FvH4_4g19180

Protein of unknown function (DUF789)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0009360
Physical Location & Seq
Forward (+)
22895463 .. 22898869
3407 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g19180.t2

Sequence Viewer

Length: 1203 bp
ATGTCTGGCGGCGGAGTTTCGATCGGTCGGGCTCGGGGCGAGAACCGGTTCTACAACCCGCCCCCGATTCGAGAACGACAACAACAGCAACTTCTTCAGAGACAGAAGCTGGAACAGGAGAAGAAACAGCAGCGGCAGCAGCAGGTGTCGGTTTCGGTGGTCGTGGAGTCCGAGGACTGTGCCACGTCGCATAGTTCTGGGTCGGGTCGGGAAGCACTCAGCGAGGCCGCCAATTTAGATCGGTTCATTGAGTTCACCACGCCCTTGGCTCGTGCTCAGTTTTTGCCCAAGACGAGTATCAGGGGATGGAGGACTCATGAGCCAGAGTCACATCCTTTTTTTGTGCTTGGAGATTTATGGGAATCTTTCAAGGAGTGGAGCGCGTACGGAGCTGGTGTCCCTCTTTTGTTAAATGGGAGTGACTCTGTCATACAGTACTATGTTCCTTACTTGTCTGCCATTCAGCTCTATGTAGACCCATCAAAGCCTCCCACAAGGATAAGTGATGCAGAGTCATCGAGGGAGACAAGTAGTGATGGCAGCAGTGACTATGGAGCAGAAAGACGTATAAATGGTGTTGTTGATAATGCTTGGAGTCGGCAGAATATTGCTGATGTAAATGGCCTTGGTTGGAATAGAGTCGCACCAAGAGATAAACCCTTAACTGGTTCCTCTAGTGATGAAAGTGAGATTTGCAACCCTCCTGGTCATCTTGTATTTCAATATTTGGAGCACGATCAACCGTTTGGTCGTGAACCTTTGGCTGATAAGATTCAAGTTCTCGCATCCCAATTTCCAGAGCTGAGGACTTACAAGAGCTGTGATTTATCACCTTCTAGTTGGATCTCTGTAGCATGGTATCCCATATATCGGATACCTACAGGTCCAACATTACAGAGCTTGGATGCTTGTTTCTTGACCTTTCATTCCTTGTCCACTTCCTTAAAAGGTACAAGCACTGATAGGCTCCGTCCCAGCAGTGCACGACCTAGAGAGATTCAAAATGCCAACTTCAAACTCTCGTTGCCAACCTTTGGATTGGCTTCCTACAAGTTCAAGGGTTCCTTTTGGAACCCTAATGGAGTCTACGAATCTCAGAAGGCAAATTCTCTGTTGCGAGCAGCTGAAAACTGGCTTAGGCTATTGCATGTCCATCATCCTGACTTTAACTTCTTTGTGTCGCACAATACACCAAGGAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF789

Protein Analysis

401

Amino Acids

45.04

Weight (kDa)

8.26

Isoelectric Point (pI)

