Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002260.1

Orthogroup ID

OG0009360

Physical Location & Seq

Genomic Coordinates Reverse (-)

198205 .. 201004

Gene Structure 2800 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002260.1_g000045.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1236 bp

atgtctggtcacggcggagtttcgatcggtcgggctcggggcgagaaccggttctacaacccgcccccgattcgagagcgacaacaccagcaactgcttcagcagcagcagcagcagcagcagaagctcgaacaggagaagcagcagcatcagaggcggccggtgtcggtgtcggtggtggagtccgacgactgtgctacgtcgcatagttccgggtcgggtcgggaagcgctcagcgaggccgcgaatttagatcggttccttgagttcacaacgcccctggctcgagctcattttttgcccaagacgagtagcaggggatggaggactcatgcgccggagttacatccctactttgtgcttggagatttgtgggaatctttcaaggagtggagtgcgtacggcgcgggtgtccctcttttgttaaatgggagtgactctgtcatacagtactatgtaccttacttgtctgccattcagctctatgtagacccatcaaagcctcccacaaggataaggaagcctggtgatgacagtgatgcagagtcatcaagggagacaagtagtgatggcagcagtgattatggagcagaaagaggaatgaatggtgttgttgatgatgcttggagtcggcagaatattgctgatgtaaatggccatggttggaatagagtcttaccaagagataaacccttaactggttcctcaagtgatgaaagtgagatttgcaatcctccaggtcagcttgtatttcaatatttggagcacgatcaaccgtttggccgtgaacctttggctgataagattcaagttcttgcatcccaatttccagagctgaggacttacaggagctcggacttatcaccttctagttggatctctgtagcatggtatcctatatatcggatacctacaggtccaacattacagagtctggatgcttgcttcttgacctttcattccctttcgactcccttaaagggtacaagcactgataggcttcgtcccagcggtgcacgacctagagaggttcaaaatgccgacttcaaactctcgttgccaacttttggattggcttcctacaagttcaagggttccttttggaaccctaatggagtttacgaatctcaaaaggctaattctctattgcgagcagctgaaaactggctcaggctattgcaagttcatcatcctgatttcaacttctttgtgtcacacaatacaccaaggaggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF789

Protein Analysis

411

Amino Acids

46.27

Weight (kDa)

6.9

Isoelectric Point (pI)

