MD16G1159600.v1.1

Protein of unknown function (DUF789)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
OG0009360
Physical Location & Seq
Reverse (-)
12939151 .. 12942568
3418 bp
Loading structure...
UTR
Exon/CDS
Intron
MD16G1159600.v1.1.491

Sequence Viewer

Length: 1182 bp
ATGTCAGGCGTTTCGATTGCTCGGATTCGGGGAGAGAATCGGTTCTACAACCCACCAGCTGTACGACAACGGCAGCAGCAGCAGCGACAAAAGCTACAGGAAGAGAAGCATCAGAGGCAGTCGGTGGATTCAGACGACTGTGCGACTTCATACAGTTCTGGTTCGGGTCGGGAAGTGGTGAGCGATGCTACGAATTTGGATCGATTTTTGGAGTACACCGCACCTGTGGTTGTGGCCCAGTATTTTCCGAAGACAAGTGTGAAGGGATGGAGGACTCGTGAGTCAGAATTACATCCATACTTTGTGCTTGGAGATTTATGGGAATCCTTCAAAGAGTGGAGCGCTTACGGTGCGGGTGTTCCTCTTTTGTTGAATGGGAGTGACTCTGTTATCCAGTACTATGTTCCTTACTTGTCCGCTATTCAGCTCTATGTAGACCCATCAAAGCCATCAACGAGAACAAGGAGGCCTGGTGATGAGAGTGATGCAGAGTCATCGAGGGAGACAAGTAGCAACGGCAGCAGTGATTATGGAACAGAAAGAGGATTTAACAATGTTCCTTATAGTGCTTTAAGTTGGCAGAATGCTGCAGATGTAAATGGCCATGGTTGGAATAAAACCTTCCCGAGAAATAAACCCTTAAATGGTTCCTCAAGTGATGAAAGTGGTGAGGCTTGCAACCCTAGTCAGCTTATATTTCATTATATGGAGCATGATCAACCATTTGGTCGTGAACCTTTGGCTGATAAGATTTCAGTTCTTGCATCTCAATTTCCAGAGCTGAGGACATACAGGAGCTGTGATTTATCACCTTCTAGTTGGCTTTCTGTAGCCTGGTATCCGATATATAGGATACCTACAGGTCCAACATTGCAGAGCCTAGATGCATGCTTCTTGACCTTTCATTCCCTATCGACTCCCACAAAGGGTGCAAGCGCTGATGAACTTCAGTGTGGTGGTGCACGAGCTAGAGACAACCAAAATGCCGATTTCAAACTATCATTGCCAATCTTTGGGCTTGCTTCGTACAAGTTCAAGGTTTCCTTTTGGAATCCTAATGGAGTTTACAAATGCCAGAAGGCTGATTCTCTATTGCGAGCAGCTGACAACTGGCTCAGGCGATTGCAAGTTAATCATCCTGATTTCAATTTCTTTGTGTCGCACAGCATTCCAAAGAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF789

Protein Analysis

394

Amino Acids

44.26

Weight (kDa)

7.63

Isoelectric Point (pI)

