Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0014711.1

Orthogroup ID

OG0009360

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 844

Gene Structure 844 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0014711.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

gctcggggcgagaaccggttctacaacccgcccccgattcgagagcgacaacaccagcaactgcttcagcagcagcagcagcagcagcagaagctcgaacaggagaagcagcagcatcagaggcggccggtgtcggtgtcggtggtggagtccgacgactgtgctacgtcgcatagttccgggtcgggtcgggaagcgctcagcgaggccgcgaatttagatcggttccttgagttcacaacgcccctggctcgagctcattttttgcccaagacgagtagcaggggatggaggactcatgcgccggagttacatccctactttgtgcttggagatttgtgggaatctttcaaggagtggagtgcgtacggcgcgggtgtccctcttttgttaaatgggagtgactctgtcatacagtactatgtaccttacttgtctgccattcagctctatgtagacccatcaaagcctcccacaaggataaggttagcagtacgttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF789

Protein Analysis

166

Amino Acids

19.04

Weight (kDa)

8.78

Isoelectric Point (pI)

46.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009360)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16100
fragaria_vesca	FvH4_4g19180 FvH4_4g19180
malus_domestica	MD13G1160300.v1.1 MD13G1160400.v1.1 MD16G1159600.v1.1
prunus_persica	Prupe.1G126800_v2.0.a1
pyrus_communis	pycom13g13640 pycom16g13450
rosa_chinensis	RchiOBHm_Chr4g0424141
rosa_laevigata	RLG00000007501
rosa_multiflora	Rmu_sc0002260.1_g000045 Rmu_sc0014711.1_g000001 Rmu_sc0019763.1_g000001 Rmu_sc0019764.1_g000001
rosa_roxburghii	Rroxscaffold_5G00366130
rosa_rugosa	Rorug04G0193400
rosa_samantha	Rh4AG251300 Rh4BG256400 Rh4CG267300 Rh4DG251000
rosa_wichuraiana	Rw4G021670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	456
AccII	CGCG	2 cut(s)	212, 374
AciI	CCGC	4 cut(s)	29, 124, 210, 374
AcoI	YGGCCR	1 cut(s)	125
AcsI	RAATTY	1 cut(s)	214
AcuI	CTGAAG	1 cut(s)	50
AfaI	GTAC	4 cut(s)	368, 419, 426, 495
AfeI	AGCGCT	1 cut(s)	198
AgeI	ACCGGT	1 cut(s)	15
AgsI	TTSAA	1 cut(s)	352
AjnI	CCWGG	1 cut(s)	246
AluBI	AGCT	3 cut(s)	94, 257, 448
AluI	AGCT	3 cut(s)	94, 257, 448
Alw21I	GWGCWC	1 cut(s)	259
AlwNI	CAGNNNCTG	1 cut(s)	61
Ama87I	CYCGRG	2 cut(s)	3, 252
Aor51HI	AGCGCT	1 cut(s)	198
AoxI	GGCC	2 cut(s)	125, 207