45.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF789 PF05623 77 - 398 3e-106 Protein of unknown function (DUF789)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 133
Acc36I ACCTGC 1 cut(s) 133
AccB7I CCANNNNNTGG 1 cut(s) 1034
AccI GTMKAC 2 cut(s) 474, 1086
AccII CGCG 1 cut(s) 383
AciI CCGC 5 cut(s) 9, 12, 59, 133, 228
AclWI GGATC 1 cut(s) 851
AcsI RAATTY 1 cut(s) 1105
AcuI CTGAAG 1 cut(s) 80
AfaI GTAC 3 cut(s) 386, 437, 952
AfiI CCNNNNNNNGG 3 cut(s) 665, 870, 1034
AgeI ACCGGT 1 cut(s) 45
AgsI TTSAA 6 cut(s) 370, 722, 776, 1001, 1015, 1057
AjiI CACGTC 1 cut(s) 186
AjnI CCWGG 1 cut(s) 703
AluBI AGCT 7 cut(s) 109, 392, 466, 802, 819, 900, 1124
AluI AGCT 7 cut(s) 109, 392, 466, 802, 819, 900, 1124
Alw21I GWGCWC 3 cut(s) 277, 735, 985
Alw26I GTCTC 2 cut(s) 94, 518
Alw44I GTGCAC 1 cut(s) 981
AlwI GGATC 1 cut(s) 851
AlwNI CAGNNNCTG 1 cut(s) 109
Ama87I CYCGRG 1 cut(s) 33
AoxI GGCC 2 cut(s) 225, 622
ApaLI GTGCAC 1 cut(s) 981
ApeKI GCWGC 5 cut(s) 130, 136, 139, 540, 1121
ApoI RAATTY 1 cut(s) 1105
AsiGI ACCGGT 1 cut(s) 45
Asp700I GAANNNNTTC 1 cut(s) 47
AspLEI GCGC 1 cut(s) 383
AspS9I GGNCC 1 cut(s) 884
AsuHPI GGTGA 2 cut(s) 247, 822
AvaI CYCGRG 1 cut(s) 33
AvaII GGWCC 1 cut(s) 884
BaeGI GKGCMC 1 cut(s) 985
BanII GRGCYC 1 cut(s) 34
BauI CACGAG 1 cut(s) 270
Bbv12I GWGCWC 3 cut(s) 277, 735, 985
BbvCI CCTCAGC 1 cut(s) 803
BbvI GCAGC 5 cut(s) 142, 148, 151, 552, 1133
BccI CCATC 4 cut(s) 300, 487, 530, 1161
BcgI CGANNNNNNTGC 4 cut(s) 161, 195, 498, 532
BciT130I CCWGG 1 cut(s) 705
BciVI GTATCC 2 cut(s) 867, 870
BcoDI GTCTC 2 cut(s) 94, 518
BfaI CTAG 3 cut(s) 675, 837, 990
BfmI CTRYAG 2 cut(s) 849, 879
BfuAI ACCTGC 1 cut(s) 133
BfuI GTATCC 2 cut(s) 867, 870
BisI GCNGC 8 cut(s) 10, 131, 134, 137, 140, 228, 541, 1122
BlsI GCNGC 8 cut(s) 11, 132, 135, 138, 141, 229, 542, 1123
BmcAI AGTACT 1 cut(s) 437
Bme1390I CCNGG 1 cut(s) 705
Bme18I GGWCC 1 cut(s) 884
BmeT110I CYCGRG 1 cut(s) 33
BmgBI CACGTC 1 cut(s) 186
BmgT120I GGNCC 1 cut(s) 884
BmiI GGNNCC 4 cut(s) 670, 968, 1063, 1073
BmrFI CCNGG 1 cut(s) 705
BmsI GCATC 3 cut(s) 496, 794, 895
Bpu10I CCTNAGC 2 cut(s) 803, 1136
BsaJI CCNNGG 4 cut(s) 171, 264, 625, 1193
BsaWI WCCGGW 1 cut(s) 45
BsaXI ACNNNNNCTCC 2 cut(s) 381, 411
Bsc4I CCNNNNNNNGG 3 cut(s) 665, 870, 1034
Bse118I RCCGGY 1 cut(s) 45
Bse1I ACTGG 2 cut(s) 670, 1136
BseBI CCWGG 1 cut(s) 705
BseDI CCNNGG 4 cut(s) 171, 264, 625, 1193
BseGI GGATG 5 cut(s) 311, 331, 785, 910, 1156
BseLI CCNNNNNNNGG 3 cut(s) 665, 870, 1034
BseMII CTCAG 4 cut(s) 232, 290, 794, 1109
