RLG00000007501

Protein of unknown function (DUF789)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0009360
Physical Location & Seq
Reverse (-)
17604118 .. 17608021
3904 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000007501

Sequence Viewer

Length: 1218 bp
ATGTCTGGTCACGGCGGAGTTTCGCTCGGTCGGACTCGGGGCGAGAACCGGTTCTACAACCCGCCCCCGATTCGAGAGCGACAACACCAGCAACAGCTTCAGCGGCAGAAGCTTGAACAGGAGAAGCAGCATCAGAGGCGGCCGGTGTCGGTGTCGGTGGTGGAGTCCGACGACTGTGCTACGTCGCATAGTTCCGGGTCGGGTCGGGAAGCGCTCAGCGAGGCCGCGAATTTAGATCGGTTCCTCGAGTTCACAACGCCCCTGGCTCGAGCTCATTTTTTGCCCAAGACGAGTAGCAGGGGATGGAGGACTCATGAGCCAGAGTTACATCCCTACTTTGTGCTTGGAGATTTGTGGGAATCTTTCAAGGAGTGGAGTGCGTACGGCGCGGGTGTCCCTCTTTTGTTAAATGGGAGTGACTCTGTCATACAGTACTATGTACCTTACTTGTCTGCCATTCAGCTCTATGTAGACCCATCAAAGCCTCCCACAAGGATAAGGAAGCCTGGTGATGACAGTGATGTAGAGTCATCGAGGGAGACAAGTAGTGATGGCAGCAGTGATTATGGAGCAGAAAGAGGAATCAATGGTGTTGTTGATGATGCTTGGAGTCGGCAGAATATTGCTGATGTAAATGGCCATGGTTGGAATAGAGTCTCACCAAGAGATAAACCCTTAACTGGTTCCTCAAGTGATGAAAGTGAGATTTGCAATCCTCCAGGTCAGCTTGTATTTCAATATTTGGAGCACGATCAACCGTTTGGCCGTGAACCTTTGGCTGATAAGATTCAAGTTCTTGCATCCCAATTTCCAGAGCTAAGGACTTACAGGAGCTCTGACTTATCACCTTCTAGTTGGATCTCTGTAGCATGGTATCCCATATATCGGATACCTACAGGTCCAACATTACAGAGCCTGGATGCTTGCTTCTTGACCTTTCATTCCCTTTCGACTCCCTTAAAGGGTACAAGCACTGATAGGCTTCGTCCCAGCGGTGCACGACCTAGAGAGGTTCAAAATGCCGACTTCAAACTCTCGTTGCCAACTTTTGGATTGGCTTCCTACAAGTTCAAGGGTTCCTTTTGGAACTCTAATGGAGTTTATGAATCTCAAAAGGCTAATTCTCTATTGCGAGCAGCTGAAAACTGGCTCAGGCTATTGCAAGTTCATCATCCTGATTTCAACTTCTTTGTGTCGCACAATACACCAAGGAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF789

Protein Analysis

406

Amino Acids

45.61

Weight (kDa)

6.91

Isoelectric Point (pI)

