Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0009360

Physical Location & Seq

Genomic Coordinates Reverse (-)

9687352 .. 9690054

Gene Structure 2703 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g13640.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1170 bp

ATGTCAGGCATTTCGATTGCTCGGATACGGGGAGAGAATCGCTTCTACAACCCGCCAGCTATACGGCAGCAGCAGCAGAGAAAAAAGCTAGAGGACGAGAAGCATCAGAGGCAGTCGGTGGATTCAGATGACTGTGCGACTTCATACAGTTCCGGTTCGGGTCGGGGAGTGATGAGCGATGATACGAATTTGGATCGGTTTTTGGAGTACACCACACCTGTGGTTGCGGCTCACTATTTTTCGAAGACAAGTGTGAGGGGATGGAGGAGTCGCGAGGCAGAATTACATCCATACTTTGTGCTTGGAGATTTATGGGAATCTTTCAAGGAGTGGAGCGCGTACGGTGCAGGTGTCCCTCTTTTGTTGAATGGGAGTGACTCTGTTATCCAGTACTATGTTCCTTACTTGTCCGCTATTCAGCTCTATGTAGACCCATCAAAGTCCTCAACGAGAATAAGGCCTGGTGATGAGAGTGATGCAGAGTCATCGAGGGAGACAAGTAGTGATGGCAGCAGTGATTATGGAACAGAAAGAGGATTCAACAATGTTCCTTATGGTACTTTAGGTTGGCAGAATGCTACAGATGTAAATGGCCATGGTTGGAATAAAACCTTACCGAGAACTAAACCCTTAAATGGTTCCTCAAGTGATGAAAGTGGTGAGGCTTGTAACCCTCCTGGTCAACCTATCTTTCAATATATGGAGCATGATCAACCATTTGGTCGTGAACCTTTGGCTGATAAGATTTCATTTCTTGCATCTCAATTTCCAGAGCTGAGGACTTACAGGAGCTGTGATTTATCACCTTCTAGTTGGATTTCTGTAGCATGGTATCCGATATATAGGATACCTACAGGTCCAACTTTGCAGAGCCTAGATGCCTGCTTCTTGACCTTTCATTCCGTATCGACTCCCACAAAGGGTGCAAGCACTGATAGGCTTCAGTTTGGTGGTGCTAGAGACAATCAAAATGCCAATTTCAAACTATCATTGCCAATCTTTGGGCTTGCTTCGTACAAGTTCAAAGTTCCCTTTTGGAATTCTAATGGAGTTTATGAATGTCAAAGGGCTGATTATCTATTGCGAGAAGCTGACAACTGGCTCAGGCAATTGCAAGTTAATCATCCGGATTTCAATTTCTTTGTGTCGCACAGCATTCCAAAGAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF789

Protein Analysis

390

Amino Acids

43.88

Weight (kDa)

6.09

Isoelectric Point (pI)

