AT4G16146

Belongs to the endosulfine family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0011376
Physical Location & Seq
Reverse (-)
9142072 .. 9144583
2512 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G16146.1

Sequence Viewer

Length: 309 bp
ATGGCGACGGATTGCAATAGAGTCAACGATTTCTTGTTTTCTCAGCAGCAAGAGTCTACTTCTGGTGCAAATAAATACGGAGGACTTGTGCCAAAGAAAAAGCCTCTCATCTCTAAGGATTCCAAACGTGCTTTCTTTGATTCAGCAGATTGGGCTTTACTCAAGCAAGAAGCAAGTATAGATCAGAGAACAATAGCGGCAATAGAAAAACTAAGACCCAAATTGCAGAGAACGCCTCGCAAGCAACTTTCTCCTAGGAGACCCACATGTGCGACGGGAAATGAGAATCTGACAGAGTCGAGCTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Endosulfine

Protein Analysis

102

Amino Acids

11.47

Weight (kDa)

9.8

Isoelectric Point (pI)

58.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Endosulfine PF04667 13 - 89 1.2e-23 cAMP-regulated phosphoprotein/endosulfine conserved region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0011376)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G16146
fragaria_vesca FvH4_4g19340 FvH4_4g19340
malus_domestica MD13G1157500.v1.1 MD16G1158400.v1.1
prunus_persica Prupe.1G123200_v2.0.a1
pyrus_communis pycom13g13480 pycom16g13330
rosa_chinensis RchiOBHm_Chr4g0424361
rosa_laevigata RLG00000007480
rosa_multiflora Rmu_sc0005995.1_g000008
rosa_roxburghii Rroxscaffold_5G00366310
rosa_rugosa Rorug04G0196800 Rorug04G0196900 Rorug04G0197000
rosa_samantha Rh4AG253100 Rh4BG258500 Rh4CG269600 Rh4DG252900
rosa_wichuraiana Rw4G021830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 56
AciI CCGC 1 cut(s) 197
AflIII ACRYGT 1 cut(s) 266
AjuI GAANNNNNNNTTGG 2 cut(s) 116, 148
AluBI AGCT 1 cut(s) 303
AluI AGCT 1 cut(s) 303
Alw26I GTCTC 1 cut(s) 253
ApeKI GCWGC 1 cut(s) 46
AspA2I CCTAGG 1 cut(s) 254
AvrII CCTAGG 1 cut(s) 254
BbvI GCAGC 1 cut(s) 58
BcoDI GTCTC 1 cut(s) 253
BfaI CTAG 1 cut(s) 255
BisI GCNGC 2 cut(s) 47, 198
BlnI CCTAGG 1 cut(s) 254
BlsI GCNGC 2 cut(s) 48, 199
BplI GAGNNNNNCTC 2 cut(s) 220, 252
BpuEI CTTGAG 1 cut(s) 146
BsaI GGTCTC 1 cut(s) 253
BsaJI CCNNGG 1 cut(s) 254
BsaXI ACNNNNNCTCC 2 cut(s) 72, 102
BseDI CCNNGG 1 cut(s) 254
BseMII CTCAG 1 cut(s) 56
BseXI GCAGC 1 cut(s) 58
BsmAI GTCTC 1 cut(s) 253
Bso31I GGTCTC 1 cut(s) 253
Bsp143I GATC 1 cut(s) 181
BspACI CCGC 1 cut(s) 197
BspCNI CTCAG 1 cut(s) 55
BspTNI GGTCTC 1 cut(s) 253
BssECI CCNNGG 1 cut(s) 254
BssMI GATC 1 cut(s) 181
BssT1I CCWWGG 1 cut(s) 254
BstC8I GCNNGC 1 cut(s) 242