40.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF789 PF05623 76 - 397 6.2e-106 Protein of unknown function (DUF789)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 1049
AccI GTMKAC 1 cut(s) 471
AccII CGCG 2 cut(s) 227, 389
AciI CCGC 7 cut(s) 15, 62, 103, 139, 225, 389, 993
AclWI GGATC 1 cut(s) 866
AcoI YGGCCR 3 cut(s) 140, 637, 763
AcsI RAATTY 1 cut(s) 229
AcuI CTGAAG 1 cut(s) 83
AfaI GTAC 4 cut(s) 383, 434, 441, 967
AfeI AGCGCT 1 cut(s) 213
AfiI CCNNNNNNNGG 4 cut(s) 680, 885, 962, 1049
AgeI ACCGGT 1 cut(s) 48
AgsI TTSAA 8 cut(s) 116, 367, 737, 791, 1016, 1030, 1072, 1183
AjnI CCWGG 4 cut(s) 261, 505, 718, 915
AluBI AGCT 8 cut(s) 97, 112, 272, 463, 727, 817, 834, 1139
AluI AGCT 8 cut(s) 97, 112, 272, 463, 727, 817, 834, 1139
Alw21I GWGCWC 4 cut(s) 274, 750, 836, 1000
Alw26I GTCTC 2 cut(s) 533, 661
Alw44I GTGCAC 1 cut(s) 996
AlwI GGATC 1 cut(s) 866
AlwNI CAGNNNCTG 1 cut(s) 916
Ama87I CYCGRG 3 cut(s) 36, 245, 267
Aor51HI AGCGCT 1 cut(s) 213
AoxI GGCC 4 cut(s) 140, 222, 637, 763
ApaLI GTGCAC 1 cut(s) 996
ApeKI GCWGC 3 cut(s) 127, 555, 1136
ApoI RAATTY 1 cut(s) 229
AsiGI ACCGGT 1 cut(s) 48
Asp700I GAANNNNTTC 1 cut(s) 50
AspLEI GCGC 2 cut(s) 214, 389
AspS9I GGNCC 1 cut(s) 899
AsuC2I CCSGG 1 cut(s) 196
AsuHPI GGTGA 3 cut(s) 521, 651, 837
AvaI CYCGRG 3 cut(s) 36, 245, 267
AvaII GGWCC 1 cut(s) 899
BaeGI GKGCMC 1 cut(s) 1000
BalI TGGCCA 1 cut(s) 639
BanII GRGCYC 2 cut(s) 274, 836
Bbv12I GWGCWC 4 cut(s) 274, 750, 836, 1000
BbvI GCAGC 3 cut(s) 139, 567, 1148
BccI CCATC 3 cut(s) 297, 484, 545
BceAI ACGGC 3 cut(s) 28, 400, 750
BcgI CGANNNNNNTGC 2 cut(s) 158, 192
BciT130I CCWGG 4 cut(s) 263, 507, 720, 917
BciVI GTATCC 2 cut(s) 882, 885
BcnI CCSGG 1 cut(s) 196
BcoDI GTCTC 2 cut(s) 533, 661
BfaI CTAG 2 cut(s) 852, 1005
BfmI CTRYAG 2 cut(s) 864, 894
BfoI RGCGCY 1 cut(s) 215
BfuI GTATCC 2 cut(s) 882, 885
BisI GCNGC 6 cut(s) 104, 128, 140, 225, 556, 1137
BlpI GCTNAGC 1 cut(s) 215
BlsI GCNGC 6 cut(s) 105, 129, 141, 226, 557, 1138
BmcAI AGTACT 1 cut(s) 434
Bme1390I CCNGG 5 cut(s) 196, 263, 507, 720, 917
Bme18I GGWCC 1 cut(s) 899
BmeT110I CYCGRG 3 cut(s) 36, 245, 267
BmgT120I GGNCC 1 cut(s) 899
BmiI GGNNCC 3 cut(s) 242, 685, 1078
BmrFI CCNGG 5 cut(s) 196, 263, 507, 720, 917