ApeKI	GCWGC	8 cut(s)	70, 73, 76, 79, 82, 85, 109, 112
ApoI	RAATTY	1 cut(s)	214
AsiGI	ACCGGT	1 cut(s)	15
Asp700I	GAANNNNTTC	1 cut(s)	17
AspLEI	GCGC	3 cut(s)	199, 304, 374
AsuC2I	CCSGG	1 cut(s)	181
AvaI	CYCGRG	2 cut(s)	3, 252
BanII	GRGCYC	1 cut(s)	259
Bbv12I	GWGCWC	1 cut(s)	259
BbvI	GCAGC	8 cut(s)	82, 85, 88, 91, 94, 97, 121, 124
BccI	CCATC	2 cut(s)	282, 469
BceAI	ACGGC	1 cut(s)	385
BcgI	CGANNNNNNTGC	2 cut(s)	143, 177
BciT130I	CCWGG	1 cut(s)	248
BcnI	CCSGG	1 cut(s)	181
BfoI	RGCGCY	1 cut(s)	200
BlpI	GCTNAGC	1 cut(s)	200
BmcAI	AGTACT	1 cut(s)	419
Bme1390I	CCNGG	2 cut(s)	181, 248
BmeT110I	CYCGRG	2 cut(s)	3, 252
BmiI	GGNNCC	1 cut(s)	227
BmrFI	CCNGG	2 cut(s)	181, 248
BmsI	GCATC	1 cut(s)	124
Bpu1102I	GCTNAGC	1 cut(s)	200
BpuEI	CTTGAG	1 cut(s)	251
BpuMI	CCSGG	1 cut(s)	181
BsaJI	CCNNGG	1 cut(s)	246
BsaWI	WCCGGW	1 cut(s)	15
Bse118I	RCCGGY	2 cut(s)	15, 127
BseBI	CCWGG	1 cut(s)	248
BseDI	CCNNGG	1 cut(s)	246
BseGI	GGATG	2 cut(s)	293, 313
BseMII	CTCAG	1 cut(s)	214
BseX3I	CGGCCG	1 cut(s)	125
BseXI	GCAGC	8 cut(s)	82, 85, 88, 91, 94, 97, 121, 124
Bsh1236I	CGCG	2 cut(s)	212, 374
Bsh1285I	CGRYCG	1 cut(s)	128
BshFI	GGCC	2 cut(s)	127, 209
BshTI	ACCGGT	1 cut(s)	15
BsiEI	CGRYCG	1 cut(s)	128
BsiHKAI	GWGCWC	1 cut(s)	259
BsiHKCI	CYCGRG	2 cut(s)	3, 252
BsiSI	CCGG	4 cut(s)	16, 128, 180, 305
BsiWI	CGTACG	1 cut(s)	366
BslFI	GGGAC	1 cut(s)	365
BsmFI	GGGAC	1 cut(s)	365
BsnI	GGCC	2 cut(s)	127, 209
BsoBI	CYCGRG	2 cut(s)	3, 252
Bsp1286I	GDGCHC	1 cut(s)	259
Bsp143I	GATC	1 cut(s)	220
Bsp1720I	GCTNAGC	1 cut(s)	200
BspACI	CCGC	4 cut(s)	29, 124, 210, 374
BspANI	GGCC	2 cut(s)	127, 209
BspCNI	CTCAG	1 cut(s)	213
BspFNI	CGCG	2 cut(s)	212, 374
BspLI	GGNNCC	1 cut(s)	227
BsrFI	RCCGGY	2 cut(s)	15, 127
BssAI	RCCGGY	2 cut(s)	15, 127
BssECI	CCNNGG	1 cut(s)	246
BssMI	GATC	1 cut(s)	220
Bst2UI	CCWGG	1 cut(s)	248
Bst4CI	ACNGT	2 cut(s)	161, 417
BstDEI	CTNAG	1 cut(s)	200
BstF5I	GGATG	2 cut(s)	293, 313
BstFNI	CGCG	2 cut(s)	212, 374
BstH2I	RGCGCY	1 cut(s)	200
BstHHI	GCGC	3 cut(s)	199, 304, 374
BstKTI	GATC	1 cut(s)	223
BstMBI	GATC	1 cut(s)	220
BstMCI	CGRYCG	1 cut(s)	128
BstMWI	GCNNNNNNNGC	8 cut(s)	70, 76, 79, 82, 85, 91, 121, 371
BstNI	CCWGG	1 cut(s)	248
BstSCI	CCNGG	2 cut(s)	179, 246
