Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0009360

Physical Location & Seq

Genomic Coordinates Reverse (-)

9643864 .. 9646480

Gene Structure 2617 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g13450.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1182 bp

ATGTCCGGCGTTTCGATTGCTCGGATTCGGGGAGAGAATCGGTTCTACAACCCGCCAGCCGTACGACAACGGCAGCAGCAGCAGCAACAAAAGCTACAGGCAGTGAAGCATCAGAGGCAGTCGGTGGACTCAGACGACTGTGCGACTTCATACAGTTCTGGTTCAGGTCGGGAAGTGGTGAGCGATGCTACGAATTTGGATCGGTTTTTGGAGTACACCACACCTGTGGTTGTGGCCCAGTATTTTCCGAAGACAAGTGTGAAGGGATGGAGGACTCGTGAGTCAGAATTACATCCGTACTTTGTGCTTGGAGATTTATGGGAATCTTTCAAGGAGTGGAGCGCTTACGGTGCGGGTGTTCCTCTTGTGTTGAATGGGAGTGACTCTGTTATCCAGTACTATGTTCCTTACTTGTCCGCTATTCAGCTCTATGTTGACCCATCAAAGCCCTCAACGAGAATAAGGAGGCCTGGTGATGAGAGTGATGCAGAGTCATCGAGGGAGACAAGTAGCAACGGCAGCAGTGATTATGGAACAGAAAGAGGATTTAACAATGTTCCTTATAGTGCTTTAAGTTGGCAGAATGCTGCAGATGTAAATGGCCATGGTTGGAATAAAACCTTCCTGAGAAATAAACCCTTAAATGGTTCCTCAAGTGATGAAAGTGGTGAGGCTTGCAACCCTGGTCAGCTTATATTTCAATATATGGAGCATGATCAACCATTTGGTCGTGAACCTTTGGCTGATAAGATTTCAGTTCTTGCATCTCAATTTCCAGAGCTGAGGACATACAGGAGCTGTGATTTATCACCTTCTAGTTGGCTTTCTGTAGCCTGGTATCCGATATATAGGATACCTACAGGTCCAACATTGCAGAGCCTAGATGCATGCTTCTTGACCTTTCATTCCCTATCGACTCCCACAAGGGGTGCAAGCGCTGATAGACTTCAGTGTGGTGGTGCACGATCTAGAGACAATCAAAATGCCGATTTCAAACTATCATTGCAAATCTTTGGGCTTGCTTCGTACAAGTTCAAGGTTTCCTTTTGGAATCCTAATGGAGTTTACGAATGCCAGAAGGCTGATTCTCTATTGCAAGCGGCTGACAATTGGCTCAGGCGATTGCAAGTTAATCATCCTGATTTCAATTTCTTTGTGTCGCACAGCATTCCAAAGAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF789

Protein Analysis

394

Amino Acids

44.23

Weight (kDa)

7.62

Isoelectric Point (pI)

