Rw4G021670

Protein of unknown function (DUF789)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0009360
Physical Location & Seq
Forward (+)
46361733 .. 46364616
2884 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G021670.1

Sequence Viewer

Length: 1185 bp
ATGTCTGGTCACGGCGGAGTTTCGATCGGTCGGGCTCGGGGCGAGAACCGGTTCTACAACCCGCCCCCGATTCGAGAGCGACAACACCAGCAACTGCTTCAGCAGCGGCCGGTGTCGGTGTCGGTGGTGGAGTCCGACGACTGTGCTACGTCGCATAGTTCCGGGTCGGGTCGGGAAGCGCTCAGCGAGGCCGCGAATTTAGATCGGTTCCTTGAGTTCACAACGCCCCTGGCTCGAGCTCATTTTTTGCCCAAGACGAGTAGCAGGGGATGGAGGACTCATGCGCCGGAGTTACATCCCTACTTTGTGCTTGGAGATTTGTGGGAATCTTTCAAGGAGTGGAGTGCGTACGGCGCGGGCGTCCCTCTTTTGTTAAATGGGAGTGACTCTGTCATACAGTACTATGTACCTTACTTGTCTGCCATTCAGCTCTATGTAGACCCATCAAAGCCTCCCACAAGGATAAGGAAGCCTGGTGATGACAGTGATGCAGAGTCATCAAGGGAGACAAGTAGTGATGGCAGCAGTGATTATGGAGCAGAAAGAGGAATGAATGGTGTTGTTGATGATGCTTGGAGTCGGCAGAATATTGCTGATGTAAATGGCCATGGTTGGAATAGAGTCTTACCAAGAGATAAACCCTTAACTGGTTCCTCAAGTGATGAAAGTGAGATTTGCAATCCTCCAGGTCAGCTTGTATTTCAATATTTGGAGCACGATCAACCGTTTGGCCGTGAACCTTTGGCTGATAAGATTCAAGTTCTTGCATCCCAATTTCCAGAGCTGAGGACTTACAGGAGCTCGGACTTATCACCTTCTAGTTGGATCTCTGTAGCATGGTATCCTATATATCGGATACCTACAGGTCCAACATTACAGAGTCTGGATGCTTGCTTCTTGACCTTTCATTCCCTTTCGACTCCCTTAAAGGGTACAAGCACTGATAGGCTTCGTCCCAGCGGTGCACGACCTAGAGAGGTTCAAAATGCCGACTTCAAACTCTCGTTGCCAACTTTTGGATTGGCTTCCTACAAGTTCAAGGGTTCCTTTTGGAACCCTAATGGAGTTTACGAATCTCAAAAGGCTAATTCTCTATTGCGAGCAGCTGAAAACTGGCTCAGGCTATTGCAAGTTCATCATCCTGATTTCAACTTCTTTGTGTCACACAATACACCAAGGAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF789

Protein Analysis

394

Amino Acids

44.07

Weight (kDa)

6.64

Isoelectric Point (pI)