BseNI ACTGG 2 cut(s) 670, 1136
BseSI GKGCMC 1 cut(s) 985
BseXI GCAGC 5 cut(s) 142, 148, 151, 552, 1133
BseYI CCCAGC 1 cut(s) 974
Bsh1236I CGCG 1 cut(s) 383
Bsh1285I CGRYCG 2 cut(s) 24, 28
BshFI GGCC 2 cut(s) 227, 624
BshTI ACCGGT 1 cut(s) 45
BsiEI CGRYCG 2 cut(s) 24, 28
BsiHKAI GWGCWC 3 cut(s) 277, 735, 985
BsiHKCI CYCGRG 1 cut(s) 33
BsiSI CCGG 1 cut(s) 46
BsiWI CGTACG 1 cut(s) 384
BslFI GGGAC 2 cut(s) 383, 957
BslI CCNNNNNNNGG 3 cut(s) 665, 870, 1034
BsmAI GTCTC 2 cut(s) 94, 518
BsmFI GGGAC 2 cut(s) 383, 957
BsnI GGCC 2 cut(s) 227, 624
BsoBI CYCGRG 1 cut(s) 33
Bsp1286I GDGCHC 4 cut(s) 34, 277, 735, 985
Bsp143I GATC 4 cut(s) 21, 238, 736, 843
BspACI CCGC 5 cut(s) 9, 12, 59, 133, 228
BspANI GGCC 2 cut(s) 227, 624
BspCNI CTCAG 4 cut(s) 231, 289, 795, 1108
BspFNI CGCG 1 cut(s) 383
BspHI TCATGA 1 cut(s) 316
BspLI GGNNCC 4 cut(s) 670, 968, 1063, 1073
BspMI ACCTGC 1 cut(s) 133
BspPI GGATC 1 cut(s) 851
BsrFI RCCGGY 1 cut(s) 45
BsrI ACTGG 2 cut(s) 670, 1136
BssAI RCCGGY 1 cut(s) 45
BssECI CCNNGG 4 cut(s) 171, 264, 625, 1193
BssMI GATC 4 cut(s) 21, 238, 736, 843
BssSI CACGAG 1 cut(s) 270
BssT1I CCWWGG 3 cut(s) 264, 625, 1193
Bst2BI CACGAG 1 cut(s) 270
Bst2UI CCWGG 1 cut(s) 705
Bst4CI ACNGT 3 cut(s) 179, 435, 744
BstC8I GCNNGC 1 cut(s) 1119
BstDEI CTNAG 5 cut(s) 218, 276, 803, 1095, 1136
BstF5I GGATG 5 cut(s) 311, 331, 785, 910, 1156
BstFNI CGCG 1 cut(s) 383
BstHHI GCGC 1 cut(s) 383
BstKTI GATC 4 cut(s) 24, 241, 739, 846
BstMAI GTCTC 2 cut(s) 94, 518
BstMBI GATC 4 cut(s) 21, 238, 736, 843
BstMCI CGRYCG 2 cut(s) 24, 28
BstMWI GCNNNNNNNGC 3 cut(s) 136, 139, 389
BstNI CCWGG 1 cut(s) 705
BstNSI RCATGY 1 cut(s) 1151
BstSCI CCNGG 1 cut(s) 703
BstSFI CTRYAG 2 cut(s) 849, 879
BstSLI GKGCMC 1 cut(s) 985
BstUI CGCG 1 cut(s) 383
BstV1I GCAGC 5 cut(s) 142, 148, 151, 552, 1133
BstX2I RGATCY 1 cut(s) 843
BstXI CCANNNNNNTGG 1 cut(s) 265
BstYI RGATCY 1 cut(s) 843
BsuI GTATCC 2 cut(s) 867, 870
BsuRI GGCC 2 cut(s) 227, 624
BtrI CACGTC 1 cut(s) 186
BtsCI GGATG 5 cut(s) 311, 331, 785, 910, 1156
BtsI GCAGTG 2 cut(s) 550, 985
BtsIMutI CAGTG 3 cut(s) 550, 957, 985
BveI ACCTGC 1 cut(s) 133
Cac8I GCNNGC 1 cut(s) 1119
CaiI CAGNNNCTG 1 cut(s) 109
CciI TCATGA 1 cut(s) 316
CfoI GCGC 1 cut(s) 383
Cfr10I RCCGGY 1 cut(s) 45
Cfr13I GGNCC 1 cut(s) 884
Csp6I GTAC 3 cut(s) 385, 436, 951
CspAI ACCGGT 1 cut(s) 45
CviAII CATG 3 cut(s) 317, 855, 1148
CviQI GTAC 3 cut(s) 385, 436, 951
DdeI CTNAG 5 cut(s) 218, 276, 803, 1095, 1136
DpnI GATC 4 cut(s) 23, 240, 738, 845
DpnII GATC 4 cut(s) 21, 238, 736, 843
