Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0019763.1

Orthogroup ID

OG0009360

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1546

Gene Structure 1546 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0019763.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 718 bp

gaagcctggtgatgacagtgatgcagagtcatcaagggagacaagtagtgatggcagcagtgattatggagcagaaagaggaatgaatggtgttgttgatgatgcttggagtcggcagaatattgctgatgtaaatggccatggttggaatagagtcttaccaagagataaacccttaactggttcctcaagtgatgaaagtgagatttgcaatcctccaggtcagcttgtatttcaatatttggagcacgatcaaccgtttggccgtgaacctttggctgataagattcaagttcttgcatcccaatttccagagctgaggacttacaggagctcggacttatcaccttctagttggatctctgtagcatggtatcctatatatcggatacctacaggtccaacattacagagtctggatgcttgcttcttgacctttcattccctttcgactcccttaaagggtacaagcactgataggcttcgtcccagcggtgcacgacctagagaggttcaaaatgccgacttcaaactctcgttgccaacttttggattggcttcctacaagttcaagggttccttttggaaccctaatggagtttacgaatctcaaaaggctaattctctattgcgagcagcggaaaactggctcaggctattgcaagttcatcatcctgatttcaacttctttgtgtcacacaatacaccaaggaggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF789

Protein Analysis

238

Amino Acids

26.65

Weight (kDa)

6.09

Isoelectric Point (pI)