BmsI GCATC 4 cut(s) 139, 592, 809, 910
BplI GAGNNNNNCTC 2 cut(s) 9, 41
BpmI CTGGAG 1 cut(s) 702
Bpu10I CCTNAGC 2 cut(s) 818, 1151
Bpu1102I GCTNAGC 1 cut(s) 215
BpuEI CTTGAG 1 cut(s) 673
BpuMI CCSGG 1 cut(s) 196
BsaJI CCNNGG 3 cut(s) 261, 640, 1208
BsaWI WCCGGW 1 cut(s) 48
Bsc4I CCNNNNNNNGG 4 cut(s) 680, 885, 962, 1049
Bse118I RCCGGY 2 cut(s) 48, 142
Bse1I ACTGG 2 cut(s) 685, 1151
BseBI CCWGG 4 cut(s) 263, 507, 720, 917
BseDI CCNNGG 3 cut(s) 261, 640, 1208
BseGI GGATG 5 cut(s) 308, 328, 800, 925, 1171
BseLI CCNNNNNNNGG 4 cut(s) 680, 885, 962, 1049
BseMII CTCAG 2 cut(s) 229, 1165
BseNI ACTGG 2 cut(s) 685, 1151
BseSI GKGCMC 1 cut(s) 1000
BseX3I CGGCCG 1 cut(s) 140
BseXI GCAGC 3 cut(s) 139, 567, 1148
BseYI CCCAGC 1 cut(s) 989
Bsh1236I CGCG 2 cut(s) 227, 389
Bsh1285I CGRYCG 2 cut(s) 31, 143
BshFI GGCC 4 cut(s) 142, 224, 639, 765
BshTI ACCGGT 1 cut(s) 48
BsiEI CGRYCG 2 cut(s) 31, 143
BsiHKAI GWGCWC 4 cut(s) 274, 750, 836, 1000
BsiHKCI CYCGRG 3 cut(s) 36, 245, 267
BsiSI CCGG 3 cut(s) 49, 143, 195
BsiWI CGTACG 1 cut(s) 381
BslFI GGGAC 2 cut(s) 380, 972
BslI CCNNNNNNNGG 4 cut(s) 680, 885, 962, 1049
BsmAI GTCTC 2 cut(s) 533, 661
BsmFI GGGAC 2 cut(s) 380, 972
BsnI GGCC 4 cut(s) 142, 224, 639, 765
BsoBI CYCGRG 3 cut(s) 36, 245, 267
Bsp1286I GDGCHC 4 cut(s) 274, 750, 836, 1000
Bsp143I GATC 3 cut(s) 235, 751, 858
Bsp1720I GCTNAGC 1 cut(s) 215
Bsp19I CCATGG 1 cut(s) 640
BspACI CCGC 7 cut(s) 15, 62, 103, 139, 225, 389, 993
BspANI GGCC 4 cut(s) 142, 224, 639, 765
BspCNI CTCAG 2 cut(s) 228, 1164
BspFNI CGCG 2 cut(s) 227, 389
BspHI TCATGA 1 cut(s) 313
BspLI GGNNCC 3 cut(s) 242, 685, 1078
BspPI GGATC 1 cut(s) 866
BsrFI RCCGGY 2 cut(s) 48, 142
BsrI ACTGG 2 cut(s) 685, 1151
BssAI RCCGGY 2 cut(s) 48, 142
BssECI CCNNGG 3 cut(s) 261, 640, 1208
BssMI GATC 3 cut(s) 235, 751, 858
BssT1I CCWWGG 2 cut(s) 640, 1208
Bst2UI CCWGG 4 cut(s) 263, 507, 720, 917
Bst4CI ACNGT 4 cut(s) 176, 432, 518, 759
BstC8I GCNNGC 2 cut(s) 925, 1134
BstDEI CTNAG 3 cut(s) 215, 818, 1151
BstDSI CCRYGG 1 cut(s) 640
BstF5I GGATG 5 cut(s) 308, 328, 800, 925, 1171
BstFNI CGCG 2 cut(s) 227, 389
BstH2I RGCGCY 1 cut(s) 215
BstHHI GCGC 2 cut(s) 214, 389
BstKTI GATC 3 cut(s) 238, 754, 861
BstMAI GTCTC 2 cut(s) 533, 661
