCACCTTCGAGTTGGGTCTCTGTTGCTTGGTACCCAATATACCGAATACCATTAGGTCAATCGTTACAAAACCTCGATGCTTGCTTTTTAACATTCCACTCGTTGTCAACACCCTGTCGAGGTACAAGCAATGAGGAAGGTCAAAGCTCAAGCAAATCGGTTGCATCGGCGAAGCTTCCATTGCCCACTTTCGGTCTCGCATCCTACAAGTTTAAACTGTCAGAATGGAGCCCAGAGAGTGACGTAGACGAGAACCAGAGAGTCGGGACGCTGCTACGAACAGCTGAAGAGTGGCTCAGGCGGTTGAAGGTGATTCTACCGGACTTTAGACACTTCATATCGCATAGTGGTTCGGCGTGGAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF789

Protein Analysis

394

Amino Acids

44.66

Weight (kDa)

5.69

Isoelectric Point (pI)

61.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF789 PF05623 87 - 385 7.8e-100 Protein of unknown function (DUF789)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 42
Acc65I GGTACC 1 cut(s) 849
AccB1I GGYRCC 1 cut(s) 849
AccI GTMKAC 2 cut(s) 5, 1065
AccII CGCG 1 cut(s) 24
AciI CCGC 4 cut(s) 22, 24, 98, 1120
AclWI GGATC 3 cut(s) 13, 26, 455
AcoI YGGCCR 1 cut(s) 739
AcsI RAATTY 1 cut(s) 616
AcuI CTGAAG 1 cut(s) 1125
AfaI GTAC 3 cut(s) 359, 851, 943
AfiI CCNNNNNNNGG 4 cut(s) 277, 653, 938, 1010
AgsI TTSAA 3 cut(s) 68, 95, 1126
AjnI CCWGG 1 cut(s) 694
AluBI AGCT 6 cut(s) 496, 607, 810, 966, 994, 1103
AluI AGCT 6 cut(s) 496, 607, 810, 966, 994, 1103
Alw21I GWGCWC 1 cut(s) 194
Alw26I GTCTC 5 cut(s) 82, 229, 564, 841, 1019
AlwI GGATC 3 cut(s) 13, 26, 455
AlwNI CAGNNNCTG 1 cut(s) 810
AoxI GGCC 3 cut(s) 268, 678, 739
ApeKI GCWGC 2 cut(s) 307, 1090
ApoI RAATTY 1 cut(s) 616
Asp700I GAANNNNTTC 1 cut(s) 253
Asp718I GGTACC 1 cut(s) 849
AspLEI GCGC 1 cut(s) 413
AspS9I GGNCC 1 cut(s) 268
AsuHPI GGTGA 5 cut(s) 554, 569, 710, 813, 1141
AxyI CCTNAGG 1 cut(s) 183
BaeI ACNNNNGTAYC 2 cut(s) 341, 374
BamHI GGATCC 1 cut(s) 18
BanI GGYRCC 1 cut(s) 849
BanII GRGCYC 1 cut(s) 1052
BauI CACGAG 1 cut(s) 345
BbsI GAAGAC 1 cut(s) 510
Bbv12I GWGCWC 1 cut(s) 194
BbvI GCAGC 2 cut(s) 319, 1077
BccI CCATC 3 cut(s) 517, 548, 578
BceAI ACGGC 1 cut(s) 726
BciT130I CCWGG 1 cut(s) 696
BcoDI GTCTC 5 cut(s) 82, 229, 564, 841, 1019
BfaI CTAG 3 cut(s) 513, 528, 567
BfmI CTRYAG 1 cut(s) 598
BfoI RGCGCY 1 cut(s) 414
BglII AGATCT 1 cut(s) 762
BisI GCNGC 3 cut(s) 25, 308, 1091
BlsI GCNGC 3 cut(s) 26, 309, 1092
Bme1390I CCNGG 1 cut(s) 696
BmgT120I GGNCC 1 cut(s) 268
BmiI GGNNCC 4 cut(s) 20, 429, 851, 1049
BmrFI CCNGG 1 cut(s) 696
BmsI GCATC 3 cut(s) 886, 992, 1028
BpiI GAAGAC 1 cut(s) 510
BplI GAGNNNNNCTC 2 cut(s) 176, 208
Bpu10I CCTNAGC 1 cut(s) 1115
BpuEI CTTGAG 2 cut(s) 740, 952
Bsa29I ATCGAT 1 cut(s) 450
BsaI GGTCTC 3 cut(s) 229, 841, 1019
BsaJI CCNNGG 1 cut(s) 22