45.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF789 PF05623 64 - 385 6.1e-105 Protein of unknown function (DUF789)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 280
AccB7I CCANNNNNTGG 1 cut(s) 1013
AccI GTMKAC 1 cut(s) 435
AciI CCGC 3 cut(s) 219, 353, 417
AclWI GGATC 1 cut(s) 207
AcoI YGGCCR 1 cut(s) 601
AcsI RAATTY 1 cut(s) 193
AcuI CTGAAG 1 cut(s) 932
AfaI GTAC 4 cut(s) 63, 215, 398, 1028
AfeI AGCGCT 2 cut(s) 343, 937
AfiI CCNNNNNNNGG 3 cut(s) 644, 926, 1013
AgsI TTSAA 5 cut(s) 331, 373, 994, 1036, 1147
AjnI CCWGG 2 cut(s) 469, 833
AluBI AGCT 8 cut(s) 59, 94, 427, 691, 781, 798, 968, 1103
AluI AGCT 8 cut(s) 59, 94, 427, 691, 781, 798, 968, 1103
Alw21I GWGCWC 1 cut(s) 964
Alw26I GTCTC 2 cut(s) 497, 966
Alw44I GTGCAC 1 cut(s) 960
AlwI GGATC 1 cut(s) 207
AlwNI CAGNNNCTG 1 cut(s) 798
Ama87I CYCGRG 1 cut(s) 625
Aor51HI AGCGCT 2 cut(s) 343, 937
AoxI GGCC 3 cut(s) 234, 467, 601
ApaLI GTGCAC 1 cut(s) 960
ApeKI GCWGC 7 cut(s) 73, 76, 79, 82, 519, 587, 1100
ApoI RAATTY 1 cut(s) 193
Asp700I GAANNNNTTC 1 cut(s) 41
AspLEI GCGC 2 cut(s) 344, 938
AspS9I GGNCC 2 cut(s) 235, 863
AsuHPI GGTGA 4 cut(s) 190, 485, 680, 801
AvaI CYCGRG 1 cut(s) 625
AvaII GGWCC 1 cut(s) 863
BaeGI GKGCMC 1 cut(s) 964
BalI TGGCCA 1 cut(s) 603
BauI CACGAG 2 cut(s) 276, 963
BbsI GAAGAC 1 cut(s) 257
Bbv12I GWGCWC 1 cut(s) 964
BbvCI CCTCAGC 1 cut(s) 782
BbvI GCAGC 7 cut(s) 85, 88, 91, 94, 531, 574, 1112
BccI CCATC 3 cut(s) 261, 448, 457
BceAI ACGGC 2 cut(s) 86, 532
BcgI CGANNNNNNTGC 2 cut(s) 477, 511
BciT130I CCWGG 2 cut(s) 471, 835
BciVI GTATCC 2 cut(s) 846, 849
BclI TGATCA 1 cut(s) 715
BcoDI GTCTC 2 cut(s) 497, 966
BfaI CTAG 4 cut(s) 684, 816, 881, 969
BfmI CTRYAG 4 cut(s) 95, 588, 828, 858
BfoI RGCGCY 2 cut(s) 345, 939
BfuI GTATCC 2 cut(s) 846, 849
BisI GCNGC 7 cut(s) 74, 77, 80, 83, 520, 588, 1101
BlsI GCNGC 7 cut(s) 75, 78, 81, 84, 521, 589, 1102
BmcAI AGTACT 1 cut(s) 398
Bme1390I CCNGG 2 cut(s) 471, 835
Bme18I GGWCC 1 cut(s) 863
BmeT110I CYCGRG 1 cut(s) 625
BmgT120I GGNCC 2 cut(s) 235, 863
BmiI GGNNCC 1 cut(s) 649
BmrFI CCNGG 2 cut(s) 471, 835
BmrI ACTGGG 1 cut(s) 232
BmsI GCATC 5 cut(s) 118, 175, 475, 773, 874
BmuI ACTGGG 1 cut(s) 232
BpiI GAAGAC 1 cut(s) 257
Bpu10I CCTNAGC 2 cut(s) 782, 1115
BpuEI CTTGAG 1 cut(s) 637
Bsa29I ATCGAT 1 cut(s) 202
BsaJI CCNNGG 1 cut(s) 604
BsaXI ACNNNNNCTCC 4 cut(s) 262, 292, 457, 487
Bsc4I CCNNNNNNNGG 3 cut(s) 644, 926, 1013
Bse1I ACTGG 3 cut(s) 238, 394, 1115