42.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009360)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16100
fragaria_vesca	FvH4_4g19180 FvH4_4g19180
malus_domestica	MD13G1160300.v1.1 MD13G1160400.v1.1 MD16G1159600.v1.1
prunus_persica	Prupe.1G126800_v2.0.a1
pyrus_communis	pycom13g13640 pycom16g13450
rosa_chinensis	RchiOBHm_Chr4g0424141
rosa_laevigata	RLG00000007501
rosa_multiflora	Rmu_sc0002260.1_g000045 Rmu_sc0014711.1_g000001 Rmu_sc0019763.1_g000001 Rmu_sc0019764.1_g000001
rosa_roxburghii	Rroxscaffold_5G00366130
rosa_rugosa	Rorug04G0193400
rosa_samantha	Rh4AG251300 Rh4BG256400 Rh4CG267300 Rh4DG251000
rosa_wichuraiana	Rw4G021670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	1067
AccI	GTMKAC	1 cut(s)	489
AccII	CGCG	2 cut(s)	245, 407
AciI	CCGC	6 cut(s)	15, 62, 157, 243, 407, 1011
AclWI	GGATC	1 cut(s)	884
AcoI	YGGCCR	3 cut(s)	158, 655, 781
AcsI	RAATTY	1 cut(s)	247
AcuI	CTGAAG	1 cut(s)	83
AfaI	GTAC	4 cut(s)	401, 452, 459, 985
AfeI	AGCGCT	1 cut(s)	231
AfiI	CCNNNNNNNGG	3 cut(s)	698, 980, 1067
AgeI	ACCGGT	1 cut(s)	48
AgsI	TTSAA	7 cut(s)	385, 755, 809, 1034, 1048, 1090, 1201
AjnI	CCWGG	3 cut(s)	279, 523, 736
AluBI	AGCT	7 cut(s)	127, 290, 481, 745, 835, 852, 1157
AluI	AGCT	7 cut(s)	127, 290, 481, 745, 835, 852, 1157
Alw21I	GWGCWC	4 cut(s)	292, 768, 854, 1018
Alw26I	GTCTC	1 cut(s)	551
Alw44I	GTGCAC	1 cut(s)	1014
AlwI	GGATC	1 cut(s)	884
AlwNI	CAGNNNCTG	2 cut(s)	94, 934
Ama87I	CYCGRG	2 cut(s)	36, 285
Aor51HI	AGCGCT	1 cut(s)	231
AoxI	GGCC	4 cut(s)	158, 240, 655, 781
ApaLI	GTGCAC	1 cut(s)	1014
ApoI	RAATTY	1 cut(s)	247
AsiGI	ACCGGT	1 cut(s)	48
Asp700I	GAANNNNTTC	1 cut(s)	50
AspLEI	GCGC	3 cut(s)	232, 337, 407
AspS9I	GGNCC	1 cut(s)	917
AsuC2I	CCSGG	1 cut(s)	214
AsuHPI	GGTGA	2 cut(s)	539, 855
AvaI	CYCGRG	2 cut(s)	36, 285
AvaII	GGWCC	1 cut(s)	917
BaeGI	GKGCMC	1 cut(s)	1018
BalI	TGGCCA	1 cut(s)	657
BanII	GRGCYC	3 cut(s)	37, 292, 854
Bbv12I	GWGCWC	4 cut(s)	292, 768, 854, 1018
BbvCI	CCTCAGC	1 cut(s)	836
BccI	CCATC	3 cut(s)	315, 502, 563
BceAI	ACGGC	3 cut(s)	28, 418, 768
BcgI	CGANNNNNNTGC	2 cut(s)	176, 210
BciT130I	CCWGG	3 cut(s)	281, 525, 738
BciVI	GTATCC	2 cut(s)	900, 903
BcnI	CCSGG	1 cut(s)	214
BcoDI	GTCTC	1 cut(s)	551
BfaI	CTAG	2 cut(s)	870, 1023
BfmI	CTRYAG	2 cut(s)	882, 912
