pycom13g13480

Belongs to the endosulfine family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0011376
Physical Location & Seq
Forward (+)
9491352 .. 9494980
3629 bp
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UTR
Exon/CDS
Intron
pycom13g13480.1

Sequence Viewer

Length: 408 bp
ATGATATTTAGTGTACTAAACTGTATTCTCAATACATTGAAAAATATCTCGTTAATTTGGACTTTCTACATTGTATATCATAAGTATTTATATTCTTATCTTACCCTCTCACTCAACCTTCATTCCTCATCTCTCTCTCTCTCTCTCTCTCTCCCTCCCCTTTATTTCCTTTTGCAACTTGTCCTCTCAACATTTCTGTTGCATCTCTCACTTTGCTCTTCCACAAGGAGAGCTGAGATGGAGGATTGCAACAGAGGCCAAGACTATTTCGCTGCCCAAGACCATGAGTCAGCAGCTGCCAACAAATATGGAGGACTTGCGCCAAAGAAGAAGCCTTTGATTTCAAAGGATCATGAACGTGCCTTCTTTGATTCAGCAGATTGGGCACTCTGCAAGGTGCAGGGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Endosulfine

Protein Analysis

136

Amino Acids

15.36

Weight (kDa)

8.34

Isoelectric Point (pI)