Bse3DI GCAATG 2 cut(s) 869, 1001
BseBI CCWGG 2 cut(s) 471, 835
BseCI ATCGAT 1 cut(s) 202
BseDI CCNNGG 1 cut(s) 604
BseGI GGATG 3 cut(s) 272, 292, 1135
BseLI CCNNNNNNNGG 3 cut(s) 644, 926, 1013
BseMI GCAATG 2 cut(s) 869, 1001
BseMII CTCAG 2 cut(s) 773, 1129
BseNI ACTGG 3 cut(s) 238, 394, 1115
BseSI GKGCMC 1 cut(s) 964
BseXI GCAGC 7 cut(s) 85, 88, 91, 94, 531, 574, 1112
BshFI GGCC 3 cut(s) 236, 469, 603
BshVI ATCGAT 1 cut(s) 202
BsiHKAI GWGCWC 1 cut(s) 964
BsiHKCI CYCGRG 1 cut(s) 625
BslI CCNNNNNNNGG 3 cut(s) 644, 926, 1013
BsmAI GTCTC 2 cut(s) 497, 966
BsmI GAATGC 2 cut(s) 589, 1167
BsnI GGCC 3 cut(s) 236, 469, 603
BsoBI CYCGRG 1 cut(s) 625
Bsp1286I GDGCHC 1 cut(s) 964
Bsp143I GATC 2 cut(s) 199, 715
Bsp19I CCATGG 1 cut(s) 604
BspACI CCGC 3 cut(s) 219, 353, 417
BspANI GGCC 3 cut(s) 236, 469, 603
BspCNI CTCAG 2 cut(s) 774, 1128
BspDI ATCGAT 1 cut(s) 202
BspLI GGNNCC 1 cut(s) 649
BspMAI CTGCAG 1 cut(s) 592
BspPI GGATC 1 cut(s) 207
BsrDI GCAATG 2 cut(s) 869, 1001
BsrI ACTGG 3 cut(s) 238, 394, 1115
BssECI CCNNGG 1 cut(s) 604
BssMI GATC 2 cut(s) 199, 715
BssSI CACGAG 2 cut(s) 276, 963
BssT1I CCWWGG 1 cut(s) 604
Bst2BI CACGAG 2 cut(s) 276, 963
Bst2UI CCWGG 2 cut(s) 471, 835
Bst4CI ACNGT 3 cut(s) 140, 155, 350
Bst6I CTCTTC 1 cut(s) 96
BstC8I GCNNGC 5 cut(s) 676, 889, 934, 1020, 1098
BstDEI CTNAG 2 cut(s) 782, 1115
BstDSI CCRYGG 1 cut(s) 604
BstF5I GGATG 3 cut(s) 272, 292, 1135
BstH2I RGCGCY 2 cut(s) 345, 939
BstHHI GCGC 2 cut(s) 344, 938
BstKTI GATC 2 cut(s) 202, 718
BstMAI GTCTC 2 cut(s) 497, 966
BstMBI GATC 2 cut(s) 199, 715
BstMWI GCNNNNNNNGC 6 cut(s) 79, 82, 91, 115, 350, 519
BstNI CCWGG 2 cut(s) 471, 835
BstNSI RCATGY 1 cut(s) 891
BstSCI CCNGG 2 cut(s) 469, 833
BstSFI CTRYAG 4 cut(s) 95, 588, 828, 858
BstSLI GKGCMC 1 cut(s) 964
BstV1I GCAGC 7 cut(s) 85, 88, 91, 94, 531, 574, 1112
BstV2I GAAGAC 1 cut(s) 257
Bsu15I ATCGAT 1 cut(s) 202
BsuI GTATCC 2 cut(s) 846, 849
BsuRI GGCC 3 cut(s) 236, 469, 603
BsuTUI ATCGAT 1 cut(s) 202
BtgI CCRYGG 1 cut(s) 604
BtgZI GCGATG 1 cut(s) 198
BtsCI GGATG 3 cut(s) 272, 292, 1135
BtsI GCAGTG 1 cut(s) 529
BtsIMutI CAGTG 2 cut(s) 529, 956
Cac8I GCNNGC 5 cut(s) 676, 889, 934, 1020, 1098
CaiI CAGNNNCTG 1 cut(s) 798
CfoI GCGC 2 cut(s) 344, 938
Cfr13I GGNCC 2 cut(s) 235, 863
ClaI ATCGAT 1 cut(s) 202
Csp6I GTAC 4 cut(s) 62, 214, 397, 1027
CviAII CATG 3 cut(s) 605, 713, 888
CviQI GTAC 4 cut(s) 62, 214, 397, 1027
DdeI CTNAG 2 cut(s) 782, 1115