BfoI	RGCGCY	1 cut(s)	233
BfuI	GTATCC	2 cut(s)	900, 903
BlpI	GCTNAGC	1 cut(s)	233
BmcAI	AGTACT	1 cut(s)	452
Bme1390I	CCNGG	4 cut(s)	214, 281, 525, 738
Bme18I	GGWCC	1 cut(s)	917
BmeT110I	CYCGRG	2 cut(s)	36, 285
BmgT120I	GGNCC	1 cut(s)	917
BmiI	GGNNCC	4 cut(s)	260, 703, 1096, 1106
BmrFI	CCNGG	4 cut(s)	214, 281, 525, 738
BmsI	GCATC	5 cut(s)	157, 529, 610, 827, 928
BpmI	CTGGAG	1 cut(s)	720
Bpu10I	CCTNAGC	2 cut(s)	836, 1169
Bpu1102I	GCTNAGC	1 cut(s)	233
BpuEI	CTTGAG	2 cut(s)	284, 691
BpuMI	CCSGG	1 cut(s)	214
BsaJI	CCNNGG	3 cut(s)	279, 658, 1226
BsaWI	WCCGGW	1 cut(s)	48
Bsc4I	CCNNNNNNNGG	3 cut(s)	698, 980, 1067
Bse118I	RCCGGY	2 cut(s)	48, 160
Bse1I	ACTGG	2 cut(s)	703, 1169
BseBI	CCWGG	3 cut(s)	281, 525, 738
BseDI	CCNNGG	3 cut(s)	279, 658, 1226
BseGI	GGATG	5 cut(s)	326, 346, 818, 943, 1189
BseLI	CCNNNNNNNGG	3 cut(s)	698, 980, 1067
BseMII	CTCAG	3 cut(s)	247, 827, 1183
BseNI	ACTGG	2 cut(s)	703, 1169
BseSI	GKGCMC	1 cut(s)	1018
BseX3I	CGGCCG	1 cut(s)	158
BseYI	CCCAGC	1 cut(s)	1007
Bsh1236I	CGCG	2 cut(s)	245, 407
Bsh1285I	CGRYCG	3 cut(s)	27, 31, 161
BshFI	GGCC	4 cut(s)	160, 242, 657, 783
BshTI	ACCGGT	1 cut(s)	48
BsiEI	CGRYCG	3 cut(s)	27, 31, 161
BsiHKAI	GWGCWC	4 cut(s)	292, 768, 854, 1018
BsiHKCI	CYCGRG	2 cut(s)	36, 285
BsiSI	CCGG	4 cut(s)	49, 161, 213, 338
BsiWI	CGTACG	1 cut(s)	399
BslFI	GGGAC	2 cut(s)	398, 990
BslI	CCNNNNNNNGG	3 cut(s)	698, 980, 1067
BsmAI	GTCTC	1 cut(s)	551
BsmFI	GGGAC	2 cut(s)	398, 990
BsnI	GGCC	4 cut(s)	160, 242, 657, 783
BsoBI	CYCGRG	2 cut(s)	36, 285
Bsp1286I	GDGCHC	5 cut(s)	37, 292, 768, 854, 1018
Bsp143I	GATC	4 cut(s)	24, 253, 769, 876
Bsp1720I	GCTNAGC	1 cut(s)	233
Bsp19I	CCATGG	1 cut(s)	658
BspACI	CCGC	6 cut(s)	15, 62, 157, 243, 407, 1011
BspANI	GGCC	4 cut(s)	160, 242, 657, 783
BspCNI	CTCAG	3 cut(s)	246, 828, 1182
BspFNI	CGCG	2 cut(s)	245, 407
BspLI	GGNNCC	4 cut(s)	260, 703, 1096, 1106
BspPI	GGATC	1 cut(s)	884
BsrFI	RCCGGY	2 cut(s)	48, 160
BsrI	ACTGG	2 cut(s)	703, 1169
BssAI	RCCGGY	2 cut(s)	48, 160
BssECI	CCNNGG	3 cut(s)	279, 658, 1226
BssMI	GATC	4 cut(s)	24, 253, 769, 876
BssT1I	CCWWGG	2 cut(s)	658, 1226
Bst2UI	CCWGG	3 cut(s)	281, 525, 738
Bst4CI	ACNGT	4 cut(s)	194, 450, 536, 777
BstC8I	GCNNGC	2 cut(s)	943, 1152
BstDEI	CTNAG	3 cut(s)	233, 836, 1169