40.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009360)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16100
fragaria_vesca	FvH4_4g19180 FvH4_4g19180
malus_domestica	MD13G1160300.v1.1 MD13G1160400.v1.1 MD16G1159600.v1.1
prunus_persica	Prupe.1G126800_v2.0.a1
pyrus_communis	pycom13g13640 pycom16g13450
rosa_chinensis	RchiOBHm_Chr4g0424141
rosa_laevigata	RLG00000007501
rosa_multiflora	Rmu_sc0002260.1_g000045 Rmu_sc0014711.1_g000001 Rmu_sc0019763.1_g000001 Rmu_sc0019764.1_g000001
rosa_roxburghii	Rroxscaffold_5G00366130
rosa_rugosa	Rorug04G0193400
rosa_samantha	Rh4AG251300 Rh4BG256400 Rh4CG267300 Rh4DG251000
rosa_wichuraiana	Rw4G021670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	338
Acc36I	ACCTGC	1 cut(s)	338
AccB7I	CCANNNNNTGG	1 cut(s)	1001
AccI	GTMKAC	1 cut(s)	429
AccII	CGCG	2 cut(s)	273, 338
AccIII	TCCGGA	1 cut(s)	1126
AciI	CCGC	3 cut(s)	53, 227, 411
AclWI	GGATC	1 cut(s)	201
AcoI	YGGCCR	1 cut(s)	592
AcsI	RAATTY	2 cut(s)	187, 1039
AcuI	CTGAAG	1 cut(s)	926
AfaI	GTAC	5 cut(s)	209, 341, 392, 559, 1016
AfiI	CCNNNNNNNGG	3 cut(s)	635, 920, 1001
AgsI	TTSAA	7 cut(s)	325, 367, 541, 695, 982, 1024, 1135
AjnI	CCWGG	2 cut(s)	460, 676
AleI	CACNNNNGTG	1 cut(s)	218
AluBI	AGCT	6 cut(s)	59, 88, 421, 775, 792, 1091
AluI	AGCT	6 cut(s)	59, 88, 421, 775, 792, 1091
Alw26I	GTCTC	2 cut(s)	488, 954
AlwI	GGATC	1 cut(s)	201
AlwNI	CAGNNNCTG	1 cut(s)	792
Aor13HI	TCCGGA	1 cut(s)	1126
AoxI	GGCC	2 cut(s)	458, 592
ApeKI	GCWGC	4 cut(s)	67, 70, 73, 510
ApoI	RAATTY	2 cut(s)	187, 1039
Asp700I	GAANNNNTTC	1 cut(s)	41
AspLEI	GCGC	1 cut(s)	338
AspS9I	GGNCC	1 cut(s)	857
AsuHPI	GGTGA	3 cut(s)	476, 671, 795
AsuII	TTCGAA	1 cut(s)	242
AvaII	GGWCC	1 cut(s)	857
BalI	TGGCCA	1 cut(s)	594
BbsI	GAAGAC	1 cut(s)	251
BbvCI	CCTCAGC	1 cut(s)	776
BbvI	GCAGC	4 cut(s)	79, 82, 85, 522
BccI	CCATC	3 cut(s)	255, 442, 500
BceAI	ACGGC	1 cut(s)	80
BcgI	CGANNNNNNTGC	2 cut(s)	468, 502
BciT130I	CCWGG	2 cut(s)	462, 678
BciVI	GTATCC	3 cut(s)	18, 840, 843
BclI	TGATCA	1 cut(s)	709
BcoDI	GTCTC	2 cut(s)	488, 954
BfaI	CTAG	4 cut(s)	89, 810, 875, 957
BfmI	CTRYAG	3 cut(s)	579, 822, 852
BfuAI	ACCTGC	1 cut(s)	338
BfuI	GTATCC	3 cut(s)	18, 840, 843
BisI	GCNGC	5 cut(s)	68, 71, 74, 228, 511
BlsI	GCNGC	5 cut(s)	69, 72, 75, 229, 512
BmcAI	AGTACT	1 cut(s)	392
Bme1390I	CCNGG	2 cut(s)	462, 678
Bme18I	GGWCC	1 cut(s)	857
BmgT120I	GGNCC	1 cut(s)	857
BmiI	GGNNCC	1 cut(s)	640
BmrFI	CCNGG	2 cut(s)	462, 678
BmsI	GCATC	4 cut(s)	112, 466, 767, 868
BpiI	GAAGAC	1 cut(s)	251