BsaWI WCCGGW 2 cut(s) 245, 1138
BsaXI ACNNNNNCTCC 4 cut(s) 331, 361, 526, 556
Bsc4I CCNNNNNNNGG 4 cut(s) 277, 653, 938, 1010
Bse118I RCCGGY 1 cut(s) 270
Bse21I CCTNAGG 1 cut(s) 183
Bse3DI GCAATG 3 cut(s) 598, 955, 998
BseBI CCWGG 1 cut(s) 696
BseCI ATCGAT 1 cut(s) 450
BseDI CCNNGG 1 cut(s) 22
BseGI GGATG 1 cut(s) 1019
BseLI CCNNNNNNNGG 4 cut(s) 277, 653, 938, 1010
BseMI GCAATG 3 cut(s) 598, 955, 998
BseMII CTCAG 3 cut(s) 174, 808, 1129
BseRI GAGGAG 5 cut(s) 116, 176, 200, 217, 547
BseXI GCAGC 2 cut(s) 319, 1077
BseYI CCCAGC 1 cut(s) 787
BsgI GTGCAG 1 cut(s) 505
Bsh1236I CGCG 1 cut(s) 24
Bsh1285I CGRYCG 1 cut(s) 145
BshFI GGCC 3 cut(s) 270, 680, 741
BshNI GGYRCC 1 cut(s) 849
BshVI ATCGAT 1 cut(s) 450
BsiEI CGRYCG 1 cut(s) 145
BsiHKAI GWGCWC 1 cut(s) 194
BsiSI CCGG 3 cut(s) 246, 271, 1139
BslFI GGGAC 2 cut(s) 348, 1099
BslI CCNNNNNNNGG 4 cut(s) 277, 653, 938, 1010
BsmAI GTCTC 5 cut(s) 82, 229, 564, 841, 1019
BsmFI GGGAC 2 cut(s) 348, 1099
BsnI GGCC 3 cut(s) 270, 680, 741
Bso31I GGTCTC 3 cut(s) 229, 841, 1019
Bsp1286I GDGCHC 2 cut(s) 194, 1052
Bsp143I GATC 5 cut(s) 18, 142, 447, 762, 814
BspACI CCGC 4 cut(s) 22, 24, 98, 1120
BspANI GGCC 3 cut(s) 270, 680, 741
BspCNI CTCAG 3 cut(s) 175, 807, 1128
BspDI ATCGAT 1 cut(s) 450
BspFNI CGCG 1 cut(s) 24
BspLI GGNNCC 4 cut(s) 20, 429, 851, 1049
BspPI GGATC 3 cut(s) 13, 26, 455
BspT107I GGYRCC 1 cut(s) 849
BspTNI GGTCTC 3 cut(s) 229, 841, 1019
BsrDI GCAATG 3 cut(s) 598, 955, 998
BsrFI RCCGGY 1 cut(s) 270
BssAI RCCGGY 1 cut(s) 270
BssECI CCNNGG 1 cut(s) 22
BssMI GATC 5 cut(s) 18, 142, 447, 762, 814
BssSI CACGAG 1 cut(s) 345
Bst2BI CACGAG 1 cut(s) 345
Bst2UI CCWGG 1 cut(s) 696
Bst4CI ACNGT 4 cut(s) 362, 419, 599, 1038
Bst6I CTCTTC 4 cut(s) 80, 438, 633, 1101
BstAPI GCANNNNNTGC 1 cut(s) 313
BstC8I GCNNGC 3 cut(s) 520, 682, 901
BstDEI CTNAG 3 cut(s) 183, 794, 1115
BstDSI CCRYGG 1 cut(s) 22
BstF5I GGATG 1 cut(s) 1019
BstFNI CGCG 1 cut(s) 24
BstH2I RGCGCY 1 cut(s) 414
BstHHI GCGC 1 cut(s) 413
BstKTI GATC 5 cut(s) 21, 145, 450, 765, 817
BstMAI GTCTC 5 cut(s) 82, 229, 564, 841, 1019
BstMBI GATC 5 cut(s) 18, 142, 447, 762, 814
BstMCI CGRYCG 1 cut(s) 145
BstMWI GCNNNNNNNGC 3 cut(s) 313, 588, 1000
BstNI CCWGG 1 cut(s) 696
BstSCI CCNGG 1 cut(s) 694
BstSFI CTRYAG 1 cut(s) 598
BstUI CGCG 1 cut(s) 24
BstV1I GCAGC 2 cut(s) 319, 1077
BstV2I GAAGAC 1 cut(s) 510
BstX2I RGATCY 2 cut(s) 18, 762
BstYI RGATCY 2 cut(s) 18, 762
Bsu15I ATCGAT 1 cut(s) 450
Bsu36I CCTNAGG 1 cut(s) 183
BsuRI GGCC 3 cut(s) 270, 680, 741
BsuTUI ATCGAT 1 cut(s) 450