44.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009360)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16100
fragaria_vesca	FvH4_4g19180 FvH4_4g19180
malus_domestica	MD13G1160300.v1.1 MD13G1160400.v1.1 MD16G1159600.v1.1
prunus_persica	Prupe.1G126800_v2.0.a1
pyrus_communis	pycom13g13640 pycom16g13450
rosa_chinensis	RchiOBHm_Chr4g0424141
rosa_laevigata	RLG00000007501
rosa_multiflora	Rmu_sc0002260.1_g000045 Rmu_sc0014711.1_g000001 Rmu_sc0019763.1_g000001 Rmu_sc0019764.1_g000001
rosa_roxburghii	Rroxscaffold_5G00366130
rosa_rugosa	Rorug04G0193400
rosa_samantha	Rh4AG251300 Rh4BG256400 Rh4CG267300 Rh4DG251000
rosa_wichuraiana	Rw4G021670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	280
AciI	CCGC	4 cut(s)	53, 353, 417, 1100
AclWI	GGATC	1 cut(s)	207
AcoI	YGGCCR	1 cut(s)	601
AcsI	RAATTY	1 cut(s)	193
AcuI	CTGAAG	1 cut(s)	932
AfaI	GTAC	5 cut(s)	63, 215, 299, 398, 1028
AfeI	AGCGCT	2 cut(s)	343, 937
AfiI	CCNNNNNNNGG	2 cut(s)	644, 926
AgsI	TTSAA	6 cut(s)	331, 373, 701, 994, 1036, 1147
AjnI	CCWGG	3 cut(s)	469, 682, 833
AleI	CACNNNNGTG	1 cut(s)	224
AluBI	AGCT	5 cut(s)	94, 427, 691, 781, 798
AluI	AGCT	5 cut(s)	94, 427, 691, 781, 798
Alw21I	GWGCWC	1 cut(s)	964
Alw26I	GTCTC	2 cut(s)	497, 966
Alw44I	GTGCAC	1 cut(s)	960
AlwI	GGATC	1 cut(s)	207
AlwNI	CAGNNNCTG	1 cut(s)	798
Aor51HI	AGCGCT	2 cut(s)	343, 937
AoxI	GGCC	3 cut(s)	234, 467, 601
ApaLI	GTGCAC	1 cut(s)	960
ApeKI	GCWGC	6 cut(s)	73, 76, 79, 82, 519, 587
ApoI	RAATTY	1 cut(s)	193
Asp700I	GAANNNNTTC	1 cut(s)	41
AspLEI	GCGC	2 cut(s)	344, 938
AspS9I	GGNCC	2 cut(s)	235, 863
AsuHPI	GGTGA	4 cut(s)	190, 485, 680, 801
AvaII	GGWCC	1 cut(s)	863
BaeGI	GKGCMC	1 cut(s)	964
BalI	TGGCCA	1 cut(s)	603
BauI	CACGAG	1 cut(s)	276
BbsI	GAAGAC	1 cut(s)	257
Bbv12I	GWGCWC	1 cut(s)	964
BbvCI	CCTCAGC	1 cut(s)	782
BbvI	GCAGC	6 cut(s)	85, 88, 91, 94, 531, 574
BccI	CCATC	2 cut(s)	261, 448
BceAI	ACGGC	3 cut(s)	44, 86, 532
BcgI	CGANNNNNNTGC	2 cut(s)	477, 511
BciT130I	CCWGG	3 cut(s)	471, 684, 835
BciVI	GTATCC	2 cut(s)	846, 849
BclI	TGATCA	1 cut(s)	715
BcoDI	GTCTC	2 cut(s)	497, 966
BfaI	CTAG	3 cut(s)	816, 881, 969
BfmI	CTRYAG	4 cut(s)	95, 588, 828, 858
BfoI	RGCGCY	2 cut(s)	345, 939
BfuI	GTATCC	2 cut(s)	846, 849
BisI	GCNGC	7 cut(s)	74, 77, 80, 83, 520, 588, 1101
BlsI	GCNGC	7 cut(s)	75, 78, 81, 84, 521, 589, 1102
BmcAI	AGTACT	1 cut(s)	398
Bme1390I	CCNGG	3 cut(s)	471, 684, 835
Bme18I	GGWCC	1 cut(s)	863
BmgT120I	GGNCC	2 cut(s)	235, 863
BmiI	GGNNCC	1 cut(s)	649
BmrFI	CCNGG	3 cut(s)	471, 684, 835
BmrI	ACTGGG	1 cut(s)	232
BmsI	GCATC	5 cut(s)	118, 175, 475, 773, 874