Bpu10I	CCTNAGC	2 cut(s)	776, 1103
Bpu14I	TTCGAA	1 cut(s)	242
BpuEI	CTTGAG	1 cut(s)	628
BsaJI	CCNNGG	1 cut(s)	595
BsaWI	WCCGGW	2 cut(s)	152, 1126
Bsc4I	CCNNNNNNNGG	3 cut(s)	635, 920, 1001
Bse1I	ACTGG	2 cut(s)	388, 1103
Bse3DI	GCAATG	1 cut(s)	989
BseAI	TCCGGA	1 cut(s)	1126
BseBI	CCWGG	2 cut(s)	462, 678
BseDI	CCNNGG	1 cut(s)	595
BseGI	GGATG	3 cut(s)	266, 286, 1123
BseLI	CCNNNNNNNGG	3 cut(s)	635, 920, 1001
BseMI	GCAATG	1 cut(s)	989
BseMII	CTCAG	2 cut(s)	767, 1117
BseNI	ACTGG	2 cut(s)	388, 1103
BseRI	GAGGAG	1 cut(s)	280
BseXI	GCAGC	4 cut(s)	79, 82, 85, 522
BsgI	GTGCAG	1 cut(s)	366
Bsh1236I	CGCG	2 cut(s)	273, 338
BshFI	GGCC	2 cut(s)	460, 594
BsiSI	CCGG	2 cut(s)	153, 1127
BsiWI	CGTACG	1 cut(s)	339
BslFI	GGGAC	1 cut(s)	338
BslI	CCNNNNNNNGG	3 cut(s)	635, 920, 1001
BsmAI	GTCTC	2 cut(s)	488, 954
BsmFI	GGGAC	1 cut(s)	338
BsmI	GAATGC	2 cut(s)	580, 1155
BsnI	GGCC	2 cut(s)	460, 594
Bsp119I	TTCGAA	1 cut(s)	242
Bsp13I	TCCGGA	1 cut(s)	1126
Bsp143I	GATC	2 cut(s)	193, 709
Bsp19I	CCATGG	1 cut(s)	595
Bsp68I	TCGCGA	1 cut(s)	273
BspACI	CCGC	3 cut(s)	53, 227, 411
BspANI	GGCC	2 cut(s)	460, 594
BspCNI	CTCAG	2 cut(s)	768, 1116
BspEI	TCCGGA	1 cut(s)	1126
BspFNI	CGCG	2 cut(s)	273, 338
BspLI	GGNNCC	1 cut(s)	640
BspMI	ACCTGC	1 cut(s)	338
BspPI	GGATC	1 cut(s)	201
BspT104I	TTCGAA	1 cut(s)	242
BsrDI	GCAATG	1 cut(s)	989
BsrI	ACTGG	2 cut(s)	388, 1103
BssECI	CCNNGG	1 cut(s)	595
BssMI	GATC	2 cut(s)	193, 709
BssT1I	CCWWGG	1 cut(s)	595
Bst2UI	CCWGG	2 cut(s)	462, 678
Bst4CI	ACNGT	3 cut(s)	134, 149, 344
BstBI	TTCGAA	1 cut(s)	242
BstC8I	GCNNGC	4 cut(s)	57, 883, 928, 1008
BstDEI	CTNAG	2 cut(s)	776, 1103
BstDSI	CCRYGG	1 cut(s)	595
BstF5I	GGATG	3 cut(s)	266, 286, 1123
BstFNI	CGCG	2 cut(s)	273, 338
BstHHI	GCGC	1 cut(s)	338
BstKTI	GATC	2 cut(s)	196, 712
BstMAI	GTCTC	2 cut(s)	488, 954
BstMBI	GATC	2 cut(s)	193, 709
BstMWI	GCNNNNNNNGC	3 cut(s)	73, 109, 344
BstNI	CCWGG	2 cut(s)	462, 678
BstSCI	CCNGG	2 cut(s)	460, 676
BstSFI	CTRYAG	3 cut(s)	579, 822, 852
BstUI	CGCG	2 cut(s)	273, 338
BstV1I	GCAGC	4 cut(s)	79, 82, 85, 522
BstV2I	GAAGAC	1 cut(s)	251
BstXI	CCANNNNNNTGG	1 cut(s)	220
BsuI	GTATCC	3 cut(s)	18, 840, 843
BsuRI	GGCC	2 cut(s)	460, 594
BtgI	CCRYGG	1 cut(s)	595
BtgZI	GCGATG	1 cut(s)	192
BtsCI	GGATG	3 cut(s)	266, 286, 1123
BtsI	GCAGTG	1 cut(s)	520
BtsIMutI	CAGTG	2 cut(s)	520, 930
BtuMI	TCGCGA	1 cut(s)	273
BveI	ACCTGC	1 cut(s)	338
Cac8I	GCNNGC	4 cut(s)	57, 883, 928, 1008
CaiI	CAGNNNCTG	1 cut(s)	792
CfoI	GCGC	1 cut(s)	338
Cfr13I	GGNCC	1 cut(s)	857