37.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF789 PF05623 65 - 386 1.1e-105 Protein of unknown function (DUF789)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 1016
AccI GTMKAC 1 cut(s) 438
AccII CGCG 2 cut(s) 194, 356
AciI CCGC 6 cut(s) 15, 62, 106, 192, 356, 960
AclWI GGATC 1 cut(s) 833
AcoI YGGCCR 3 cut(s) 107, 604, 730
AcsI RAATTY 1 cut(s) 196
AcuI CTGAAG 1 cut(s) 83
AcyI GRCGYC 1 cut(s) 360
AfaI GTAC 4 cut(s) 350, 401, 408, 934
AfeI AGCGCT 1 cut(s) 180
AfiI CCNNNNNNNGG 3 cut(s) 647, 929, 1016
AgeI ACCGGT 1 cut(s) 48
AgsI TTSAA 7 cut(s) 334, 704, 758, 983, 997, 1039, 1150
AjnI CCWGG 3 cut(s) 228, 472, 685
AluBI AGCT 6 cut(s) 239, 430, 694, 784, 801, 1106
AluI AGCT 6 cut(s) 239, 430, 694, 784, 801, 1106
Alw21I GWGCWC 4 cut(s) 241, 717, 803, 967
Alw26I GTCTC 1 cut(s) 500
Alw44I GTGCAC 1 cut(s) 963
AlwI GGATC 1 cut(s) 833
AlwNI CAGNNNCTG 2 cut(s) 94, 883
Ama87I CYCGRG 2 cut(s) 36, 234
Aor51HI AGCGCT 1 cut(s) 180
AoxI GGCC 4 cut(s) 107, 189, 604, 730
ApaLI GTGCAC 1 cut(s) 963
ApeKI GCWGC 3 cut(s) 103, 522, 1103
ApoI RAATTY 1 cut(s) 196
AsiGI ACCGGT 1 cut(s) 48
Asp700I GAANNNNTTC 1 cut(s) 50
AspLEI GCGC 3 cut(s) 181, 286, 356
AspS9I GGNCC 1 cut(s) 866
AsuC2I CCSGG 1 cut(s) 163
AsuHPI GGTGA 2 cut(s) 488, 804
AvaI CYCGRG 2 cut(s) 36, 234
AvaII GGWCC 1 cut(s) 866
BaeGI GKGCMC 1 cut(s) 967
BalI TGGCCA 1 cut(s) 606
BanII GRGCYC 3 cut(s) 37, 241, 803
Bbv12I GWGCWC 4 cut(s) 241, 717, 803, 967
BbvCI CCTCAGC 1 cut(s) 785
BbvI GCAGC 3 cut(s) 115, 534, 1115
BccI CCATC 3 cut(s) 264, 451, 512
BceAI ACGGC 3 cut(s) 28, 367, 717
BcgI CGANNNNNNTGC 2 cut(s) 125, 159
BciT130I CCWGG 3 cut(s) 230, 474, 687
BciVI GTATCC 2 cut(s) 849, 852
BcnI CCSGG 1 cut(s) 163
BcoDI GTCTC 1 cut(s) 500
BfaI CTAG 2 cut(s) 819, 972
BfmI CTRYAG 2 cut(s) 831, 861
BfoI RGCGCY 1 cut(s) 182
BfuI GTATCC 2 cut(s) 849, 852
BisI GCNGC 5 cut(s) 104, 107, 192, 523, 1104
BlpI GCTNAGC 1 cut(s) 182
BlsI GCNGC 5 cut(s) 105, 108, 193, 524, 1105
BmcAI AGTACT 1 cut(s) 401
Bme1390I CCNGG 4 cut(s) 163, 230, 474, 687
Bme18I GGWCC 1 cut(s) 866
BmeT110I CYCGRG 2 cut(s) 36, 234
BmgT120I GGNCC 1 cut(s) 866
BmiI GGNNCC 4 cut(s) 209, 652, 1045, 1055
BmrFI CCNGG 4 cut(s) 163, 230, 474, 687
BmsI GCATC 4 cut(s) 478, 559, 776, 877