37.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009360)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16100
fragaria_vesca	FvH4_4g19180 FvH4_4g19180
malus_domestica	MD13G1160300.v1.1 MD13G1160400.v1.1 MD16G1159600.v1.1
prunus_persica	Prupe.1G126800_v2.0.a1
pyrus_communis	pycom13g13640 pycom16g13450
rosa_chinensis	RchiOBHm_Chr4g0424141
rosa_laevigata	RLG00000007501
rosa_multiflora	Rmu_sc0002260.1_g000045 Rmu_sc0014711.1_g000001 Rmu_sc0019763.1_g000001 Rmu_sc0019764.1_g000001
rosa_roxburghii	Rroxscaffold_5G00366130
rosa_rugosa	Rorug04G0193400
rosa_samantha	Rh4AG251300 Rh4BG256400 Rh4CG267300 Rh4DG251000
rosa_wichuraiana	Rw4G021670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	549
AciI	CCGC	2 cut(s)	493, 639
AclWI	GGATC	1 cut(s)	366
AcoI	YGGCCR	2 cut(s)	137, 263
AfaI	GTAC	1 cut(s)	467
AfiI	CCNNNNNNNGG	3 cut(s)	180, 462, 549
AgsI	TTSAA	6 cut(s)	237, 291, 516, 530, 572, 683
AjnI	CCWGG	2 cut(s)	5, 218
AluBI	AGCT	3 cut(s)	227, 317, 334
AluI	AGCT	3 cut(s)	227, 317, 334
Alw21I	GWGCWC	3 cut(s)	250, 336, 500
Alw26I	GTCTC	1 cut(s)	33
Alw44I	GTGCAC	1 cut(s)	496
AlwI	GGATC	1 cut(s)	366
AlwNI	CAGNNNCTG	1 cut(s)	416
AoxI	GGCC	2 cut(s)	137, 263
ApaLI	GTGCAC	1 cut(s)	496
ApeKI	GCWGC	2 cut(s)	55, 636
AspS9I	GGNCC	1 cut(s)	399
AsuHPI	GGTGA	2 cut(s)	21, 337
AvaII	GGWCC	1 cut(s)	399
BaeGI	GKGCMC	1 cut(s)	500
BalI	TGGCCA	1 cut(s)	139
BanII	GRGCYC	1 cut(s)	336
Bbv12I	GWGCWC	3 cut(s)	250, 336, 500
BbvCI	CCTCAGC	1 cut(s)	318
BbvI	GCAGC	2 cut(s)	67, 648
BccI	CCATC	1 cut(s)	45
BceAI	ACGGC	1 cut(s)	250
BciT130I	CCWGG	2 cut(s)	7, 220
BciVI	GTATCC	2 cut(s)	382, 385
BcoDI	GTCTC	1 cut(s)	33
BfaI	CTAG	2 cut(s)	352, 505
BfmI	CTRYAG	2 cut(s)	364, 394
BfuI	GTATCC	2 cut(s)	382, 385
BisI	GCNGC	2 cut(s)	56, 637
BlsI	GCNGC	2 cut(s)	57, 638
Bme1390I	CCNGG	2 cut(s)	7, 220
Bme18I	GGWCC	1 cut(s)	399
BmgT120I	GGNCC	1 cut(s)	399
BmiI	GGNNCC	3 cut(s)	185, 578, 588
BmrFI	CCNGG	2 cut(s)	7, 220
BmsI	GCATC	4 cut(s)	11, 92, 309, 410
BpmI	CTGGAG	1 cut(s)	202
Bpu10I	CCTNAGC	2 cut(s)	318, 651
BpuEI	CTTGAG	1 cut(s)	173
BsaJI	CCNNGG	2 cut(s)	140, 708
Bsc4I	CCNNNNNNNGG	3 cut(s)	180, 462, 549
Bse1I	ACTGG	2 cut(s)	185, 651
BseBI	CCWGG	2 cut(s)	7, 220
BseDI	CCNNGG	2 cut(s)	140, 708
BseGI	GGATG	3 cut(s)	300, 425, 671
BseLI	CCNNNNNNNGG	3 cut(s)	180, 462, 549
BseMII	CTCAG	2 cut(s)	309, 665
BseNI	ACTGG	2 cut(s)	185, 651
BseSI	GKGCMC	1 cut(s)	500
BseXI	GCAGC	2 cut(s)	67, 648
BseYI	CCCAGC	1 cut(s)	489
BshFI	GGCC	2 cut(s)	139, 265
BsiHKAI	GWGCWC	3 cut(s)	250, 336, 500
BslFI	GGGAC	1 cut(s)	472