BstDSI	CCRYGG	1 cut(s)	658
BstF5I	GGATG	5 cut(s)	326, 346, 818, 943, 1189
BstFNI	CGCG	2 cut(s)	245, 407
BstH2I	RGCGCY	1 cut(s)	233
BstHHI	GCGC	3 cut(s)	232, 337, 407
BstKTI	GATC	4 cut(s)	27, 256, 772, 879
BstMAI	GTCTC	1 cut(s)	551
BstMBI	GATC	4 cut(s)	24, 253, 769, 876
BstMCI	CGRYCG	3 cut(s)	27, 31, 161
BstMWI	GCNNNNNNNGC	8 cut(s)	103, 109, 112, 115, 118, 124, 154, 404
BstNI	CCWGG	3 cut(s)	281, 525, 738
BstSCI	CCNGG	4 cut(s)	212, 279, 523, 736
BstSFI	CTRYAG	2 cut(s)	882, 912
BstSLI	GKGCMC	1 cut(s)	1018
BstUI	CGCG	2 cut(s)	245, 407
BstX2I	RGATCY	1 cut(s)	876
BstYI	RGATCY	1 cut(s)	876
BstZI	CGGCCG	1 cut(s)	158
BsuI	GTATCC	2 cut(s)	900, 903
BsuRI	GGCC	4 cut(s)	160, 242, 657, 783
BtgI	CCRYGG	1 cut(s)	658
BtsCI	GGATG	5 cut(s)	326, 346, 818, 943, 1189
BtsI	GCAGTG	1 cut(s)	583
BtsIMutI	CAGTG	3 cut(s)	541, 583, 990
Cac8I	GCNNGC	2 cut(s)	943, 1152
CaiI	CAGNNNCTG	2 cut(s)	94, 934
CfoI	GCGC	3 cut(s)	232, 337, 407
Cfr10I	RCCGGY	2 cut(s)	48, 160
Cfr13I	GGNCC	1 cut(s)	917
Csp6I	GTAC	4 cut(s)	400, 451, 458, 984
CspAI	ACCGGT	1 cut(s)	48
CviAII	CATG	3 cut(s)	332, 659, 888
CviQI	GTAC	4 cut(s)	400, 451, 458, 984
DdeI	CTNAG	3 cut(s)	233, 836, 1169
DpnI	GATC	4 cut(s)	26, 255, 771, 878
DpnII	GATC	4 cut(s)	24, 253, 769, 876
EaeI	YGGCCR	3 cut(s)	158, 655, 781
EagI	CGGCCG	1 cut(s)	158
EciI	GGCGGA	1 cut(s)	30
Ecl136II	GAGCTC	2 cut(s)	290, 852
EclXI	CGGCCG	1 cut(s)	158
Eco130I	CCWWGG	2 cut(s)	658, 1226
Eco24I	GRGCYC	3 cut(s)	37, 292, 854
Eco47I	GGWCC	1 cut(s)	917
Eco47III	AGCGCT	1 cut(s)	231
Eco52I	CGGCCG	1 cut(s)	158
Eco53kI	GAGCTC	2 cut(s)	290, 852
Eco57I	CTGAAG	1 cut(s)	83
Eco88I	CYCGRG	2 cut(s)	36, 285
EcoICRI	GAGCTC	2 cut(s)	290, 852
EcoRII	CCWGG	3 cut(s)	279, 523, 736
EcoT14I	CCWWGG	2 cut(s)	658, 1226
EcoT38I	GRGCYC	3 cut(s)	37, 292, 854
ErhI	CCWWGG	2 cut(s)	658, 1226
FaeI	CATG	3 cut(s)	335, 662, 891
FalI	AAGNNNNNCTT	2 cut(s)	1082, 1114
FaqI	GGGAC	2 cut(s)	398, 990
FatI	CATG	3 cut(s)	331, 658, 887
FauI	CCCGC	2 cut(s)	69, 400
FblI	GTMKAC	1 cut(s)	489
FokI	GGATG	5 cut(s)	333, 333, 805, 950, 1176
FriOI	GRGCYC	3 cut(s)	37, 292, 854
FspBI	CTAG	2 cut(s)	870, 1023
GlaI	GCGC	3 cut(s)	231, 336, 406
GsaI	CCCAGC	1 cut(s)	1011
GsuI	CTGGAG	1 cut(s)	720
HaeII	RGCGCY	1 cut(s)	233