BstUI	CGCG	2 cut(s)	212, 374
BstV1I	GCAGC	8 cut(s)	82, 85, 88, 91, 94, 97, 121, 124
BstZI	CGGCCG	1 cut(s)	125
BsuRI	GGCC	2 cut(s)	127, 209
BtsCI	GGATG	2 cut(s)	293, 313
CaiI	CAGNNNCTG	1 cut(s)	61
CfoI	GCGC	3 cut(s)	199, 304, 374
Cfr10I	RCCGGY	2 cut(s)	15, 127
Csp6I	GTAC	4 cut(s)	367, 418, 425, 494
CspAI	ACCGGT	1 cut(s)	15
CviAII	CATG	1 cut(s)	299
CviJI	RGCY	7 cut(s)	94, 127, 209, 251, 257, 448, 469
CviKI_1	RGCY	7 cut(s)	94, 127, 209, 251, 257, 448, 469
CviQI	GTAC	4 cut(s)	367, 418, 425, 494
DdeI	CTNAG	1 cut(s)	200
DpnI	GATC	1 cut(s)	222
DpnII	GATC	1 cut(s)	220
EaeI	YGGCCR	1 cut(s)	125
EagI	CGGCCG	1 cut(s)	125
Ecl136II	GAGCTC	1 cut(s)	257
EclXI	CGGCCG	1 cut(s)	125
Eco24I	GRGCYC	1 cut(s)	259
Eco47III	AGCGCT	1 cut(s)	198
Eco52I	CGGCCG	1 cut(s)	125
Eco53kI	GAGCTC	1 cut(s)	257
Eco57I	CTGAAG	1 cut(s)	50
Eco88I	CYCGRG	2 cut(s)	3, 252
EcoICRI	GAGCTC	1 cut(s)	257
EcoRII	CCWGG	1 cut(s)	246
EcoT38I	GRGCYC	1 cut(s)	259
FaeI	CATG	1 cut(s)	302
FaiI	YATR	5 cut(s)	174, 300, 413, 423, 453
FaqI	GGGAC	1 cut(s)	365
FatI	CATG	1 cut(s)	298
FauI	CCCGC	2 cut(s)	36, 367
FblI	GTMKAC	1 cut(s)	456
FokI	GGATG	2 cut(s)	300, 300
FriOI	GRGCYC	1 cut(s)	259
GlaI	GCGC	3 cut(s)	198, 303, 373
HaeII	RGCGCY	1 cut(s)	200
HaeIII	GGCC	2 cut(s)	127, 209
HapII	CCGG	4 cut(s)	16, 128, 180, 305
HhaI	GCGC	3 cut(s)	199, 304, 374
Hin1II	CATG	1 cut(s)	302
Hin6I	GCGC	3 cut(s)	197, 302, 372
HinP1I	GCGC	3 cut(s)	197, 302, 372
HinfI	GANTC	5 cut(s)	37, 149, 295, 344, 404
HpaII	CCGG	4 cut(s)	16, 128, 180, 305
Hpy166II	GTNNAC	2 cut(s)	237, 457
Hpy188I	TCNGA	2 cut(s)	120, 154
Hpy188III	TCNNGA	2 cut(s)	41, 191
Hpy8I	GTNNAC	2 cut(s)	237, 457
Hpy99I	CGWCG	2 cut(s)	158, 172
HpyCH4III	ACNGT	2 cut(s)	161, 417
HpyCH4IV	ACGT	2 cut(s)	167, 496
HpyF10VI	GCNNNNNNNGC	8 cut(s)	70, 76, 79, 82, 85, 91, 121, 371
HpyF3I	CTNAG	1 cut(s)	200
HpySE526I	ACGT	2 cut(s)	167, 496
Hsp92II	CATG	1 cut(s)	302
HspAI	GCGC	3 cut(s)	197, 302, 372
Kzo9I	GATC	1 cut(s)	220
LpnPI	CCDG	9 cut(s)	29, 68, 86, 141, 193, 233, 260, 268, 318
Lsp1109I	GCAGC	8 cut(s)	82, 85, 88, 91, 94, 97, 121, 124
LweI	GCATC	1 cut(s)	124
MaeII	ACGT	2 cut(s)	167, 496
MaeIII	GTNAC	2 cut(s)	309, 401
MalI	GATC	1 cut(s)	222
MboI	GATC	1 cut(s)	220