BpmI CTGGAG 1 cut(s) 669
Bpu10I CCTNAGC 2 cut(s) 785, 1118
Bpu1102I GCTNAGC 1 cut(s) 182
BpuEI CTTGAG 2 cut(s) 233, 640
BpuMI CCSGG 1 cut(s) 163
BsaHI GRCGYC 1 cut(s) 360
BsaJI CCNNGG 3 cut(s) 228, 607, 1175
BsaWI WCCGGW 1 cut(s) 48
Bsc4I CCNNNNNNNGG 3 cut(s) 647, 929, 1016
Bse118I RCCGGY 2 cut(s) 48, 109
Bse1I ACTGG 2 cut(s) 652, 1118
BseBI CCWGG 3 cut(s) 230, 474, 687
BseDI CCNNGG 3 cut(s) 228, 607, 1175
BseGI GGATG 5 cut(s) 275, 295, 767, 892, 1138
BseLI CCNNNNNNNGG 3 cut(s) 647, 929, 1016
BseMII CTCAG 3 cut(s) 196, 776, 1132
BseNI ACTGG 2 cut(s) 652, 1118
BseSI GKGCMC 1 cut(s) 967
BseX3I CGGCCG 1 cut(s) 107
BseXI GCAGC 3 cut(s) 115, 534, 1115
BseYI CCCAGC 1 cut(s) 956
Bsh1236I CGCG 2 cut(s) 194, 356
Bsh1285I CGRYCG 3 cut(s) 27, 31, 110
BshFI GGCC 4 cut(s) 109, 191, 606, 732
BshTI ACCGGT 1 cut(s) 48
BsiEI CGRYCG 3 cut(s) 27, 31, 110
BsiHKAI GWGCWC 4 cut(s) 241, 717, 803, 967
BsiHKCI CYCGRG 2 cut(s) 36, 234
BsiSI CCGG 4 cut(s) 49, 110, 162, 287
BsiWI CGTACG 1 cut(s) 348
BslFI GGGAC 2 cut(s) 347, 939
BslI CCNNNNNNNGG 3 cut(s) 647, 929, 1016
BsmAI GTCTC 1 cut(s) 500
BsmFI GGGAC 2 cut(s) 347, 939
BsnI GGCC 4 cut(s) 109, 191, 606, 732
BsoBI CYCGRG 2 cut(s) 36, 234
Bsp1286I GDGCHC 5 cut(s) 37, 241, 717, 803, 967
Bsp143I GATC 4 cut(s) 24, 202, 718, 825
Bsp1720I GCTNAGC 1 cut(s) 182
Bsp19I CCATGG 1 cut(s) 607
BspACI CCGC 6 cut(s) 15, 62, 106, 192, 356, 960
BspANI GGCC 4 cut(s) 109, 191, 606, 732
BspCNI CTCAG 3 cut(s) 195, 777, 1131
BspFNI CGCG 2 cut(s) 194, 356
BspLI GGNNCC 4 cut(s) 209, 652, 1045, 1055
BspPI GGATC 1 cut(s) 833
BsrFI RCCGGY 2 cut(s) 48, 109
BsrI ACTGG 2 cut(s) 652, 1118
BssAI RCCGGY 2 cut(s) 48, 109
BssECI CCNNGG 3 cut(s) 228, 607, 1175
BssMI GATC 4 cut(s) 24, 202, 718, 825
BssNI GRCGYC 1 cut(s) 360
BssT1I CCWWGG 2 cut(s) 607, 1175
Bst2UI CCWGG 3 cut(s) 230, 474, 687
Bst4CI ACNGT 4 cut(s) 143, 399, 485, 726
BstACI GRCGYC 1 cut(s) 360
BstC8I GCNNGC 3 cut(s) 358, 892, 1101
BstDEI CTNAG 3 cut(s) 182, 785, 1118
BstDSI CCRYGG 1 cut(s) 607
BstF5I GGATG 5 cut(s) 275, 295, 767, 892, 1138
BstFNI CGCG 2 cut(s) 194, 356
BstH2I RGCGCY 1 cut(s) 182
BstHHI GCGC 3 cut(s) 181, 286, 356
BstKTI GATC 4 cut(s) 27, 205, 721, 828
BstMAI GTCTC 1 cut(s) 500
BstMBI GATC 4 cut(s) 24, 202, 718, 825