Csp6I	GTAC	5 cut(s)	208, 340, 391, 558, 1015
CviAII	CATG	3 cut(s)	596, 707, 828
CviQI	GTAC	5 cut(s)	208, 340, 391, 558, 1015
DdeI	CTNAG	2 cut(s)	776, 1103
DpnI	GATC	2 cut(s)	195, 711
DpnII	GATC	2 cut(s)	193, 709
EaeI	YGGCCR	1 cut(s)	592
Eco130I	CCWWGG	1 cut(s)	595
Eco147I	AGGCCT	1 cut(s)	460
Eco47I	GGWCC	1 cut(s)	857
Eco57I	CTGAAG	1 cut(s)	926
EcoRI	GAATTC	1 cut(s)	1039
EcoRII	CCWGG	2 cut(s)	460, 676
EcoT14I	CCWWGG	1 cut(s)	595
ErhI	CCWWGG	1 cut(s)	595
FaeI	CATG	3 cut(s)	599, 710, 831
FaqI	GGGAC	1 cut(s)	338
FatI	CATG	3 cut(s)	595, 706, 827
FauI	CCCGC	1 cut(s)	60
FbaI	TGATCA	1 cut(s)	709
FblI	GTMKAC	1 cut(s)	429
Fnu4HI	GCNGC	5 cut(s)	68, 71, 74, 228, 511
FokI	GGATG	3 cut(s)	273, 273, 1110
Fsp4HI	GCNGC	5 cut(s)	68, 71, 74, 228, 511
FspBI	CTAG	4 cut(s)	89, 810, 875, 957
GlaI	GCGC	1 cut(s)	337
GluI	GCNGC	5 cut(s)	68, 71, 74, 228, 511
HaeIII	GGCC	2 cut(s)	460, 594
HapII	CCGG	2 cut(s)	153, 1127
HhaI	GCGC	1 cut(s)	338
Hin1II	CATG	3 cut(s)	599, 710, 831
Hin6I	GCGC	1 cut(s)	336
HinP1I	GCGC	1 cut(s)	336
HincII	GTYRAC	1 cut(s)	683
HindII	GTYRAC	1 cut(s)	683
HinfI	GANTC	8 cut(s)	37, 122, 268, 317, 377, 482, 537, 910
HpaII	CCGG	2 cut(s)	153, 1127
HphI	GGTGA	3 cut(s)	476, 671, 795
Hpy166II	GTNNAC	4 cut(s)	210, 430, 683, 728
Hpy188I	TCNGA	4 cut(s)	24, 108, 127, 837
Hpy188III	TCNNGA	5 cut(s)	272, 725, 770, 889, 1127
Hpy8I	GTNNAC	4 cut(s)	210, 430, 683, 728
HpyAV	CCTTC	1 cut(s)	816
HpyCH4III	ACNGT	3 cut(s)	134, 149, 344
HpyCH4V	TGCA	6 cut(s)	347, 479, 758, 868, 926, 1114
HpyF10VI	GCNNNNNNNGC	3 cut(s)	73, 109, 344
HpyF3I	CTNAG	2 cut(s)	776, 1103
Hsp92II	CATG	3 cut(s)	599, 710, 831
HspAI	GCGC	1 cut(s)	336
Kpn2I	TCCGGA	1 cut(s)	1126
Ksp22I	TGATCA	1 cut(s)	709
Kzo9I	GATC	2 cut(s)	193, 709
LmnI	GCTCC	3 cut(s)	333, 703, 789
Lsp1109I	GCAGC	4 cut(s)	79, 82, 85, 522
LweI	GCATC	4 cut(s)	112, 466, 767, 868
MaeI	CTAG	4 cut(s)	89, 810, 875, 957
MaeIII	GTNAC	2 cut(s)	374, 668
MalI	GATC	2 cut(s)	195, 711
MboI	GATC	2 cut(s)	193, 709
MboII	GAAGA	1 cut(s)	256
MfeI	CAATTG	1 cut(s)	1109
MlsI	TGGCCA	1 cut(s)	594
MluCI	AATT	7 cut(s)	187, 281, 764, 976, 1039, 1109, 1135
MluNI	TGGCCA	1 cut(s)	594
MlyI	GAGTC	4 cut(s)	277, 371, 491, 904
MmeI	TCCRAC	3 cut(s)	581, 794, 884
Mox20I	TGGCCA	1 cut(s)	594
MroI	TCCGGA	1 cut(s)	1126
MroXI	GAANNNNTTC	1 cut(s)	41
MscI	TGGCCA	1 cut(s)	594
MseI	TTAA	2 cut(s)	632, 1119
MslI	CAYNNNNRTG	1 cut(s)	218
Msp20I	TGGCCA	1 cut(s)	594
MspI	CCGG	2 cut(s)	153, 1127
MspR9I	CCNGG	2 cut(s)	462, 678