BstMBI GATC 3 cut(s) 235, 751, 858
BstMCI CGRYCG 2 cut(s) 31, 143
BstMWI GCNNNNNNNGC 4 cut(s) 103, 109, 136, 386
BstNI CCWGG 4 cut(s) 263, 507, 720, 917
BstSCI CCNGG 5 cut(s) 194, 261, 505, 718, 915
BstSFI CTRYAG 2 cut(s) 864, 894
BstSLI GKGCMC 1 cut(s) 1000
BstUI CGCG 2 cut(s) 227, 389
BstV1I GCAGC 3 cut(s) 139, 567, 1148
BstX2I RGATCY 1 cut(s) 858
BstYI RGATCY 1 cut(s) 858
BstZI CGGCCG 1 cut(s) 140
BsuI GTATCC 2 cut(s) 882, 885
BsuRI GGCC 4 cut(s) 142, 224, 639, 765
BtgI CCRYGG 1 cut(s) 640
BtsCI GGATG 5 cut(s) 308, 328, 800, 925, 1171
BtsI GCAGTG 1 cut(s) 565
BtsIMutI CAGTG 3 cut(s) 523, 565, 972
Cac8I GCNNGC 2 cut(s) 925, 1134
CaiI CAGNNNCTG 1 cut(s) 916
CciI TCATGA 1 cut(s) 313
CfoI GCGC 2 cut(s) 214, 389
Cfr10I RCCGGY 2 cut(s) 48, 142
Cfr13I GGNCC 1 cut(s) 899
Csp6I GTAC 4 cut(s) 382, 433, 440, 966
CspAI ACCGGT 1 cut(s) 48
CviAII CATG 3 cut(s) 314, 641, 870
CviQI GTAC 4 cut(s) 382, 433, 440, 966
DdeI CTNAG 3 cut(s) 215, 818, 1151
DpnI GATC 3 cut(s) 237, 753, 860
DpnII GATC 3 cut(s) 235, 751, 858
EaeI YGGCCR 3 cut(s) 140, 637, 763
EagI CGGCCG 1 cut(s) 140
EciI GGCGGA 1 cut(s) 30
Ecl136II GAGCTC 2 cut(s) 272, 834
EclXI CGGCCG 1 cut(s) 140
Eco130I CCWWGG 2 cut(s) 640, 1208
Eco24I GRGCYC 2 cut(s) 274, 836
Eco47I GGWCC 1 cut(s) 899
Eco47III AGCGCT 1 cut(s) 213
Eco52I CGGCCG 1 cut(s) 140
Eco53kI GAGCTC 2 cut(s) 272, 834
Eco57I CTGAAG 1 cut(s) 83
Eco88I CYCGRG 3 cut(s) 36, 245, 267
EcoICRI GAGCTC 2 cut(s) 272, 834
EcoRII CCWGG 4 cut(s) 261, 505, 718, 915
EcoT14I CCWWGG 2 cut(s) 640, 1208
EcoT38I GRGCYC 2 cut(s) 274, 836
ErhI CCWWGG 2 cut(s) 640, 1208
FaeI CATG 3 cut(s) 317, 644, 873
FalI AAGNNNNNCTT 2 cut(s) 1064, 1096
FaqI GGGAC 2 cut(s) 380, 972
FatI CATG 3 cut(s) 313, 640, 869
FauI CCCGC 2 cut(s) 69, 382
FblI GTMKAC 1 cut(s) 471
Fnu4HI GCNGC 6 cut(s) 104, 128, 140, 225, 556, 1137
FokI GGATG 5 cut(s) 315, 315, 787, 932, 1158
FriOI GRGCYC 2 cut(s) 274, 836
Fsp4HI GCNGC 6 cut(s) 104, 128, 140, 225, 556, 1137
FspBI CTAG 2 cut(s) 852, 1005
GlaI GCGC 2 cut(s) 213, 388
GluI GCNGC 6 cut(s) 104, 128, 140, 225, 556, 1137
GsaI CCCAGC 1 cut(s) 993
GsuI CTGGAG 1 cut(s) 702
HaeII RGCGCY 1 cut(s) 215
HaeIII GGCC 4 cut(s) 142, 224, 639, 765
HapII CCGG 3 cut(s) 49, 143, 195
HhaI GCGC 2 cut(s) 214, 389