DpnI GATC 2 cut(s) 201, 717
DpnII GATC 2 cut(s) 199, 715
DrdI GACNNNNNNGTC 1 cut(s) 280
DseDI GACNNNNNNGTC 1 cut(s) 280
EaeI YGGCCR 1 cut(s) 601
Eam1104I CTCTTC 1 cut(s) 96
EarI CTCTTC 1 cut(s) 96
Eco130I CCWWGG 1 cut(s) 604
Eco147I AGGCCT 1 cut(s) 469
Eco47I GGWCC 1 cut(s) 863
Eco47III AGCGCT 2 cut(s) 343, 937
Eco57I CTGAAG 1 cut(s) 932
Eco88I CYCGRG 1 cut(s) 625
EcoRII CCWGG 2 cut(s) 469, 833
EcoT14I CCWWGG 1 cut(s) 604
EcoT22I ATGCAT 1 cut(s) 889
ErhI CCWWGG 1 cut(s) 604
FaeI CATG 3 cut(s) 608, 716, 891
FalI AAGNNNNNCTT 2 cut(s) 1028, 1060
FatI CATG 3 cut(s) 604, 712, 887
FauI CCCGC 1 cut(s) 346
FbaI TGATCA 1 cut(s) 715
FblI GTMKAC 1 cut(s) 435
Fnu4HI GCNGC 7 cut(s) 74, 77, 80, 83, 520, 588, 1101
FokI GGATG 3 cut(s) 279, 279, 1122
Fsp4HI GCNGC 7 cut(s) 74, 77, 80, 83, 520, 588, 1101
FspBI CTAG 4 cut(s) 684, 816, 881, 969
GlaI GCGC 2 cut(s) 343, 937
GluI GCNGC 7 cut(s) 74, 77, 80, 83, 520, 588, 1101
HaeII RGCGCY 2 cut(s) 345, 939
HaeIII GGCC 3 cut(s) 236, 469, 603
HhaI GCGC 2 cut(s) 344, 938
Hin1II CATG 3 cut(s) 608, 716, 891
Hin6I GCGC 2 cut(s) 342, 936
HinP1I GCGC 2 cut(s) 342, 936
HphI GGTGA 4 cut(s) 190, 485, 680, 801
Hpy166II GTNNAC 5 cut(s) 216, 436, 734, 962, 1066
Hpy188I TCNGA 6 cut(s) 24, 114, 133, 249, 286, 843
Hpy188III TCNNGA 7 cut(s) 170, 278, 625, 731, 776, 895, 1139
Hpy8I GTNNAC 5 cut(s) 216, 436, 734, 962, 1066
HpyAV CCTTC 5 cut(s) 256, 337, 631, 822, 1072
HpyCH4III ACNGT 3 cut(s) 140, 155, 350
HpyCH4V TGCA 9 cut(s) 488, 590, 678, 764, 874, 887, 932, 962, 1126
HpyF10VI GCNNNNNNNGC 6 cut(s) 79, 82, 91, 115, 350, 519
HpyF3I CTNAG 2 cut(s) 782, 1115
Hsp92II CATG 3 cut(s) 608, 716, 891
HspAI GCGC 2 cut(s) 342, 936
Ksp22I TGATCA 1 cut(s) 715
Kzo9I GATC 2 cut(s) 199, 715
LmnI GCTCC 3 cut(s) 339, 709, 795
Lsp1109I GCAGC 7 cut(s) 85, 88, 91, 94, 531, 574, 1112
LweI GCATC 5 cut(s) 118, 175, 475, 773, 874
MaeI CTAG 4 cut(s) 684, 816, 881, 969
MaeIII GTNAC 1 cut(s) 380
MalI GATC 2 cut(s) 201, 717
MboI GATC 2 cut(s) 199, 715
MboII GAAGA 2 cut(s) 113, 262
MhlI GDGCHC 1 cut(s) 964
MlsI TGGCCA 1 cut(s) 603
MluCI AATT 4 cut(s) 193, 287, 770, 1147
MluNI TGGCCA 1 cut(s) 603
MlyI GAGTC 5 cut(s) 268, 290, 377, 500, 910
MmeI TCCRAC 2 cut(s) 590, 890
Mox20I TGGCCA 1 cut(s) 603
Mph1103I ATGCAT 1 cut(s) 889
MroXI GAANNNNTTC 1 cut(s) 41
MscI TGGCCA 1 cut(s) 603
MseI TTAA 4 cut(s) 549, 572, 641, 1131
Msp20I TGGCCA 1 cut(s) 603
MspA1I CMGCKG 2 cut(s) 59, 1103
MspR9I CCNGG 2 cut(s) 471, 835