HaeIII	GGCC	4 cut(s)	160, 242, 657, 783
HapII	CCGG	4 cut(s)	49, 161, 213, 338
HhaI	GCGC	3 cut(s)	232, 337, 407
Hin1II	CATG	3 cut(s)	335, 662, 891
Hin6I	GCGC	3 cut(s)	230, 335, 405
HinP1I	GCGC	3 cut(s)	230, 335, 405
HpaII	CCGG	4 cut(s)	49, 161, 213, 338
HphI	GGTGA	2 cut(s)	539, 855
Hpy166II	GTNNAC	5 cut(s)	270, 490, 788, 1016, 1120
Hpy188I	TCNGA	4 cut(s)	153, 187, 856, 906
Hpy188III	TCNNGA	6 cut(s)	74, 224, 830, 935, 949, 1193
Hpy8I	GTNNAC	5 cut(s)	270, 490, 788, 1016, 1120
Hpy99I	CGWCG	2 cut(s)	191, 205
HpyAV	CCTTC	1 cut(s)	876
HpyCH4III	ACNGT	4 cut(s)	194, 450, 536, 777
HpyCH4IV	ACGT	1 cut(s)	200
HpyCH4V	TGCA	5 cut(s)	542, 729, 818, 1016, 1180
HpyF10VI	GCNNNNNNNGC	8 cut(s)	103, 109, 112, 115, 118, 124, 154, 404
HpyF3I	CTNAG	3 cut(s)	233, 836, 1169
HpySE526I	ACGT	1 cut(s)	200
Hsp92II	CATG	3 cut(s)	335, 662, 891
HspAI	GCGC	3 cut(s)	230, 335, 405
Kzo9I	GATC	4 cut(s)	24, 253, 769, 876
LmnI	GCTCC	3 cut(s)	587, 763, 849
LweI	GCATC	5 cut(s)	157, 529, 610, 827, 928
MaeI	CTAG	2 cut(s)	870, 1023
MaeII	ACGT	1 cut(s)	200
MaeIII	GTNAC	4 cut(s)	8, 342, 434, 1212
MalI	GATC	4 cut(s)	26, 255, 771, 878
MboI	GATC	4 cut(s)	24, 253, 769, 876
MflI	RGATCY	1 cut(s)	876
MhlI	GDGCHC	5 cut(s)	37, 292, 768, 854, 1018
MlsI	TGGCCA	1 cut(s)	657
MluCI	AATT	3 cut(s)	247, 824, 1138
MluNI	TGGCCA	1 cut(s)	657
MlyI	GAGTC	8 cut(s)	191, 322, 431, 554, 637, 681, 940, 964
MmeI	TCCRAC	4 cut(s)	210, 644, 854, 944
Mox20I	TGGCCA	1 cut(s)	657
MroXI	GAANNNNTTC	1 cut(s)	50
MscI	TGGCCA	1 cut(s)	657
MseI	TTAA	3 cut(s)	425, 695, 977
Msp20I	TGGCCA	1 cut(s)	657
MspA1I	CMGCKG	2 cut(s)	1011, 1157
MspI	CCGG	4 cut(s)	49, 161, 213, 338
MspR9I	CCNGG	4 cut(s)	214, 281, 525, 738
MvaI	CCWGG	3 cut(s)	281, 525, 738
MvnI	CGCG	2 cut(s)	245, 407
MwoI	GCNNNNNNNGC	8 cut(s)	103, 109, 112, 115, 118, 124, 154, 404
NciI	CCSGG	1 cut(s)	214
NcoI	CCATGG	1 cut(s)	658
NdeII	GATC	4 cut(s)	24, 253, 769, 876
NlaIII	CATG	3 cut(s)	335, 662, 891
NlaIV	GGNNCC	4 cut(s)	260, 703, 1096, 1106
NmuCI	GTSAC	3 cut(s)	8, 434, 1212
PaeR7I	CTCGAG	1 cut(s)	285
PdmI	GAANNNNTTC	1 cut(s)	50
PfeI	GAWTC	4 cut(s)	70, 377, 805, 1124
Pfl23II	CGTACG	1 cut(s)	399
PflFI	GACNNNGTC	1 cut(s)	440
PflMI	CCANNNNNTGG	1 cut(s)	1067
PinAI	ACCGGT	1 cut(s)	48
Ple19I	CGATCG	1 cut(s)	27