Hin1II CATG 3 cut(s) 317, 644, 873
Hin6I GCGC 2 cut(s) 212, 387
HinP1I GCGC 2 cut(s) 212, 387
HindIII AAGCTT 1 cut(s) 110
HpaII CCGG 3 cut(s) 49, 143, 195
HphI GGTGA 3 cut(s) 521, 651, 837
Hpy166II GTNNAC 4 cut(s) 252, 472, 770, 998
Hpy188I TCNGA 5 cut(s) 33, 135, 169, 838, 888
Hpy188III TCNNGA 6 cut(s) 74, 206, 314, 812, 931, 1175
Hpy8I GTNNAC 4 cut(s) 252, 472, 770, 998
Hpy99I CGWCG 2 cut(s) 173, 187
HpyAV CCTTC 1 cut(s) 858
HpyCH4III ACNGT 4 cut(s) 176, 432, 518, 759
HpyCH4IV ACGT 1 cut(s) 182
HpyCH4V TGCA 4 cut(s) 711, 800, 998, 1162
HpyF10VI GCNNNNNNNGC 4 cut(s) 103, 109, 136, 386
HpyF3I CTNAG 3 cut(s) 215, 818, 1151
HpySE526I ACGT 1 cut(s) 182
Hsp92II CATG 3 cut(s) 317, 644, 873
HspAI GCGC 2 cut(s) 212, 387
Kzo9I GATC 3 cut(s) 235, 751, 858
LmnI GCTCC 3 cut(s) 569, 745, 831
Lsp1109I GCAGC 3 cut(s) 139, 567, 1148
LweI GCATC 4 cut(s) 139, 592, 809, 910
MaeI CTAG 2 cut(s) 852, 1005
MaeII ACGT 1 cut(s) 182
MaeIII GTNAC 3 cut(s) 8, 324, 416
MalI GATC 3 cut(s) 237, 753, 860
MboI GATC 3 cut(s) 235, 751, 858
MflI RGATCY 1 cut(s) 858
MhlI GDGCHC 4 cut(s) 274, 750, 836, 1000
MlsI TGGCCA 1 cut(s) 639
MluCI AATT 3 cut(s) 229, 806, 1120
MluNI TGGCCA 1 cut(s) 639
MlyI GAGTC 8 cut(s) 28, 173, 304, 413, 536, 619, 663, 946
MmeI TCCRAC 5 cut(s) 11, 192, 626, 836, 926
Mox20I TGGCCA 1 cut(s) 639
MroXI GAANNNNTTC 1 cut(s) 50
MscI TGGCCA 1 cut(s) 639
MseI TTAA 3 cut(s) 407, 677, 959
Msp20I TGGCCA 1 cut(s) 639
MspA1I CMGCKG 3 cut(s) 103, 993, 1139
MspI CCGG 3 cut(s) 49, 143, 195
MspR9I CCNGG 5 cut(s) 196, 263, 507, 720, 917
MvaI CCWGG 4 cut(s) 263, 507, 720, 917
MvnI CGCG 2 cut(s) 227, 389
MwoI GCNNNNNNNGC 4 cut(s) 103, 109, 136, 386
NciI CCSGG 1 cut(s) 196
NcoI CCATGG 1 cut(s) 640
NdeII GATC 3 cut(s) 235, 751, 858
NlaIII CATG 3 cut(s) 317, 644, 873
NlaIV GGNNCC 3 cut(s) 242, 685, 1078
NmuCI GTSAC 2 cut(s) 8, 416
PaeR7I CTCGAG 2 cut(s) 245, 267
PagI TCATGA 1 cut(s) 313
PdmI GAANNNNTTC 1 cut(s) 50
PfeI GAWTC 5 cut(s) 70, 359, 582, 787, 1106
Pfl23II CGTACG 1 cut(s) 381
PflFI GACNNNGTC 1 cut(s) 422
PflMI CCANNNNNTGG 1 cut(s) 1049
PinAI ACCGGT 1 cut(s) 48
PkrI GCNGC 6 cut(s) 105, 129, 141, 226, 557, 1138
PleI GAGTC 8 cut(s) 28, 172, 304, 413, 535, 618, 662, 946