MunI	CAATTG	1 cut(s)	1109
Mva1269I	GAATGC	2 cut(s)	580, 1155
MvaI	CCWGG	2 cut(s)	462, 678
MvnI	CGCG	2 cut(s)	273, 338
MwoI	GCNNNNNNNGC	3 cut(s)	73, 109, 344
NcoI	CCATGG	1 cut(s)	595
NdeII	GATC	2 cut(s)	193, 709
NlaIII	CATG	3 cut(s)	599, 710, 831
NlaIV	GGNNCC	1 cut(s)	640
NmuCI	GTSAC	1 cut(s)	374
NruI	TCGCGA	1 cut(s)	273
NspV	TTCGAA	1 cut(s)	242
OliI	CACNNNNGTG	1 cut(s)	218
PaqCI	CACCTGC	1 cut(s)	338
PceI	AGGCCT	1 cut(s)	460
PctI	GAATGC	2 cut(s)	580, 1155
PdmI	GAANNNNTTC	1 cut(s)	41
PfeI	GAWTC	4 cut(s)	37, 122, 317, 537
Pfl23II	CGTACG	1 cut(s)	339
PflMI	CCANNNNNTGG	1 cut(s)	1001
PkrI	GCNGC	5 cut(s)	69, 72, 75, 229, 512
PleI	GAGTC	4 cut(s)	276, 371, 490, 904
PpsI	GAGTC	4 cut(s)	276, 371, 490, 904
Psp6I	CCWGG	2 cut(s)	460, 676
PspGI	CCWGG	2 cut(s)	460, 676
PspLI	CGTACG	1 cut(s)	339
PspN4I	GGNNCC	1 cut(s)	640
PspPI	GGNCC	1 cut(s)	857
PstNI	CAGNNNCTG	1 cut(s)	792
RruI	TCGCGA	1 cut(s)	273
RsaI	GTAC	5 cut(s)	209, 341, 392, 559, 1016
RsaNI	GTAC	5 cut(s)	208, 340, 391, 558, 1015
RseI	CAYNNNNRTG	1 cut(s)	218
SaqAI	TTAA	2 cut(s)	632, 1119
SatI	GCNGC	5 cut(s)	68, 71, 74, 228, 511
Sau3AI	GATC	2 cut(s)	193, 709
Sau96I	GGNCC	1 cut(s)	857
ScaI	AGTACT	1 cut(s)	392
SchI	GAGTC	4 cut(s)	277, 371, 491, 904
ScrFI	CCNGG	2 cut(s)	462, 678
SfaNI	GCATC	4 cut(s)	112, 466, 767, 868
SfcI	CTRYAG	3 cut(s)	579, 822, 852
SfuI	TTCGAA	1 cut(s)	242
SinI	GGWCC	1 cut(s)	857
SmiMI	CAYNNNNRTG	1 cut(s)	218
SmlI	CTYRAG	1 cut(s)	643
SmoI	CTYRAG	1 cut(s)	643
Sse9I	AATT	7 cut(s)	187, 281, 764, 976, 1039, 1109, 1135
SseBI	AGGCCT	1 cut(s)	460
SsiI	CCGC	3 cut(s)	53, 227, 411
SspMI	CTAG	4 cut(s)	89, 810, 875, 957
StuI	AGGCCT	1 cut(s)	460
StyD4I	CCNGG	2 cut(s)	460, 676
StyI	CCWWGG	1 cut(s)	595
TaaI	ACNGT	3 cut(s)	134, 149, 344
TaqI	TCGA	4 cut(s)	14, 242, 488, 908
TasI	AATT	7 cut(s)	187, 281, 764, 976, 1039, 1109, 1135
TatI	WGTACW	2 cut(s)	207, 390
TauI	GCSGC	1 cut(s)	230
TfiI	GAWTC	4 cut(s)	37, 122, 317, 537
Tru1I	TTAA	2 cut(s)	632, 1119
Tru9I	TTAA	2 cut(s)	632, 1119
TscAI	CASTG	2 cut(s)	520, 937
TseFI	GTSAC	1 cut(s)	374
TseI	GCWGC	4 cut(s)	67, 70, 73, 510
Tsp45I	GTSAC	1 cut(s)	374
TspDTI	ATGAA	5 cut(s)	132, 666, 738, 887, 1071
TspGWI	ACGGA	1 cut(s)	892
TspRI	CASTG	2 cut(s)	520, 937
Van91I	CCANNNNNTGG	1 cut(s)	1001
VpaK11BI	GGWCC	1 cut(s)	857
XapI	RAATTY	2 cut(s)	187, 1039
XmiI	GTMKAC	1 cut(s)	429
XmnI	GAANNNNTTC	1 cut(s)	41
XspI	CTAG	4 cut(s)	89, 810, 875, 957
ZrmI	AGTACT	1 cut(s)	392

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.