39.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Endosulfine PF04667 91 - 133 1.1e-15 cAMP-regulated phosphoprotein/endosulfine conserved region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0011376)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G16146
fragaria_vesca FvH4_4g19340 FvH4_4g19340
malus_domestica MD13G1157500.v1.1 MD16G1158400.v1.1
prunus_persica Prupe.1G123200_v2.0.a1
pyrus_communis pycom13g13480 pycom16g13330
rosa_chinensis RchiOBHm_Chr4g0424361
rosa_laevigata RLG00000007480
rosa_multiflora Rmu_sc0005995.1_g000008
rosa_roxburghii Rroxscaffold_5G00366310
rosa_rugosa Rorug04G0196800 Rorug04G0196900 Rorug04G0197000
rosa_samantha Rh4AG253100 Rh4BG258500 Rh4CG269600 Rh4DG252900
rosa_wichuraiana Rw4G021830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 357
AfaI GTAC 1 cut(s) 15
AgsI TTSAA 2 cut(s) 40, 345
AhdI GACNNNNNGTC 1 cut(s) 286
AluBI AGCT 2 cut(s) 233, 296
AluI AGCT 2 cut(s) 233, 296
AlwI GGATC 1 cut(s) 357
AlwNI CAGNNNCTG 1 cut(s) 296
AoxI GGCC 1 cut(s) 256
ApeKI GCWGC 3 cut(s) 272, 293, 296
AspLEI GCGC 1 cut(s) 322
BaeGI GKGCMC 1 cut(s) 388
BbvI GCAGC 3 cut(s) 259, 283, 305
BccI CCATC 1 cut(s) 232
BisI GCNGC 3 cut(s) 273, 294, 297
BlsI GCNGC 3 cut(s) 274, 295, 298
BmeRI GACNNNNNGTC 1 cut(s) 286
BmsI GCATC 1 cut(s) 211
BseMII CTCAG 1 cut(s) 225
BseSI GKGCMC 1 cut(s) 388
BseXI GCAGC 3 cut(s) 259, 283, 305
BshFI GGCC 1 cut(s) 258
BsnI GGCC 1 cut(s) 258
Bsp1286I GDGCHC 1 cut(s) 388
Bsp143I GATC 1 cut(s) 349
BspANI GGCC 1 cut(s) 258
BspCNI CTCAG 1 cut(s) 226
BspHI TCATGA 1 cut(s) 352
BspPI GGATC 1 cut(s) 357
BspQI GCTCTTC 1 cut(s) 223
BssMI GATC 1 cut(s) 349
Bst4CI ACNGT 1 cut(s) 23
Bst6I CTCTTC 1 cut(s) 223
BstDEI CTNAG 1 cut(s) 234
BstHHI GCGC 1 cut(s) 322
BstKTI GATC 1 cut(s) 352
BstMBI GATC 1 cut(s) 349
BstMWI GCNNNNNNNGC 2 cut(s) 255, 383
BstSLI GKGCMC 1 cut(s) 388
BstV1I GCAGC 3 cut(s) 259, 283, 305
BsuRI GGCC 1 cut(s) 258
CaiI CAGNNNCTG 1 cut(s) 296
CciI TCATGA 1 cut(s) 352
CfoI GCGC 1 cut(s) 322
Csp6I GTAC 1 cut(s) 14
CviAII CATG 2 cut(s) 284, 353
CviJI RGCY 4 cut(s) 233, 258, 296, 334
CviKI_1 RGCY 4 cut(s) 233, 258, 296, 334
CviQI GTAC 1 cut(s) 14
DdeI CTNAG 1 cut(s) 234
DpnI GATC 1 cut(s) 351
DpnII GATC 1 cut(s) 349
DriI GACNNNNNGTC 1 cut(s) 286
Eam1104I CTCTTC 1 cut(s) 223
Eam1105I GACNNNNNGTC 1 cut(s) 286
EarI CTCTTC 1 cut(s) 223
FaeI CATG 2 cut(s) 287, 356
FaiI YATR 6 cut(s) 76, 81, 91, 285, 309, 354
FatI CATG 2 cut(s) 283, 352
Fnu4HI GCNGC 3 cut(s) 273, 294, 297
Fsp4HI GCNGC 3 cut(s) 273, 294, 297
GlaI GCGC 1 cut(s) 321
GluI GCNGC 3 cut(s) 273, 294, 297
HaeIII GGCC 1 cut(s) 258
HhaI GCGC 1 cut(s) 322
Hin1II CATG 2 cut(s) 287, 356
Hin6I GCGC 1 cut(s) 320
HinP1I GCGC 1 cut(s) 320
HinfI GANTC 2 cut(s) 287, 371
Hpy166II GTNNAC 1 cut(s) 14
Hpy188III TCNNGA 1 cut(s) 353
Hpy8I GTNNAC 1 cut(s) 14
HpyAV CCTTC 2 cut(s) 128, 373
HpyCH4III ACNGT 1 cut(s) 23
HpyCH4IV ACGT 1 cut(s) 358
HpyCH4V TGCA 5 cut(s) 175, 202, 249, 393, 400
HpyF10VI GCNNNNNNNGC 2 cut(s) 255, 383
HpyF3I CTNAG 1 cut(s) 234
HpySE526I ACGT 1 cut(s) 358
Hsp92II CATG 2 cut(s) 287, 356
HspAI GCGC 1 cut(s) 320
Kzo9I GATC 1 cut(s) 349
LguI GCTCTTC 1 cut(s) 223
LpnPI CCDG 1 cut(s) 386
Lsp1109I GCAGC 3 cut(s) 259, 283, 305
LweI GCATC 1 cut(s) 211
MaeII ACGT 1 cut(s) 358
MalI GATC 1 cut(s) 351
MboI GATC 1 cut(s) 349
MboII GAAGA 2 cut(s) 210, 340
MhlI GDGCHC 1 cut(s) 388
MluCI AATT 1 cut(s) 54
MlyI GAGTC 1 cut(s) 296
MnlI CCTC 7 cut(s) 116, 136, 165, 194, 235, 248, 305
MseI TTAA 1 cut(s) 53
MslI CAYNNNNRTG 1 cut(s) 357
MspA1I CMGCKG 1 cut(s) 296
MwoI GCNNNNNNNGC 2 cut(s) 255, 383
NdeII GATC 1 cut(s) 349
NlaIII CATG 2 cut(s) 287, 356
PagI TCATGA 1 cut(s) 352
PciSI GCTCTTC 1 cut(s) 223
PfeI GAWTC 1 cut(s) 371
PkrI GCNGC 3 cut(s) 274, 295, 298
PleI GAGTC 1 cut(s) 295
PpsI GAGTC 1 cut(s) 295
PstNI CAGNNNCTG 1 cut(s) 296
PvuII CAGCTG 1 cut(s) 296
RsaI GTAC 1 cut(s) 15
RsaNI GTAC 1 cut(s) 14
RseI CAYNNNNRTG 1 cut(s) 357
SapI GCTCTTC 1 cut(s) 223
SaqAI TTAA 1 cut(s) 53
SatI GCNGC 3 cut(s) 273, 294, 297
Sau3AI GATC 1 cut(s) 349
SchI GAGTC 1 cut(s) 296
SduI GDGCHC 1 cut(s) 388
SetI ASST 5 cut(s) 120, 235, 298, 361, 399
SfaNI GCATC 1 cut(s) 211
SgeI CNNG 9 cut(s) 61, 191, 237, 272, 290, 296, 329, 365, 371
SmiMI CAYNNNNRTG 1 cut(s) 357
Sse9I AATT 1 cut(s) 54
TaaI ACNGT 1 cut(s) 23
TaiI ACGT 1 cut(s) 361
TasI AATT 1 cut(s) 54
TatI WGTACW 1 cut(s) 13
TfiI GAWTC 1 cut(s) 371
Tru1I TTAA 1 cut(s) 53
Tru9I TTAA 1 cut(s) 53
TseI GCWGC 3 cut(s) 272, 293, 296
TspDTI ATGAA 2 cut(s) 110, 369
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.