EciI GGCGGA 1 cut(s) 27
Eco130I CCWWGG 3 cut(s) 264, 625, 1193
Eco24I GRGCYC 1 cut(s) 34
Eco47I GGWCC 1 cut(s) 884
Eco57I CTGAAG 1 cut(s) 80
Eco88I CYCGRG 1 cut(s) 33
EcoRII CCWGG 1 cut(s) 703
EcoT14I CCWWGG 3 cut(s) 264, 625, 1193
EcoT38I GRGCYC 1 cut(s) 34
ErhI CCWWGG 3 cut(s) 264, 625, 1193
FaeI CATG 3 cut(s) 320, 858, 1151
FalI AAGNNNNNCTT 2 cut(s) 1049, 1081
FaqI GGGAC 2 cut(s) 383, 957
FatI CATG 3 cut(s) 316, 854, 1147
FauI CCCGC 1 cut(s) 66
FblI GTMKAC 2 cut(s) 474, 1086
Fnu4HI GCNGC 8 cut(s) 10, 131, 134, 137, 140, 228, 541, 1122
FokI GGATG 5 cut(s) 318, 318, 772, 917, 1143
FriOI GRGCYC 1 cut(s) 34
Fsp4HI GCNGC 8 cut(s) 10, 131, 134, 137, 140, 228, 541, 1122
FspBI CTAG 3 cut(s) 675, 837, 990
GlaI GCGC 1 cut(s) 382
GluI GCNGC 8 cut(s) 10, 131, 134, 137, 140, 228, 541, 1122
GsaI CCCAGC 1 cut(s) 978
HaeIII GGCC 2 cut(s) 227, 624
HapII CCGG 1 cut(s) 46
HhaI GCGC 1 cut(s) 383
Hin1II CATG 3 cut(s) 320, 858, 1151
Hin6I GCGC 1 cut(s) 381
HinP1I GCGC 1 cut(s) 381
HpaII CCGG 1 cut(s) 46
HphI GGTGA 2 cut(s) 247, 822
Hpy166II GTNNAC 6 cut(s) 255, 475, 755, 936, 983, 1087
Hpy188I TCNGA 4 cut(s) 99, 172, 873, 1098
Hpy188III TCNNGA 7 cut(s) 71, 209, 317, 752, 797, 916, 1160
Hpy8I GTNNAC 6 cut(s) 255, 475, 755, 936, 983, 1087
Hpy99I CGWCG 1 cut(s) 190
HpyAV CCTTC 2 cut(s) 843, 1093
HpyCH4III ACNGT 3 cut(s) 179, 435, 744
HpyCH4IV ACGT 2 cut(s) 185, 565
HpyCH4V TGCA 4 cut(s) 509, 696, 983, 1147
HpyF10VI GCNNNNNNNGC 3 cut(s) 136, 139, 389
HpyF3I CTNAG 5 cut(s) 218, 276, 803, 1095, 1136
HpySE526I ACGT 2 cut(s) 185, 565
Hsp92II CATG 3 cut(s) 320, 858, 1151
HspAI GCGC 1 cut(s) 381
Kzo9I GATC 4 cut(s) 21, 238, 736, 843
LmnI GCTCC 5 cut(s) 378, 389, 554, 730, 972
Lsp1109I GCAGC 5 cut(s) 142, 148, 151, 552, 1133
LweI GCATC 3 cut(s) 496, 794, 895
MaeI CTAG 3 cut(s) 675, 837, 990
MaeII ACGT 2 cut(s) 185, 565
MaeIII GTNAC 3 cut(s) 327, 419, 545
MalI GATC 4 cut(s) 23, 240, 738, 845
MboI GATC 4 cut(s) 21, 238, 736, 843
MboII GAAGA 2 cut(s) 86, 133
MflI RGATCY 1 cut(s) 843
MhlI GDGCHC 4 cut(s) 34, 277, 735, 985
MluCI AATT 3 cut(s) 232, 791, 1105
MlyI GAGTC 8 cut(s) 176, 307, 335, 416, 521, 604, 648, 1092
MmeI TCCRAC 3 cut(s) 611, 821, 911
MroXI GAANNNNTTC 1 cut(s) 47
MseI TTAA 4 cut(s) 410, 662, 944, 1167
MspA1I CMGCKG 2 cut(s) 133, 1124
MspI CCGG 1 cut(s) 46
MspR9I CCNGG 1 cut(s) 705
MvaI CCWGG 1 cut(s) 705
MvnI CGCG 1 cut(s) 383
MwoI GCNNNNNNNGC 3 cut(s) 136, 139, 389
NdeII GATC 4 cut(s) 21, 238, 736, 843
NlaIII CATG 3 cut(s) 320, 858, 1151