MhlI	GDGCHC	1 cut(s)	259
MluCI	AATT	1 cut(s)	214
MlyI	GAGTC	3 cut(s)	158, 289, 398
MmeI	TCCRAC	1 cut(s)	177
MnlI	CCTC	5 cut(s)	114, 199, 285, 393, 480
MroXI	GAANNNNTTC	1 cut(s)	17
MseI	TTAA	2 cut(s)	392, 499
MspI	CCGG	4 cut(s)	16, 128, 180, 305
MspR9I	CCNGG	2 cut(s)	181, 248
MvaI	CCWGG	1 cut(s)	248
MvnI	CGCG	2 cut(s)	212, 374
MwoI	GCNNNNNNNGC	8 cut(s)	70, 76, 79, 82, 85, 91, 121, 371
NciI	CCSGG	1 cut(s)	181
NdeII	GATC	1 cut(s)	220
NlaIII	CATG	1 cut(s)	302
NlaIV	GGNNCC	1 cut(s)	227
NmuCI	GTSAC	1 cut(s)	401
PaeR7I	CTCGAG	1 cut(s)	252
PdmI	GAANNNNTTC	1 cut(s)	17
PfeI	GAWTC	2 cut(s)	37, 344
Pfl23II	CGTACG	1 cut(s)	366
PflFI	GACNNNGTC	1 cut(s)	407
PinAI	ACCGGT	1 cut(s)	15
PleI	GAGTC	3 cut(s)	157, 289, 398
PpsI	GAGTC	3 cut(s)	157, 289, 398
Psp124BI	GAGCTC	1 cut(s)	259
Psp6I	CCWGG	1 cut(s)	246
PspGI	CCWGG	1 cut(s)	246
PspLI	CGTACG	1 cut(s)	366
PspN4I	GGNNCC	1 cut(s)	227
PspXI	VCTCGAGB	1 cut(s)	252
PsrI	GAACNNNNNNTAC	1 cut(s)	37
PstNI	CAGNNNCTG	1 cut(s)	61
PsyI	GACNNNGTC	1 cut(s)	407
RsaI	GTAC	4 cut(s)	368, 419, 426, 495
RsaNI	GTAC	4 cut(s)	367, 418, 425, 494
SacI	GAGCTC	1 cut(s)	259
SaqAI	TTAA	2 cut(s)	392, 499
Sau3AI	GATC	1 cut(s)	220
ScaI	AGTACT	1 cut(s)	419
SchI	GAGTC	3 cut(s)	158, 289, 398
ScrFI	CCNGG	2 cut(s)	181, 248
SduI	GDGCHC	1 cut(s)	259
SetI	ASST	7 cut(s)	96, 170, 259, 430, 450, 488, 499
SfaNI	GCATC	1 cut(s)	124
Sfr274I	CTCGAG	1 cut(s)	252
SlaI	CTCGAG	1 cut(s)	252
SmlI	CTYRAG	2 cut(s)	230, 252
SmoI	CTYRAG	2 cut(s)	230, 252
Sse9I	AATT	1 cut(s)	214
SsiI	CCGC	4 cut(s)	29, 124, 210, 374
SstI	GAGCTC	1 cut(s)	259
StyD4I	CCNGG	2 cut(s)	179, 246
TaaI	ACNGT	2 cut(s)	161, 417
TaiI	ACGT	2 cut(s)	170, 499
TaqI	TCGA	3 cut(s)	40, 96, 253
TasI	AATT	1 cut(s)	214
TatI	WGTACW	1 cut(s)	417
TauI	GCSGC	2 cut(s)	127, 212
TfiI	GAWTC	2 cut(s)	37, 344
Tru1I	TTAA	2 cut(s)	392, 499
Tru9I	TTAA	2 cut(s)	392, 499
TseFI	GTSAC	1 cut(s)	401
TseI	GCWGC	8 cut(s)	70, 73, 76, 79, 82, 85, 109, 112
Tsp45I	GTSAC	1 cut(s)	401
Tth111I	GACNNNGTC	1 cut(s)	407
XapI	RAATTY	1 cut(s)	214
XhoI	CTCGAG	1 cut(s)	252
XmiI	GTMKAC	1 cut(s)	456
XmnI	GAANNNNTTC	1 cut(s)	17
ZrmI	AGTACT	1 cut(s)	419

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.