BslI	CCNNNNNNNGG	3 cut(s)	180, 462, 549
BsmAI	GTCTC	1 cut(s)	33
BsmFI	GGGAC	1 cut(s)	472
BsnI	GGCC	2 cut(s)	139, 265
Bsp1286I	GDGCHC	3 cut(s)	250, 336, 500
Bsp143I	GATC	2 cut(s)	251, 358
Bsp19I	CCATGG	1 cut(s)	140
BspACI	CCGC	2 cut(s)	493, 639
BspANI	GGCC	2 cut(s)	139, 265
BspCNI	CTCAG	2 cut(s)	310, 664
BspLI	GGNNCC	3 cut(s)	185, 578, 588
BspPI	GGATC	1 cut(s)	366
BsrI	ACTGG	2 cut(s)	185, 651
BssECI	CCNNGG	2 cut(s)	140, 708
BssMI	GATC	2 cut(s)	251, 358
BssT1I	CCWWGG	2 cut(s)	140, 708
Bst2UI	CCWGG	2 cut(s)	7, 220
Bst4CI	ACNGT	2 cut(s)	18, 259
BstC8I	GCNNGC	2 cut(s)	425, 634
BstDEI	CTNAG	2 cut(s)	318, 651
BstDSI	CCRYGG	1 cut(s)	140
BstF5I	GGATG	3 cut(s)	300, 425, 671
BstKTI	GATC	2 cut(s)	254, 361
BstMAI	GTCTC	1 cut(s)	33
BstMBI	GATC	2 cut(s)	251, 358
BstNI	CCWGG	2 cut(s)	7, 220
BstSCI	CCNGG	2 cut(s)	5, 218
BstSFI	CTRYAG	2 cut(s)	364, 394
BstSLI	GKGCMC	1 cut(s)	500
BstV1I	GCAGC	2 cut(s)	67, 648
BstX2I	RGATCY	1 cut(s)	358
BstYI	RGATCY	1 cut(s)	358
BsuI	GTATCC	2 cut(s)	382, 385
BsuRI	GGCC	2 cut(s)	139, 265
BtgI	CCRYGG	1 cut(s)	140
BtsCI	GGATG	3 cut(s)	300, 425, 671
BtsI	GCAGTG	1 cut(s)	65
BtsIMutI	CAGTG	3 cut(s)	23, 65, 472
Cac8I	GCNNGC	2 cut(s)	425, 634
CaiI	CAGNNNCTG	1 cut(s)	416
Cfr13I	GGNCC	1 cut(s)	399
Csp6I	GTAC	1 cut(s)	466
CviAII	CATG	2 cut(s)	141, 370
CviQI	GTAC	1 cut(s)	466
DdeI	CTNAG	2 cut(s)	318, 651
DpnI	GATC	2 cut(s)	253, 360
DpnII	GATC	2 cut(s)	251, 358
EaeI	YGGCCR	2 cut(s)	137, 263
Ecl136II	GAGCTC	1 cut(s)	334
Eco130I	CCWWGG	2 cut(s)	140, 708
Eco24I	GRGCYC	1 cut(s)	336
Eco47I	GGWCC	1 cut(s)	399
Eco53kI	GAGCTC	1 cut(s)	334
EcoICRI	GAGCTC	1 cut(s)	334
EcoRII	CCWGG	2 cut(s)	5, 218
EcoT14I	CCWWGG	2 cut(s)	140, 708
EcoT38I	GRGCYC	1 cut(s)	336
ErhI	CCWWGG	2 cut(s)	140, 708
FaeI	CATG	2 cut(s)	144, 373
FaiI	YATR	5 cut(s)	67, 142, 371, 381, 383
FalI	AAGNNNNNCTT	2 cut(s)	564, 596
FaqI	GGGAC	1 cut(s)	472
FatI	CATG	2 cut(s)	140, 369
Fnu4HI	GCNGC	2 cut(s)	56, 637
FokI	GGATG	3 cut(s)	287, 432, 658
FriOI	GRGCYC	1 cut(s)	336
Fsp4HI	GCNGC	2 cut(s)	56, 637
FspBI	CTAG	2 cut(s)	352, 505
GluI	GCNGC	2 cut(s)	56, 637
GsaI	CCCAGC	1 cut(s)	493
GsuI	CTGGAG	1 cut(s)	202
HaeIII	GGCC	2 cut(s)	139, 265
Hin1II	CATG	2 cut(s)	144, 373
HinfI	GANTC	7 cut(s)	27, 110, 154, 287, 413, 452, 606
HphI	GGTGA	2 cut(s)	21, 337
Hpy166II	GTNNAC	3 cut(s)	270, 498, 602
Hpy188I	TCNGA	2 cut(s)	338, 388
Hpy188III	TCNNGA	4 cut(s)	312, 417, 431, 675
Hpy8I	GTNNAC	3 cut(s)	270, 498, 602
HpyAV	CCTTC	1 cut(s)	358
HpyCH4III	ACNGT	2 cut(s)	18, 259
HpyCH4V	TGCA	5 cut(s)	24, 211, 300, 498, 662