BstMCI CGRYCG 3 cut(s) 27, 31, 110
BstMWI GCNNNNNNNGC 2 cut(s) 103, 353
BstNI CCWGG 3 cut(s) 230, 474, 687
BstSCI CCNGG 4 cut(s) 161, 228, 472, 685
BstSFI CTRYAG 2 cut(s) 831, 861
BstSLI GKGCMC 1 cut(s) 967
BstUI CGCG 2 cut(s) 194, 356
BstV1I GCAGC 3 cut(s) 115, 534, 1115
BstX2I RGATCY 1 cut(s) 825
BstYI RGATCY 1 cut(s) 825
BstZI CGGCCG 1 cut(s) 107
BsuI GTATCC 2 cut(s) 849, 852
BsuRI GGCC 4 cut(s) 109, 191, 606, 732
BtgI CCRYGG 1 cut(s) 607
BtsCI GGATG 5 cut(s) 275, 295, 767, 892, 1138
BtsI GCAGTG 1 cut(s) 532
BtsIMutI CAGTG 3 cut(s) 490, 532, 939
Cac8I GCNNGC 3 cut(s) 358, 892, 1101
CaiI CAGNNNCTG 2 cut(s) 94, 883
CfoI GCGC 3 cut(s) 181, 286, 356
Cfr10I RCCGGY 2 cut(s) 48, 109
Cfr13I GGNCC 1 cut(s) 866
CseI GACGC 1 cut(s) 349
Csp6I GTAC 4 cut(s) 349, 400, 407, 933
CspAI ACCGGT 1 cut(s) 48
CviAII CATG 3 cut(s) 281, 608, 837
CviQI GTAC 4 cut(s) 349, 400, 407, 933
DdeI CTNAG 3 cut(s) 182, 785, 1118
DpnI GATC 4 cut(s) 26, 204, 720, 827
DpnII GATC 4 cut(s) 24, 202, 718, 825
EaeI YGGCCR 3 cut(s) 107, 604, 730
EagI CGGCCG 1 cut(s) 107
EciI GGCGGA 1 cut(s) 30
Ecl136II GAGCTC 2 cut(s) 239, 801
EclXI CGGCCG 1 cut(s) 107
Eco130I CCWWGG 2 cut(s) 607, 1175
Eco24I GRGCYC 3 cut(s) 37, 241, 803
Eco47I GGWCC 1 cut(s) 866
Eco47III AGCGCT 1 cut(s) 180
Eco52I CGGCCG 1 cut(s) 107
Eco53kI GAGCTC 2 cut(s) 239, 801
Eco57I CTGAAG 1 cut(s) 83
Eco88I CYCGRG 2 cut(s) 36, 234
EcoICRI GAGCTC 2 cut(s) 239, 801
EcoRII CCWGG 3 cut(s) 228, 472, 685
EcoT14I CCWWGG 2 cut(s) 607, 1175
EcoT38I GRGCYC 3 cut(s) 37, 241, 803
ErhI CCWWGG 2 cut(s) 607, 1175
FaeI CATG 3 cut(s) 284, 611, 840
FalI AAGNNNNNCTT 2 cut(s) 1031, 1063
FaqI GGGAC 2 cut(s) 347, 939
FatI CATG 3 cut(s) 280, 607, 836
FauI CCCGC 2 cut(s) 69, 349
FblI GTMKAC 1 cut(s) 438
Fnu4HI GCNGC 5 cut(s) 104, 107, 192, 523, 1104
FokI GGATG 5 cut(s) 282, 282, 754, 899, 1125
FriOI GRGCYC 3 cut(s) 37, 241, 803
Fsp4HI GCNGC 5 cut(s) 104, 107, 192, 523, 1104
FspBI CTAG 2 cut(s) 819, 972
GlaI GCGC 3 cut(s) 180, 285, 355
GluI GCNGC 5 cut(s) 104, 107, 192, 523, 1104
GsaI CCCAGC 1 cut(s) 960
GsuI CTGGAG 1 cut(s) 669
HaeII RGCGCY 1 cut(s) 182
HaeIII GGCC 4 cut(s) 109, 191, 606, 732
HapII CCGG 4 cut(s) 49, 110, 162, 287
HgaI GACGC 1 cut(s) 349
HhaI GCGC 3 cut(s) 181, 286, 356
Hin1I GRCGYC 1 cut(s) 360