BmuI	ACTGGG	1 cut(s)	232
BpiI	GAAGAC	1 cut(s)	257
Bpu10I	CCTNAGC	2 cut(s)	782, 1115
BpuEI	CTTGAG	1 cut(s)	637
BsaJI	CCNNGG	2 cut(s)	604, 682
BsaXI	ACNNNNNCTCC	4 cut(s)	262, 292, 457, 487
Bsc4I	CCNNNNNNNGG	2 cut(s)	644, 926
Bse1I	ACTGG	2 cut(s)	238, 394
Bse3DI	GCAATG	2 cut(s)	869, 1001
BseBI	CCWGG	3 cut(s)	471, 684, 835
BseDI	CCNNGG	2 cut(s)	604, 682
BseGI	GGATG	3 cut(s)	272, 292, 1135
BseLI	CCNNNNNNNGG	2 cut(s)	644, 926
BseMI	GCAATG	2 cut(s)	869, 1001
BseMII	CTCAG	4 cut(s)	144, 617, 773, 1129
BseNI	ACTGG	2 cut(s)	238, 394
BseSI	GKGCMC	1 cut(s)	964
BseXI	GCAGC	6 cut(s)	85, 88, 91, 94, 531, 574
BshFI	GGCC	3 cut(s)	236, 469, 603
BsiHKAI	GWGCWC	1 cut(s)	964
BsiSI	CCGG	1 cut(s)	6
BsiWI	CGTACG	1 cut(s)	61
BslI	CCNNNNNNNGG	2 cut(s)	644, 926
BsmAI	GTCTC	2 cut(s)	497, 966
BsmI	GAATGC	3 cut(s)	589, 1076, 1167
BsnI	GGCC	3 cut(s)	236, 469, 603
Bsp1286I	GDGCHC	1 cut(s)	964
Bsp143I	GATC	3 cut(s)	199, 715, 965
Bsp19I	CCATGG	1 cut(s)	604
BspACI	CCGC	4 cut(s)	53, 353, 417, 1100
BspANI	GGCC	3 cut(s)	236, 469, 603
BspCNI	CTCAG	4 cut(s)	143, 618, 774, 1128
BspLI	GGNNCC	1 cut(s)	649
BspMAI	CTGCAG	1 cut(s)	592
BspPI	GGATC	1 cut(s)	207
BsrDI	GCAATG	2 cut(s)	869, 1001
BsrI	ACTGG	2 cut(s)	238, 394
BssECI	CCNNGG	2 cut(s)	604, 682
BssMI	GATC	3 cut(s)	199, 715, 965
BssSI	CACGAG	1 cut(s)	276
BssT1I	CCWWGG	1 cut(s)	604
Bst2BI	CACGAG	1 cut(s)	276
Bst2UI	CCWGG	3 cut(s)	471, 684, 835
Bst4CI	ACNGT	3 cut(s)	140, 155, 350
BstC8I	GCNNGC	6 cut(s)	57, 676, 889, 934, 1020, 1098
BstDEI	CTNAG	4 cut(s)	130, 626, 782, 1115
BstDSI	CCRYGG	1 cut(s)	604
BstF5I	GGATG	3 cut(s)	272, 292, 1135
BstH2I	RGCGCY	2 cut(s)	345, 939
BstHHI	GCGC	2 cut(s)	344, 938
BstKTI	GATC	3 cut(s)	202, 718, 968
BstMAI	GTCTC	2 cut(s)	497, 966
BstMBI	GATC	3 cut(s)	199, 715, 965
BstMWI	GCNNNNNNNGC	6 cut(s)	79, 82, 91, 115, 350, 519
BstNI	CCWGG	3 cut(s)	471, 684, 835
BstNSI	RCATGY	1 cut(s)	891
BstSCI	CCNGG	3 cut(s)	469, 682, 833
BstSFI	CTRYAG	4 cut(s)	95, 588, 828, 858
BstSLI	GKGCMC	1 cut(s)	964
BstV1I	GCAGC	6 cut(s)	85, 88, 91, 94, 531, 574
BstV2I	GAAGAC	1 cut(s)	257
BstXI	CCANNNNNNTGG	1 cut(s)	226
BsuI	GTATCC	2 cut(s)	846, 849
BsuRI	GGCC	3 cut(s)	236, 469, 603
BtgI	CCRYGG	1 cut(s)	604
BtgZI	GCGATG	1 cut(s)	198
BtsCI	GGATG	3 cut(s)	272, 292, 1135
BtsI	GCAGTG	2 cut(s)	108, 529
BtsIMutI	CAGTG	3 cut(s)	108, 529, 956
Cac8I	GCNNGC	6 cut(s)	57, 676, 889, 934, 1020, 1098
CaiI	CAGNNNCTG	1 cut(s)	798
CfoI	GCGC	2 cut(s)	344, 938
Cfr13I	GGNCC	2 cut(s)	235, 863
Csp6I	GTAC	5 cut(s)	62, 214, 298, 397, 1027
CviAII	CATG	3 cut(s)	605, 713, 888
CviQI	GTAC	5 cut(s)	62, 214, 298, 397, 1027