BstDEI CTNAG 3 cut(s) 42, 114, 212
BstKTI GATC 1 cut(s) 184
BstMAI GTCTC 1 cut(s) 253
BstMBI GATC 1 cut(s) 181
BstMWI GCNNNNNNNGC 3 cut(s) 152, 232, 241
BstNSI RCATGY 1 cut(s) 270
BstV1I GCAGC 1 cut(s) 58
Cac8I GCNNGC 1 cut(s) 242
CviAII CATG 1 cut(s) 267
CviJI RGCY 3 cut(s) 103, 155, 303
CviKI_1 RGCY 3 cut(s) 103, 155, 303
DdeI CTNAG 3 cut(s) 42, 114, 212
DpnI GATC 1 cut(s) 183
DpnII GATC 1 cut(s) 181
Eco130I CCWWGG 1 cut(s) 254
Eco31I GGTCTC 1 cut(s) 253
EcoT14I CCWWGG 1 cut(s) 254
ErhI CCWWGG 1 cut(s) 254
FaeI CATG 1 cut(s) 270
FaiI YATR 2 cut(s) 179, 268
FatI CATG 1 cut(s) 266
FblI GTMKAC 1 cut(s) 56
Fnu4HI GCNGC 2 cut(s) 47, 198
Fsp4HI GCNGC 2 cut(s) 47, 198
FspBI CTAG 1 cut(s) 255
GluI GCNGC 2 cut(s) 47, 198
Hin1II CATG 1 cut(s) 270
HincII GTYRAC 1 cut(s) 25
HindII GTYRAC 1 cut(s) 25
HinfI GANTC 6 cut(s) 21, 53, 119, 140, 286, 296
Hpy166II GTNNAC 2 cut(s) 25, 57
Hpy188I TCNGA 2 cut(s) 186, 291
Hpy8I GTNNAC 2 cut(s) 25, 57
Hpy99I CGWCG 2 cut(s) 10, 277
HpyCH4IV ACGT 1 cut(s) 127
HpyCH4V TGCA 3 cut(s) 15, 68, 226
HpyF10VI GCNNNNNNNGC 3 cut(s) 152, 232, 241
HpyF3I CTNAG 3 cut(s) 42, 114, 212
HpySE526I ACGT 1 cut(s) 127
Hsp92II CATG 1 cut(s) 270
Kzo9I GATC 1 cut(s) 181
LpnPI CCDG 1 cut(s) 48
Lsp1109I GCAGC 1 cut(s) 58
MaeI CTAG 1 cut(s) 255
MaeII ACGT 1 cut(s) 127
MalI GATC 1 cut(s) 183
MboI GATC 1 cut(s) 181
MluCI AATT 1 cut(s) 221
MlyI GAGTC 3 cut(s) 30, 62, 305
MnlI CCTC 3 cut(s) 74, 114, 246
MwoI GCNNNNNNNGC 3 cut(s) 152, 232, 241
NdeII GATC 1 cut(s) 181
NlaIII CATG 1 cut(s) 270
NspI RCATGY 1 cut(s) 270
PciI ACATGT 1 cut(s) 266
PfeI GAWTC 3 cut(s) 119, 140, 286
PflFI GACNNNGTC 1 cut(s) 295
PkrI GCNGC 2 cut(s) 48, 199
PleI GAGTC 3 cut(s) 29, 61, 304
PpsI GAGTC 3 cut(s) 29, 61, 304
PscI ACATGT 1 cut(s) 266
PsyI GACNNNGTC 1 cut(s) 295
SatI GCNGC 2 cut(s) 47, 198
Sau3AI GATC 1 cut(s) 181
SchI GAGTC 3 cut(s) 30, 62, 305
SetI ASST 2 cut(s) 130, 305
SmlI CTYRAG 1 cut(s) 161
SmoI CTYRAG 1 cut(s) 161
Sse9I AATT 1 cut(s) 221
SsiI CCGC 1 cut(s) 197
SspMI CTAG 1 cut(s) 255
StyI CCWWGG 1 cut(s) 254
TaiI ACGT 1 cut(s) 130
TaqI TCGA 1 cut(s) 299
TasI AATT 1 cut(s) 221
TauI GCSGC 1 cut(s) 200
TfiI GAWTC 3 cut(s) 119, 140, 286
TseI GCWGC 1 cut(s) 46
TspGWI ACGGA 2 cut(s) 23, 93
Tth111I GACNNNGTC 1 cut(s) 295
XceI RCATGY 1 cut(s) 270
XmaJI CCTAGG 1 cut(s) 254
XmiI GTMKAC 1 cut(s) 56
XspI CTAG 1 cut(s) 255
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.