PpsI GAGTC 8 cut(s) 28, 172, 304, 413, 535, 618, 662, 946
Psp124BI GAGCTC 2 cut(s) 274, 836
Psp6I CCWGG 4 cut(s) 261, 505, 718, 915
PspFI CCCAGC 1 cut(s) 989
PspGI CCWGG 4 cut(s) 261, 505, 718, 915
PspLI CGTACG 1 cut(s) 381
PspN4I GGNNCC 3 cut(s) 242, 685, 1078
PspPI GGNCC 1 cut(s) 899
PspXI VCTCGAGB 2 cut(s) 245, 267
PsrI GAACNNNNNNTAC 2 cut(s) 38, 70
PstNI CAGNNNCTG 1 cut(s) 916
PsuI RGATCY 1 cut(s) 858
PsyI GACNNNGTC 1 cut(s) 422
PvuII CAGCTG 1 cut(s) 1139
RsaI GTAC 4 cut(s) 383, 434, 441, 967
RsaNI GTAC 4 cut(s) 382, 433, 440, 966
SacI GAGCTC 2 cut(s) 274, 836
SaqAI TTAA 3 cut(s) 407, 677, 959
SatI GCNGC 6 cut(s) 104, 128, 140, 225, 556, 1137
Sau3AI GATC 3 cut(s) 235, 751, 858
Sau96I GGNCC 1 cut(s) 899
ScaI AGTACT 1 cut(s) 434
SchI GAGTC 8 cut(s) 28, 173, 304, 413, 536, 619, 663, 946
ScrFI CCNGG 5 cut(s) 196, 263, 507, 720, 917
SduI GDGCHC 4 cut(s) 274, 750, 836, 1000
SfaNI GCATC 4 cut(s) 139, 592, 809, 910
SfcI CTRYAG 2 cut(s) 864, 894
Sfr274I CTCGAG 2 cut(s) 245, 267
SinI GGWCC 1 cut(s) 899
SlaI CTCGAG 2 cut(s) 245, 267
SmlI CTYRAG 3 cut(s) 245, 267, 688
SmoI CTYRAG 3 cut(s) 245, 267, 688
Sse9I AATT 3 cut(s) 229, 806, 1120
SsiI CCGC 7 cut(s) 15, 62, 103, 139, 225, 389, 993
SspI AATATT 2 cut(s) 622, 740
SspMI CTAG 2 cut(s) 852, 1005
SstI GAGCTC 2 cut(s) 274, 836
StyD4I CCNGG 5 cut(s) 194, 261, 505, 718, 915
StyI CCWWGG 2 cut(s) 640, 1208
TaaI ACNGT 4 cut(s) 176, 432, 518, 759
TaiI ACGT 1 cut(s) 185
TaqI TCGA 5 cut(s) 73, 246, 268, 533, 950
TaqII GACCGA 1 cut(s) 17
TasI AATT 3 cut(s) 229, 806, 1120
TatI WGTACW 1 cut(s) 432
TauI GCSGC 3 cut(s) 106, 142, 227
TfiI GAWTC 5 cut(s) 70, 359, 582, 787, 1106
Tru1I TTAA 3 cut(s) 407, 677, 959
Tru9I TTAA 3 cut(s) 407, 677, 959
TscAI CASTG 3 cut(s) 523, 565, 979
TseFI GTSAC 2 cut(s) 8, 416
TseI GCWGC 3 cut(s) 127, 555, 1136
Tsp45I GTSAC 2 cut(s) 8, 416
TspDTI ATGAA 4 cut(s) 711, 929, 1119, 1157
TspRI CASTG 3 cut(s) 523, 565, 979
Tth111I GACNNNGTC 1 cut(s) 422
Van91I CCANNNNNTGG 1 cut(s) 1049
VneI GTGCAC 1 cut(s) 996
VpaK11BI GGWCC 1 cut(s) 899
XapI RAATTY 1 cut(s) 229
XhoI CTCGAG 2 cut(s) 245, 267
XmiI GTMKAC 1 cut(s) 471
XmnI GAANNNNTTC 1 cut(s) 50
XspI CTAG 2 cut(s) 852, 1005
ZrmI AGTACT 1 cut(s) 434
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.