Hin1II CATG 3 cut(s) 284, 611, 840
Hin6I GCGC 3 cut(s) 179, 284, 354
HinP1I GCGC 3 cut(s) 179, 284, 354
HpaII CCGG 4 cut(s) 49, 110, 162, 287
HphI GGTGA 2 cut(s) 488, 804
Hpy166II GTNNAC 5 cut(s) 219, 439, 737, 965, 1069
Hpy188I TCNGA 3 cut(s) 136, 805, 855
Hpy188III TCNNGA 6 cut(s) 74, 173, 779, 884, 898, 1142
Hpy8I GTNNAC 5 cut(s) 219, 439, 737, 965, 1069
Hpy99I CGWCG 2 cut(s) 140, 154
HpyAV CCTTC 1 cut(s) 825
HpyCH4III ACNGT 4 cut(s) 143, 399, 485, 726
HpyCH4IV ACGT 1 cut(s) 149
HpyCH4V TGCA 5 cut(s) 491, 678, 767, 965, 1129
HpyF10VI GCNNNNNNNGC 2 cut(s) 103, 353
HpyF3I CTNAG 3 cut(s) 182, 785, 1118
HpySE526I ACGT 1 cut(s) 149
Hsp92I GRCGYC 1 cut(s) 360
Hsp92II CATG 3 cut(s) 284, 611, 840
HspAI GCGC 3 cut(s) 179, 284, 354
Kzo9I GATC 4 cut(s) 24, 202, 718, 825
LmnI GCTCC 3 cut(s) 536, 712, 798
Lsp1109I GCAGC 3 cut(s) 115, 534, 1115
LweI GCATC 4 cut(s) 478, 559, 776, 877
MaeI CTAG 2 cut(s) 819, 972
MaeII ACGT 1 cut(s) 149
MaeIII GTNAC 4 cut(s) 8, 291, 383, 1161
MalI GATC 4 cut(s) 26, 204, 720, 827
MboI GATC 4 cut(s) 24, 202, 718, 825
MflI RGATCY 1 cut(s) 825
MhlI GDGCHC 5 cut(s) 37, 241, 717, 803, 967
MlsI TGGCCA 1 cut(s) 606
MluCI AATT 3 cut(s) 196, 773, 1087
MluNI TGGCCA 1 cut(s) 606
MlyI GAGTC 8 cut(s) 140, 271, 380, 503, 586, 630, 889, 913
MmeI TCCRAC 4 cut(s) 159, 593, 803, 893
Mox20I TGGCCA 1 cut(s) 606
MroXI GAANNNNTTC 1 cut(s) 50
MscI TGGCCA 1 cut(s) 606
MseI TTAA 3 cut(s) 374, 644, 926
Msp20I TGGCCA 1 cut(s) 606
MspA1I CMGCKG 3 cut(s) 106, 960, 1106
MspI CCGG 4 cut(s) 49, 110, 162, 287
MspR9I CCNGG 4 cut(s) 163, 230, 474, 687
MvaI CCWGG 3 cut(s) 230, 474, 687
MvnI CGCG 2 cut(s) 194, 356
MwoI GCNNNNNNNGC 2 cut(s) 103, 353
NciI CCSGG 1 cut(s) 163
NcoI CCATGG 1 cut(s) 607
NdeII GATC 4 cut(s) 24, 202, 718, 825
NlaIII CATG 3 cut(s) 284, 611, 840
NlaIV GGNNCC 4 cut(s) 209, 652, 1045, 1055
NmuCI GTSAC 3 cut(s) 8, 383, 1161
PaeR7I CTCGAG 1 cut(s) 234
PcsI WCGNNNNNNNCGW 1 cut(s) 357
PdmI GAANNNNTTC 1 cut(s) 50
PfeI GAWTC 4 cut(s) 70, 326, 754, 1073
Pfl23II CGTACG 1 cut(s) 348
PflFI GACNNNGTC 1 cut(s) 389
PflMI CCANNNNNTGG 1 cut(s) 1016
PinAI ACCGGT 1 cut(s) 48
PkrI GCNGC 5 cut(s) 105, 108, 193, 524, 1105
Ple19I CGATCG 1 cut(s) 27
PleI GAGTC 8 cut(s) 139, 271, 380, 502, 585, 629, 888, 913