NlaIV GGNNCC 4 cut(s) 670, 968, 1063, 1073
NmuCI GTSAC 3 cut(s) 327, 419, 545
NspI RCATGY 1 cut(s) 1151
PagI TCATGA 1 cut(s) 316
PaqCI CACCTGC 1 cut(s) 133
PcsI WCGNNNNNNNCGW 1 cut(s) 168
PdmI GAANNNNTTC 1 cut(s) 47
PfeI GAWTC 5 cut(s) 67, 362, 772, 997, 1091
Pfl23II CGTACG 1 cut(s) 384
PflFI GACNNNGTC 1 cut(s) 425
PflMI CCANNNNNTGG 1 cut(s) 1034
PinAI ACCGGT 1 cut(s) 45
PkrI GCNGC 8 cut(s) 11, 132, 135, 138, 141, 229, 542, 1123
Ple19I CGATCG 1 cut(s) 24
PleI GAGTC 8 cut(s) 175, 307, 334, 416, 520, 603, 647, 1091
PpsI GAGTC 8 cut(s) 175, 307, 334, 416, 520, 603, 647, 1091
Psp6I CCWGG 1 cut(s) 703
PspFI CCCAGC 1 cut(s) 974
PspGI CCWGG 1 cut(s) 703
PspLI CGTACG 1 cut(s) 384
PspN4I GGNNCC 4 cut(s) 670, 968, 1063, 1073
PspPI GGNCC 1 cut(s) 884
PsrI GAACNNNNNNTAC 2 cut(s) 35, 67
PstNI CAGNNNCTG 1 cut(s) 109
PsuI RGATCY 1 cut(s) 843
PsyI GACNNNGTC 1 cut(s) 425
PvuI CGATCG 1 cut(s) 24
PvuII CAGCTG 1 cut(s) 1124
RsaI GTAC 3 cut(s) 386, 437, 952
RsaNI GTAC 3 cut(s) 385, 436, 951
SaqAI TTAA 4 cut(s) 410, 662, 944, 1167
SatI GCNGC 8 cut(s) 10, 131, 134, 137, 140, 228, 541, 1122
Sau3AI GATC 4 cut(s) 21, 238, 736, 843
Sau96I GGNCC 1 cut(s) 884
ScaI AGTACT 1 cut(s) 437
SchI GAGTC 8 cut(s) 176, 307, 335, 416, 521, 604, 648, 1092
ScrFI CCNGG 1 cut(s) 705
SduI GDGCHC 4 cut(s) 34, 277, 735, 985
SfaNI GCATC 3 cut(s) 496, 794, 895
SfcI CTRYAG 2 cut(s) 849, 879
SinI GGWCC 1 cut(s) 884
Sse9I AATT 3 cut(s) 232, 791, 1105
SsiI CCGC 5 cut(s) 9, 12, 59, 133, 228
SspI AATATT 2 cut(s) 607, 725
SspMI CTAG 3 cut(s) 675, 837, 990
StyD4I CCNGG 1 cut(s) 703
StyI CCWWGG 3 cut(s) 264, 625, 1193
TaaI ACNGT 3 cut(s) 179, 435, 744
TaiI ACGT 2 cut(s) 188, 568
TaqI TCGA 3 cut(s) 20, 70, 518
TaqII GACCGA 1 cut(s) 14
TasI AATT 3 cut(s) 232, 791, 1105
TatI WGTACW 1 cut(s) 435
TauI GCSGC 3 cut(s) 12, 136, 230
TfiI GAWTC 5 cut(s) 67, 362, 772, 997, 1091
Tru1I TTAA 4 cut(s) 410, 662, 944, 1167
Tru9I TTAA 4 cut(s) 410, 662, 944, 1167
TscAI CASTG 3 cut(s) 550, 964, 985
TseFI GTSAC 3 cut(s) 327, 419, 545
TseI GCWGC 5 cut(s) 130, 136, 139, 540, 1121
Tsp45I GTSAC 3 cut(s) 327, 419, 545
TspDTI ATGAA 3 cut(s) 235, 696, 914
TspGWI ACGGA 2 cut(s) 402, 959
TspRI CASTG 3 cut(s) 550, 964, 985
Tth111I GACNNNGTC 1 cut(s) 425
Van91I CCANNNNNTGG 1 cut(s) 1034
VneI GTGCAC 1 cut(s) 981
VpaK11BI GGWCC 1 cut(s) 884
XapI RAATTY 1 cut(s) 1105
XceI RCATGY 1 cut(s) 1151
XmiI GTMKAC 2 cut(s) 474, 1086
XmnI GAANNNNTTC 1 cut(s) 47
XspI CTAG 3 cut(s) 675, 837, 990
ZrmI AGTACT 1 cut(s) 437
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.