BtgI CCRYGG 1 cut(s) 22
BtgZI GCGATG 1 cut(s) 597
BtsCI GGATG 1 cut(s) 1019
Cac8I GCNNGC 3 cut(s) 520, 682, 901
CaiI CAGNNNCTG 1 cut(s) 810
CfoI GCGC 1 cut(s) 413
Cfr10I RCCGGY 1 cut(s) 270
Cfr13I GGNCC 1 cut(s) 268
Cfr42I CCGCGG 1 cut(s) 25
ClaI ATCGAT 1 cut(s) 450
CseI GACGC 1 cut(s) 1096
Csp6I GTAC 3 cut(s) 358, 850, 942
CspCI CAANNNNNGTGG 2 cut(s) 277, 312
CviAII CATG 1 cut(s) 574
CviQI GTAC 3 cut(s) 358, 850, 942
DdeI CTNAG 3 cut(s) 183, 794, 1115
DpnI GATC 5 cut(s) 20, 144, 449, 764, 816
DpnII GATC 5 cut(s) 18, 142, 447, 762, 814
DraI TTTAAA 2 cut(s) 441, 1033
EaeI YGGCCR 1 cut(s) 739
Eam1104I CTCTTC 4 cut(s) 80, 438, 633, 1101
EarI CTCTTC 4 cut(s) 80, 438, 633, 1101
Eco24I GRGCYC 1 cut(s) 1052
Eco31I GGTCTC 3 cut(s) 229, 841, 1019
Eco57I CTGAAG 1 cut(s) 1125
Eco81I CCTNAGG 1 cut(s) 183
EcoRII CCWGG 1 cut(s) 694
EcoT38I GRGCYC 1 cut(s) 1052
FaeI CATG 1 cut(s) 577
FaqI GGGAC 2 cut(s) 348, 1099
FatI CATG 1 cut(s) 573
FblI GTMKAC 2 cut(s) 5, 1065
Fnu4HI GCNGC 3 cut(s) 25, 308, 1091
FokI GGATG 1 cut(s) 1006
FriOI GRGCYC 1 cut(s) 1052
Fsp4HI GCNGC 3 cut(s) 25, 308, 1091
FspBI CTAG 3 cut(s) 513, 528, 567
GlaI GCGC 1 cut(s) 412
GluI GCNGC 3 cut(s) 25, 308, 1091
GsaI CCCAGC 1 cut(s) 791
HaeII RGCGCY 1 cut(s) 414
HaeIII GGCC 3 cut(s) 270, 680, 741
HapII CCGG 3 cut(s) 246, 271, 1139
HgaI GACGC 1 cut(s) 1096
HhaI GCGC 1 cut(s) 413
Hin1II CATG 1 cut(s) 577
Hin6I GCGC 1 cut(s) 411
HinP1I GCGC 1 cut(s) 411
HincII GTYRAC 2 cut(s) 6, 927
HindII GTYRAC 2 cut(s) 6, 927
HindIII AAGCTT 1 cut(s) 992
HinfI GANTC 8 cut(s) 31, 136, 217, 392, 452, 560, 1080, 1132
HpaII CCGG 3 cut(s) 246, 271, 1139
HphI GGTGA 5 cut(s) 554, 569, 710, 813, 1141
Hpy166II GTNNAC 6 cut(s) 6, 350, 701, 746, 927, 1066
Hpy188I TCNGA 4 cut(s) 54, 202, 797, 1042
Hpy188III TCNNGA 6 cut(s) 140, 278, 347, 513, 719, 1084
Hpy8I GTNNAC 6 cut(s) 6, 350, 701, 746, 927, 1066
HpyAV CCTTC 5 cut(s) 118, 160, 834, 950, 1120
HpyCH4III ACNGT 4 cut(s) 362, 419, 599, 1038
HpyCH4IV ACGT 1 cut(s) 1062
HpyCH4V TGCA 4 cut(s) 285, 522, 651, 983
HpyF10VI GCNNNNNNNGC 3 cut(s) 313, 588, 1000
HpyF3I CTNAG 3 cut(s) 183, 794, 1115
HpySE526I ACGT 1 cut(s) 1062
Hsp92II CATG 1 cut(s) 577
HspAI GCGC 1 cut(s) 411
KpnI GGTACC 1 cut(s) 853
KspI CCGCGG 1 cut(s) 25
Kzo9I GATC 5 cut(s) 18, 142, 447, 762, 814
LmnI GCTCC 3 cut(s) 408, 588, 1047
Lsp1109I GCAGC 2 cut(s) 319, 1077
LweI GCATC 3 cut(s) 886, 992, 1028
MaeI CTAG 3 cut(s) 513, 528, 567
MaeII ACGT 1 cut(s) 1062
MaeIII GTNAC 3 cut(s) 686, 882, 1058