DdeI	CTNAG	4 cut(s)	130, 626, 782, 1115
DpnI	GATC	3 cut(s)	201, 717, 967
DpnII	GATC	3 cut(s)	199, 715, 965
DrdI	GACNNNNNNGTC	1 cut(s)	280
DseDI	GACNNNNNNGTC	1 cut(s)	280
EaeI	YGGCCR	1 cut(s)	601
Eco130I	CCWWGG	1 cut(s)	604
Eco147I	AGGCCT	1 cut(s)	469
Eco47I	GGWCC	1 cut(s)	863
Eco47III	AGCGCT	2 cut(s)	343, 937
Eco57I	CTGAAG	1 cut(s)	932
EcoRII	CCWGG	3 cut(s)	469, 682, 833
EcoT14I	CCWWGG	1 cut(s)	604
EcoT22I	ATGCAT	1 cut(s)	889
ErhI	CCWWGG	1 cut(s)	604
FaeI	CATG	3 cut(s)	608, 716, 891
FalI	AAGNNNNNCTT	2 cut(s)	1028, 1060
FatI	CATG	3 cut(s)	604, 712, 887
FauI	CCCGC	2 cut(s)	60, 346
FbaI	TGATCA	1 cut(s)	715
Fnu4HI	GCNGC	7 cut(s)	74, 77, 80, 83, 520, 588, 1101
FokI	GGATG	3 cut(s)	279, 279, 1122
Fsp4HI	GCNGC	7 cut(s)	74, 77, 80, 83, 520, 588, 1101
FspBI	CTAG	3 cut(s)	816, 881, 969
GlaI	GCGC	2 cut(s)	343, 937
GluI	GCNGC	7 cut(s)	74, 77, 80, 83, 520, 588, 1101
HaeII	RGCGCY	2 cut(s)	345, 939
HaeIII	GGCC	3 cut(s)	236, 469, 603
HapII	CCGG	1 cut(s)	6
HhaI	GCGC	2 cut(s)	344, 938
Hin1II	CATG	3 cut(s)	608, 716, 891
Hin6I	GCGC	2 cut(s)	342, 936
HinP1I	GCGC	2 cut(s)	342, 936
HincII	GTYRAC	1 cut(s)	436
HindII	GTYRAC	1 cut(s)	436
HpaII	CCGG	1 cut(s)	6
HphI	GGTGA	4 cut(s)	190, 485, 680, 801
Hpy166II	GTNNAC	6 cut(s)	127, 216, 436, 734, 962, 1066
Hpy188I	TCNGA	6 cut(s)	24, 114, 133, 249, 286, 843
Hpy188III	TCNNGA	8 cut(s)	170, 278, 625, 731, 776, 895, 969, 1139
Hpy8I	GTNNAC	6 cut(s)	127, 216, 436, 734, 962, 1066
HpyAV	CCTTC	4 cut(s)	256, 631, 822, 1072
HpyCH4III	ACNGT	3 cut(s)	140, 155, 350
HpyF10VI	GCNNNNNNNGC	6 cut(s)	79, 82, 91, 115, 350, 519
HpyF3I	CTNAG	4 cut(s)	130, 626, 782, 1115
Hsp92II	CATG	3 cut(s)	608, 716, 891
HspAI	GCGC	2 cut(s)	342, 936
Ksp22I	TGATCA	1 cut(s)	715
Kzo9I	GATC	3 cut(s)	199, 715, 965
LmnI	GCTCC	3 cut(s)	339, 709, 795
Lsp1109I	GCAGC	6 cut(s)	85, 88, 91, 94, 531, 574
LweI	GCATC	5 cut(s)	118, 175, 475, 773, 874
MaeI	CTAG	3 cut(s)	816, 881, 969
MaeIII	GTNAC	1 cut(s)	380
MalI	GATC	3 cut(s)	201, 717, 967
MboI	GATC	3 cut(s)	199, 715, 965
MboII	GAAGA	1 cut(s)	262
MfeI	CAATTG	1 cut(s)	1108
MhlI	GDGCHC	1 cut(s)	964
MlsI	TGGCCA	1 cut(s)	603
MluCI	AATT	5 cut(s)	193, 287, 770, 1108, 1147
MluNI	TGGCCA	1 cut(s)	603
MlyI	GAGTC	6 cut(s)	122, 268, 290, 377, 500, 910
MmeI	TCCRAC	2 cut(s)	590, 890
Mox20I	TGGCCA	1 cut(s)	603
Mph1103I	ATGCAT	1 cut(s)	889
MroXI	GAANNNNTTC	1 cut(s)	41
MscI	TGGCCA	1 cut(s)	603
MseI	TTAA	4 cut(s)	549, 572, 641, 1131
MslI	CAYNNNNRTG	1 cut(s)	224
Msp20I	TGGCCA	1 cut(s)	603
MspI	CCGG	1 cut(s)	6
MspR9I	CCNGG	3 cut(s)	471, 684, 835
MunI	CAATTG	1 cut(s)	1108
Mva1269I	GAATGC	3 cut(s)	589, 1076, 1167