PpsI GAGTC 8 cut(s) 139, 271, 380, 502, 585, 629, 888, 913
Psp124BI GAGCTC 2 cut(s) 241, 803
Psp6I CCWGG 3 cut(s) 228, 472, 685
PspFI CCCAGC 1 cut(s) 956
PspGI CCWGG 3 cut(s) 228, 472, 685
PspLI CGTACG 1 cut(s) 348
PspN4I GGNNCC 4 cut(s) 209, 652, 1045, 1055
PspPI GGNCC 1 cut(s) 866
PspXI VCTCGAGB 1 cut(s) 234
PsrI GAACNNNNNNTAC 2 cut(s) 38, 70
PstNI CAGNNNCTG 2 cut(s) 94, 883
PsuI RGATCY 1 cut(s) 825
PsyI GACNNNGTC 1 cut(s) 389
PvuI CGATCG 1 cut(s) 27
PvuII CAGCTG 1 cut(s) 1106
RsaI GTAC 4 cut(s) 350, 401, 408, 934
RsaNI GTAC 4 cut(s) 349, 400, 407, 933
SacI GAGCTC 2 cut(s) 241, 803
SaqAI TTAA 3 cut(s) 374, 644, 926
SatI GCNGC 5 cut(s) 104, 107, 192, 523, 1104
Sau3AI GATC 4 cut(s) 24, 202, 718, 825
Sau96I GGNCC 1 cut(s) 866
ScaI AGTACT 1 cut(s) 401
SchI GAGTC 8 cut(s) 140, 271, 380, 503, 586, 630, 889, 913
ScrFI CCNGG 4 cut(s) 163, 230, 474, 687
SduI GDGCHC 5 cut(s) 37, 241, 717, 803, 967
SfaNI GCATC 4 cut(s) 478, 559, 776, 877
SfcI CTRYAG 2 cut(s) 831, 861
Sfr274I CTCGAG 1 cut(s) 234
SinI GGWCC 1 cut(s) 866
SlaI CTCGAG 1 cut(s) 234
SmlI CTYRAG 3 cut(s) 212, 234, 655
SmoI CTYRAG 3 cut(s) 212, 234, 655
Sse9I AATT 3 cut(s) 196, 773, 1087
SsiI CCGC 6 cut(s) 15, 62, 106, 192, 356, 960
SspI AATATT 2 cut(s) 589, 707
SspMI CTAG 2 cut(s) 819, 972
SstI GAGCTC 2 cut(s) 241, 803
StyD4I CCNGG 4 cut(s) 161, 228, 472, 685
StyI CCWWGG 2 cut(s) 607, 1175
TaaI ACNGT 4 cut(s) 143, 399, 485, 726
TaiI ACGT 1 cut(s) 152
TaqI TCGA 4 cut(s) 23, 73, 235, 917
TaqII GACCGA 1 cut(s) 17
TasI AATT 3 cut(s) 196, 773, 1087
TatI WGTACW 1 cut(s) 399
TauI GCSGC 2 cut(s) 109, 194
TfiI GAWTC 4 cut(s) 70, 326, 754, 1073
Tru1I TTAA 3 cut(s) 374, 644, 926
Tru9I TTAA 3 cut(s) 374, 644, 926
TscAI CASTG 3 cut(s) 490, 532, 946
TseFI GTSAC 3 cut(s) 8, 383, 1161
TseI GCWGC 3 cut(s) 103, 522, 1103
Tsp45I GTSAC 3 cut(s) 8, 383, 1161
TspDTI ATGAA 4 cut(s) 566, 678, 896, 1124
TspRI CASTG 3 cut(s) 490, 532, 946
Tth111I GACNNNGTC 1 cut(s) 389
Van91I CCANNNNNTGG 1 cut(s) 1016
VneI GTGCAC 1 cut(s) 963
VpaK11BI GGWCC 1 cut(s) 866
XapI RAATTY 1 cut(s) 196
XhoI CTCGAG 1 cut(s) 234
XmiI GTMKAC 1 cut(s) 438
XmnI GAANNNNTTC 1 cut(s) 50
XspI CTAG 2 cut(s) 819, 972
ZrmI AGTACT 1 cut(s) 401
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.