PleI	GAGTC	8 cut(s)	190, 322, 431, 553, 636, 680, 939, 964
PpsI	GAGTC	8 cut(s)	190, 322, 431, 553, 636, 680, 939, 964
Psp124BI	GAGCTC	2 cut(s)	292, 854
Psp6I	CCWGG	3 cut(s)	279, 523, 736
PspFI	CCCAGC	1 cut(s)	1007
PspGI	CCWGG	3 cut(s)	279, 523, 736
PspLI	CGTACG	1 cut(s)	399
PspN4I	GGNNCC	4 cut(s)	260, 703, 1096, 1106
PspPI	GGNCC	1 cut(s)	917
PspXI	VCTCGAGB	1 cut(s)	285
PsrI	GAACNNNNNNTAC	2 cut(s)	38, 70
PstNI	CAGNNNCTG	2 cut(s)	94, 934
PsuI	RGATCY	1 cut(s)	876
PsyI	GACNNNGTC	1 cut(s)	440
PvuI	CGATCG	1 cut(s)	27
PvuII	CAGCTG	1 cut(s)	1157
RsaI	GTAC	4 cut(s)	401, 452, 459, 985
RsaNI	GTAC	4 cut(s)	400, 451, 458, 984
SacI	GAGCTC	2 cut(s)	292, 854
SaqAI	TTAA	3 cut(s)	425, 695, 977
Sau3AI	GATC	4 cut(s)	24, 253, 769, 876
Sau96I	GGNCC	1 cut(s)	917
ScaI	AGTACT	1 cut(s)	452
SchI	GAGTC	8 cut(s)	191, 322, 431, 554, 637, 681, 940, 964
ScrFI	CCNGG	4 cut(s)	214, 281, 525, 738
SduI	GDGCHC	5 cut(s)	37, 292, 768, 854, 1018
SfaNI	GCATC	5 cut(s)	157, 529, 610, 827, 928
SfcI	CTRYAG	2 cut(s)	882, 912
Sfr274I	CTCGAG	1 cut(s)	285
SinI	GGWCC	1 cut(s)	917
SlaI	CTCGAG	1 cut(s)	285
SmlI	CTYRAG	3 cut(s)	263, 285, 706
SmoI	CTYRAG	3 cut(s)	263, 285, 706
Sse9I	AATT	3 cut(s)	247, 824, 1138
SsiI	CCGC	6 cut(s)	15, 62, 157, 243, 407, 1011
SspI	AATATT	2 cut(s)	640, 758
SspMI	CTAG	2 cut(s)	870, 1023
SstI	GAGCTC	2 cut(s)	292, 854
StyD4I	CCNGG	4 cut(s)	212, 279, 523, 736
StyI	CCWWGG	2 cut(s)	658, 1226
TaaI	ACNGT	4 cut(s)	194, 450, 536, 777
TaiI	ACGT	1 cut(s)	203
TaqI	TCGA	5 cut(s)	23, 73, 129, 286, 968
TaqII	GACCGA	1 cut(s)	17
TasI	AATT	3 cut(s)	247, 824, 1138
TatI	WGTACW	1 cut(s)	450
TauI	GCSGC	2 cut(s)	160, 245
TfiI	GAWTC	4 cut(s)	70, 377, 805, 1124
Tru1I	TTAA	3 cut(s)	425, 695, 977
Tru9I	TTAA	3 cut(s)	425, 695, 977
TscAI	CASTG	3 cut(s)	541, 583, 997
TseFI	GTSAC	3 cut(s)	8, 434, 1212
Tsp45I	GTSAC	3 cut(s)	8, 434, 1212
TspDTI	ATGAA	4 cut(s)	617, 729, 947, 1175
TspRI	CASTG	3 cut(s)	541, 583, 997
Tth111I	GACNNNGTC	1 cut(s)	440
Van91I	CCANNNNNTGG	1 cut(s)	1067
VneI	GTGCAC	1 cut(s)	1014
VpaK11BI	GGWCC	1 cut(s)	917
XapI	RAATTY	1 cut(s)	247
XhoI	CTCGAG	1 cut(s)	285
XmiI	GTMKAC	1 cut(s)	489
XmnI	GAANNNNTTC	1 cut(s)	50
XspI	CTAG	2 cut(s)	870, 1023
ZrmI	AGTACT	1 cut(s)	452

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.