MvaI	CCWGG	3 cut(s)	471, 684, 835
MwoI	GCNNNNNNNGC	6 cut(s)	79, 82, 91, 115, 350, 519
NcoI	CCATGG	1 cut(s)	604
NdeII	GATC	3 cut(s)	199, 715, 965
NlaIII	CATG	3 cut(s)	608, 716, 891
NlaIV	GGNNCC	1 cut(s)	649
NmuCI	GTSAC	1 cut(s)	380
NsiI	ATGCAT	1 cut(s)	889
NspI	RCATGY	1 cut(s)	891
OliI	CACNNNNGTG	1 cut(s)	224
PaeI	GCATGC	1 cut(s)	891
PceI	AGGCCT	1 cut(s)	469
PctI	GAATGC	3 cut(s)	589, 1076, 1167
PdmI	GAANNNNTTC	1 cut(s)	41
PfeI	GAWTC	5 cut(s)	25, 37, 323, 1051, 1085
Pfl23II	CGTACG	1 cut(s)	61
PkrI	GCNGC	7 cut(s)	75, 78, 81, 84, 521, 589, 1102
PleI	GAGTC	6 cut(s)	122, 268, 289, 377, 499, 910
PpsI	GAGTC	6 cut(s)	122, 268, 289, 377, 499, 910
Psp6I	CCWGG	3 cut(s)	469, 682, 833
PspGI	CCWGG	3 cut(s)	469, 682, 833
PspLI	CGTACG	1 cut(s)	61
PspN4I	GGNNCC	1 cut(s)	649
PspPI	GGNCC	2 cut(s)	235, 863
PstI	CTGCAG	1 cut(s)	592
PstNI	CAGNNNCTG	1 cut(s)	798
RsaI	GTAC	5 cut(s)	63, 215, 299, 398, 1028
RsaNI	GTAC	5 cut(s)	62, 214, 298, 397, 1027
RseI	CAYNNNNRTG	1 cut(s)	224
SaqAI	TTAA	4 cut(s)	549, 572, 641, 1131
SatI	GCNGC	7 cut(s)	74, 77, 80, 83, 520, 588, 1101
Sau3AI	GATC	3 cut(s)	199, 715, 965
Sau96I	GGNCC	2 cut(s)	235, 863
ScaI	AGTACT	1 cut(s)	398
SchI	GAGTC	6 cut(s)	122, 268, 290, 377, 500, 910
ScrFI	CCNGG	3 cut(s)	471, 684, 835
SduI	GDGCHC	1 cut(s)	964
SfaNI	GCATC	5 cut(s)	118, 175, 475, 773, 874
SfcI	CTRYAG	4 cut(s)	95, 588, 828, 858
SinI	GGWCC	1 cut(s)	863
SmiMI	CAYNNNNRTG	1 cut(s)	224
SmlI	CTYRAG	1 cut(s)	652
SmoI	CTYRAG	1 cut(s)	652
SphI	GCATGC	1 cut(s)	891
Sse9I	AATT	5 cut(s)	193, 287, 770, 1108, 1147
SseBI	AGGCCT	1 cut(s)	469
SsiI	CCGC	4 cut(s)	53, 353, 417, 1100
SspMI	CTAG	3 cut(s)	816, 881, 969
StuI	AGGCCT	1 cut(s)	469
StyD4I	CCNGG	3 cut(s)	469, 682, 833
StyI	CCWWGG	1 cut(s)	604
TaaI	ACNGT	3 cut(s)	140, 155, 350
TaqI	TCGA	3 cut(s)	14, 497, 914
TasI	AATT	5 cut(s)	193, 287, 770, 1108, 1147
TatI	WGTACW	2 cut(s)	213, 396
TauI	GCSGC	1 cut(s)	1103
TfiI	GAWTC	5 cut(s)	25, 37, 323, 1051, 1085
Tru1I	TTAA	4 cut(s)	549, 572, 641, 1131
Tru9I	TTAA	4 cut(s)	549, 572, 641, 1131
TscAI	CASTG	3 cut(s)	108, 529, 956
TseFI	GTSAC	1 cut(s)	380
TseI	GCWGC	6 cut(s)	73, 76, 79, 82, 519, 587
Tsp45I	GTSAC	1 cut(s)	380
TspDTI	ATGAA	3 cut(s)	138, 675, 893
TspGWI	ACGGA	1 cut(s)	285
TspRI	CASTG	3 cut(s)	108, 529, 956
VneI	GTGCAC	1 cut(s)	960
VpaK11BI	GGWCC	1 cut(s)	863
XapI	RAATTY	1 cut(s)	193
XbaI	TCTAGA	1 cut(s)	968
XceI	RCATGY	1 cut(s)	891
XmnI	GAANNNNTTC	1 cut(s)	41
XspI	CTAG	3 cut(s)	816, 881, 969
ZrmI	AGTACT	1 cut(s)	398
Zsp2I	ATGCAT	1 cut(s)	889

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.