MalI GATC 5 cut(s) 20, 144, 449, 764, 816
MboI GATC 5 cut(s) 18, 142, 447, 762, 814
MfeI CAATTG 1 cut(s) 294
MflI RGATCY 2 cut(s) 18, 762
MhlI GDGCHC 2 cut(s) 194, 1052
MluCI AATT 4 cut(s) 262, 294, 616, 782
MlyI GAGTC 2 cut(s) 226, 1089
MroXI GAANNNNTTC 1 cut(s) 253
MseI TTAA 5 cut(s) 153, 174, 440, 908, 1032
MspA1I CMGCKG 2 cut(s) 24, 1103
MspI CCGG 3 cut(s) 246, 271, 1139
MspR9I CCNGG 1 cut(s) 696
MssI GTTTAAAC 1 cut(s) 1033
MunI CAATTG 1 cut(s) 294
MvaI CCWGG 1 cut(s) 696
MvnI CGCG 1 cut(s) 24
MwoI GCNNNNNNNGC 3 cut(s) 313, 588, 1000
NdeII GATC 5 cut(s) 18, 142, 447, 762, 814
NlaIII CATG 1 cut(s) 577
NlaIV GGNNCC 4 cut(s) 20, 429, 851, 1049
NmeAIII GCCGAG 1 cut(s) 240
NmuCI GTSAC 1 cut(s) 1058
PdmI GAANNNNTTC 1 cut(s) 253
PfeI GAWTC 6 cut(s) 31, 136, 392, 452, 560, 1132
PkrI GCNGC 3 cut(s) 26, 309, 1092
Ple19I CGATCG 1 cut(s) 145
PleI GAGTC 2 cut(s) 225, 1088
PmeI GTTTAAAC 1 cut(s) 1033
PpsI GAGTC 2 cut(s) 225, 1088
PsiI TTATAA 1 cut(s) 42
Psp6I CCWGG 1 cut(s) 694
PspFI CCCAGC 1 cut(s) 787
PspGI CCWGG 1 cut(s) 694
PspN4I GGNNCC 4 cut(s) 20, 429, 851, 1049
PspPI GGNCC 1 cut(s) 268
PstNI CAGNNNCTG 1 cut(s) 810
PsuI RGATCY 2 cut(s) 18, 762
PvuI CGATCG 1 cut(s) 145
PvuII CAGCTG 1 cut(s) 1103
RsaI GTAC 3 cut(s) 359, 851, 943
RsaNI GTAC 3 cut(s) 358, 850, 942
SacII CCGCGG 1 cut(s) 25
SalI GTCGAC 1 cut(s) 4
SaqAI TTAA 5 cut(s) 153, 174, 440, 908, 1032
SatI GCNGC 3 cut(s) 25, 308, 1091
Sau3AI GATC 5 cut(s) 18, 142, 447, 762, 814
Sau96I GGNCC 1 cut(s) 268
SchI GAGTC 2 cut(s) 226, 1089
ScrFI CCNGG 1 cut(s) 696
SduI GDGCHC 2 cut(s) 194, 1052
SfaNI GCATC 3 cut(s) 886, 992, 1028
SfcI CTRYAG 1 cut(s) 598
Sfr303I CCGCGG 1 cut(s) 25
SgrBI CCGCGG 1 cut(s) 25
SmlI CTYRAG 2 cut(s) 719, 967
SmoI CTYRAG 2 cut(s) 719, 967
Sse9I AATT 4 cut(s) 262, 294, 616, 782
SsiI CCGC 4 cut(s) 22, 24, 98, 1120
SspMI CTAG 3 cut(s) 513, 528, 567
StyD4I CCNGG 1 cut(s) 694
TaaI ACNGT 4 cut(s) 362, 419, 599, 1038
TaiI ACGT 1 cut(s) 1065
TaqII GACCGA 2 cut(s) 770, 1001
TasI AATT 4 cut(s) 262, 294, 616, 782
TauI GCSGC 1 cut(s) 27
TfiI GAWTC 6 cut(s) 31, 136, 392, 452, 560, 1132
Tru1I TTAA 5 cut(s) 153, 174, 440, 908, 1032
Tru9I TTAA 5 cut(s) 153, 174, 440, 908, 1032
TseFI GTSAC 1 cut(s) 1058
TseI GCWGC 2 cut(s) 307, 1090
Tsp45I GTSAC 1 cut(s) 1058
TspDTI ATGAA 4 cut(s) 384, 516, 648, 1144
XapI RAATTY 1 cut(s) 616
XbaI TCTAGA 1 cut(s) 512
XmiI GTMKAC 2 cut(s) 5, 1065
XmnI GAANNNNTTC 1 cut(s) 253
XspI CTAG 3 cut(s) 513, 528, 567
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.