Mva1269I GAATGC 2 cut(s) 589, 1167
MvaI CCWGG 2 cut(s) 471, 835
MwoI GCNNNNNNNGC 6 cut(s) 79, 82, 91, 115, 350, 519
NcoI CCATGG 1 cut(s) 604
NdeII GATC 2 cut(s) 199, 715
NlaIII CATG 3 cut(s) 608, 716, 891
NlaIV GGNNCC 1 cut(s) 649
NmuCI GTSAC 1 cut(s) 380
NsiI ATGCAT 1 cut(s) 889
NspI RCATGY 1 cut(s) 891
PaeI GCATGC 1 cut(s) 891
PceI AGGCCT 1 cut(s) 469
PctI GAATGC 2 cut(s) 589, 1167
PdmI GAANNNNTTC 1 cut(s) 41
PfeI GAWTC 6 cut(s) 25, 37, 128, 323, 1051, 1085
PflMI CCANNNNNTGG 1 cut(s) 1013
PkrI GCNGC 7 cut(s) 75, 78, 81, 84, 521, 589, 1102
PleI GAGTC 5 cut(s) 268, 289, 377, 499, 910
PpsI GAGTC 5 cut(s) 268, 289, 377, 499, 910
Psp6I CCWGG 2 cut(s) 469, 833
PspGI CCWGG 2 cut(s) 469, 833
PspN4I GGNNCC 1 cut(s) 649
PspPI GGNCC 2 cut(s) 235, 863
PstI CTGCAG 1 cut(s) 592
PstNI CAGNNNCTG 1 cut(s) 798
PvuII CAGCTG 2 cut(s) 59, 1103
RsaI GTAC 4 cut(s) 63, 215, 398, 1028
RsaNI GTAC 4 cut(s) 62, 214, 397, 1027
SaqAI TTAA 4 cut(s) 549, 572, 641, 1131
SatI GCNGC 7 cut(s) 74, 77, 80, 83, 520, 588, 1101
Sau3AI GATC 2 cut(s) 199, 715
Sau96I GGNCC 2 cut(s) 235, 863
ScaI AGTACT 1 cut(s) 398
SchI GAGTC 5 cut(s) 268, 290, 377, 500, 910
ScrFI CCNGG 2 cut(s) 471, 835
SduI GDGCHC 1 cut(s) 964
SfaNI GCATC 5 cut(s) 118, 175, 475, 773, 874
SfcI CTRYAG 4 cut(s) 95, 588, 828, 858
SinI GGWCC 1 cut(s) 863
SmlI CTYRAG 1 cut(s) 652
SmoI CTYRAG 1 cut(s) 652
SphI GCATGC 1 cut(s) 891
Sse9I AATT 4 cut(s) 193, 287, 770, 1147
SseBI AGGCCT 1 cut(s) 469
SsiI CCGC 3 cut(s) 219, 353, 417
SspMI CTAG 4 cut(s) 684, 816, 881, 969
StuI AGGCCT 1 cut(s) 469
StyD4I CCNGG 2 cut(s) 469, 833
StyI CCWWGG 1 cut(s) 604
TaaI ACNGT 3 cut(s) 140, 155, 350
TaqI TCGA 4 cut(s) 14, 202, 497, 914
TasI AATT 4 cut(s) 193, 287, 770, 1147
TatI WGTACW 2 cut(s) 213, 396
TfiI GAWTC 6 cut(s) 25, 37, 128, 323, 1051, 1085
Tru1I TTAA 4 cut(s) 549, 572, 641, 1131
Tru9I TTAA 4 cut(s) 549, 572, 641, 1131
TscAI CASTG 2 cut(s) 529, 956
TseFI GTSAC 1 cut(s) 380
TseI GCWGC 7 cut(s) 73, 76, 79, 82, 519, 587, 1100
Tsp45I GTSAC 1 cut(s) 380
TspDTI ATGAA 5 cut(s) 138, 675, 689, 893, 957
TspRI CASTG 2 cut(s) 529, 956
Van91I CCANNNNNTGG 1 cut(s) 1013
VneI GTGCAC 1 cut(s) 960
VpaK11BI GGWCC 1 cut(s) 863
XapI RAATTY 1 cut(s) 193
XceI RCATGY 1 cut(s) 891
XmiI GTMKAC 1 cut(s) 435
XmnI GAANNNNTTC 1 cut(s) 41
XspI CTAG 4 cut(s) 684, 816, 881, 969
ZrmI AGTACT 1 cut(s) 398
Zsp2I ATGCAT 1 cut(s) 889
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.