HpyF3I	CTNAG	2 cut(s)	318, 651
Hsp92II	CATG	2 cut(s)	144, 373
Kzo9I	GATC	2 cut(s)	251, 358
LmnI	GCTCC	3 cut(s)	69, 245, 331
Lsp1109I	GCAGC	2 cut(s)	67, 648
LweI	GCATC	4 cut(s)	11, 92, 309, 410
MaeI	CTAG	2 cut(s)	352, 505
MaeIII	GTNAC	1 cut(s)	694
MalI	GATC	2 cut(s)	253, 360
MboI	GATC	2 cut(s)	251, 358
MflI	RGATCY	1 cut(s)	358
MhlI	GDGCHC	3 cut(s)	250, 336, 500
MlsI	TGGCCA	1 cut(s)	139
MluCI	AATT	2 cut(s)	306, 620
MluNI	TGGCCA	1 cut(s)	139
MlyI	GAGTC	5 cut(s)	36, 119, 163, 422, 446
MmeI	TCCRAC	3 cut(s)	126, 336, 426
MnlI	CCTC	6 cut(s)	72, 197, 226, 313, 503, 706
Mox20I	TGGCCA	1 cut(s)	139
MscI	TGGCCA	1 cut(s)	139
MseI	TTAA	2 cut(s)	177, 459
Msp20I	TGGCCA	1 cut(s)	139
MspA1I	CMGCKG	2 cut(s)	493, 639
MspR9I	CCNGG	2 cut(s)	7, 220
MvaI	CCWGG	2 cut(s)	7, 220
NcoI	CCATGG	1 cut(s)	140
NdeII	GATC	2 cut(s)	251, 358
NlaIII	CATG	2 cut(s)	144, 373
NlaIV	GGNNCC	3 cut(s)	185, 578, 588
NmuCI	GTSAC	1 cut(s)	694
PfeI	GAWTC	2 cut(s)	287, 606
PflMI	CCANNNNNTGG	1 cut(s)	549
PkrI	GCNGC	2 cut(s)	57, 638
PleI	GAGTC	5 cut(s)	35, 118, 162, 421, 446
PpsI	GAGTC	5 cut(s)	35, 118, 162, 421, 446
Psp124BI	GAGCTC	1 cut(s)	336
Psp6I	CCWGG	2 cut(s)	5, 218
PspFI	CCCAGC	1 cut(s)	489
PspGI	CCWGG	2 cut(s)	5, 218
PspN4I	GGNNCC	3 cut(s)	185, 578, 588
PspPI	GGNCC	1 cut(s)	399
PstNI	CAGNNNCTG	1 cut(s)	416
PsuI	RGATCY	1 cut(s)	358
RsaI	GTAC	1 cut(s)	467
RsaNI	GTAC	1 cut(s)	466
SacI	GAGCTC	1 cut(s)	336
SaqAI	TTAA	2 cut(s)	177, 459
SatI	GCNGC	2 cut(s)	56, 637
Sau3AI	GATC	2 cut(s)	251, 358
Sau96I	GGNCC	1 cut(s)	399
SchI	GAGTC	5 cut(s)	36, 119, 163, 422, 446
ScrFI	CCNGG	2 cut(s)	7, 220
SduI	GDGCHC	3 cut(s)	250, 336, 500
SfaNI	GCATC	4 cut(s)	11, 92, 309, 410
SfcI	CTRYAG	2 cut(s)	364, 394
SinI	GGWCC	1 cut(s)	399
SmlI	CTYRAG	1 cut(s)	188
SmoI	CTYRAG	1 cut(s)	188
Sse9I	AATT	2 cut(s)	306, 620
SsiI	CCGC	2 cut(s)	493, 639
SspI	AATATT	2 cut(s)	122, 240
SspMI	CTAG	2 cut(s)	352, 505
SstI	GAGCTC	1 cut(s)	336
StyD4I	CCNGG	2 cut(s)	5, 218
StyI	CCWWGG	2 cut(s)	140, 708
TaaI	ACNGT	2 cut(s)	18, 259
TaqI	TCGA	1 cut(s)	450
TasI	AATT	2 cut(s)	306, 620
TfiI	GAWTC	2 cut(s)	287, 606
Tru1I	TTAA	2 cut(s)	177, 459
Tru9I	TTAA	2 cut(s)	177, 459
TscAI	CASTG	3 cut(s)	23, 65, 479
TseFI	GTSAC	1 cut(s)	694
TseI	GCWGC	2 cut(s)	55, 636
Tsp45I	GTSAC	1 cut(s)	694
TspDTI	ATGAA	4 cut(s)	99, 211, 429, 657
TspRI	CASTG	3 cut(s)	23, 65, 479
Van91I	CCANNNNNTGG	1 cut(s)	549
VneI	GTGCAC	1 cut(s)	496
VpaK11BI	GGWCC	1 cut(s)	399
XspI	CTAG	2 cut(s)	352, 505

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.