Rh4BG258500

Belongs to the endosulfine family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0011376
Physical Location & Seq
Reverse (-)
43144322 .. 43148113
3792 bp
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UTR
Exon/CDS
Intron
Rh4BG258500.1

Sequence Viewer

Length: 396 bp
ATGTCAGATTGCAACAGAGGCCAAGACTATTTCTCTGTTCAACAGCATGAGTCACCAACAGCTGCTGACAAGTATGGAGGACTAGCACCAAAGAAGAAGCCTTTGATTTCAAAGGATCATGAACGTGCCTACTTTGATTCAGCAGATTGGGCACTATGCAAGCAAGGTGCTGGGGTGAGTCCAAAATCAACAGCAGCAGTGGAGACCTTACAACCAAAACTACAGAGAACGCCACACCAGCAGCTTCCTCCAAGGAGACCTGCTTGTACTACATCTGGTCATGATAGCCATGTAAGCGTAGTCATGAAATTAAATAAAGCTAGGCTTTTATATATAGAACTAATCTCTCTTTTAATGGTTACTGATTCTTCTTCTCTTTTTTCTTCTGGTTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Endosulfine

Protein Analysis

131

Amino Acids

14.37

Weight (kDa)

9.05

Isoelectric Point (pI)

59.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Endosulfine PF04667 14 - 89 3e-25 cAMP-regulated phosphoprotein/endosulfine conserved region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011376)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G16146
fragaria_vesca FvH4_4g19340 FvH4_4g19340
malus_domestica MD13G1157500.v1.1 MD16G1158400.v1.1
prunus_persica Prupe.1G123200_v2.0.a1
pyrus_communis pycom13g13480 pycom16g13330
rosa_chinensis RchiOBHm_Chr4g0424361
rosa_laevigata RLG00000007480
rosa_multiflora Rmu_sc0005995.1_g000008
rosa_roxburghii Rroxscaffold_5G00366310
rosa_rugosa Rorug04G0196800 Rorug04G0196900 Rorug04G0197000
rosa_samantha Rh4AG253100 Rh4BG258500 Rh4CG269600 Rh4DG252900
rosa_wichuraiana Rw4G021830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 268
AclWI GGATC 1 cut(s) 123
AfaI GTAC 1 cut(s) 268
AgsI TTSAA 2 cut(s) 41, 111
AluBI AGCT 3 cut(s) 62, 244, 320
AluI AGCT 3 cut(s) 62, 244, 320
Alw26I GTCTC 2 cut(s) 197, 250
AlwI GGATC 1 cut(s) 123
AlwNI CAGNNNCTG 1 cut(s) 65
AoxI GGCC 1 cut(s) 19
ApeKI GCWGC 3 cut(s) 62, 194, 241
AsuHPI GGTGA 2 cut(s) 45, 187
BaeGI GKGCMC 1 cut(s) 154
BbvI GCAGC 3 cut(s) 49, 206, 253
BcoDI GTCTC 2 cut(s) 197, 250
BfaI CTAG 2 cut(s) 83, 321
BfmI CTRYAG 1 cut(s) 221
BfuAI ACCTGC 1 cut(s) 268
BisI GCNGC 3 cut(s) 63, 195, 242
BlsI GCNGC 3 cut(s) 64, 196, 243
BsaI GGTCTC 2 cut(s) 197, 250
BsaJI CCNNGG 1 cut(s) 251
BseDI CCNNGG 1 cut(s) 251
BseSI GKGCMC 1 cut(s) 154
BseXI GCAGC 3 cut(s) 49, 206, 253
BseYI CCCAGC 1 cut(s) 170
BshFI GGCC 1 cut(s) 21
BsmAI GTCTC 2 cut(s) 197, 250
BsnI GGCC 1 cut(s) 21
Bso31I GGTCTC 2 cut(s) 197, 250
Bsp1286I GDGCHC 1 cut(s) 154
Bsp143I GATC 1 cut(s) 115
BspANI GGCC 1 cut(s) 21
BspHI TCATGA 3 cut(s) 118, 280, 303
BspMI ACCTGC 1 cut(s) 268
BspPI GGATC 1 cut(s) 123
BspTNI GGTCTC 2 cut(s) 197, 250
BssECI CCNNGG 1 cut(s) 251
BssMI GATC 1 cut(s) 115
BssT1I CCWWGG 1 cut(s) 251
BstC8I GCNNGC 1 cut(s) 161
BstKTI GATC 1 cut(s) 118
BstMAI GTCTC 2 cut(s) 197, 250
BstMBI GATC 1 cut(s) 115
BstMWI GCNNNNNNNGC 4 cut(s) 18, 149, 238, 294
BstSFI CTRYAG 1 cut(s) 221
BstSLI GKGCMC 1 cut(s) 154
BstV1I GCAGC 3 cut(s) 49, 206, 253
BsuRI GGCC 1 cut(s) 21
BtsI GCAGTG 1 cut(s) 204
BtsIMutI CAGTG 1 cut(s) 204
BveI ACCTGC 1 cut(s) 268
Cac8I GCNNGC 1 cut(s) 161
CaiI CAGNNNCTG 1 cut(s) 65
CciI TCATGA 3 cut(s) 118, 280, 303
Csp6I GTAC 1 cut(s) 267
CviAII CATG 5 cut(s) 47, 119, 281, 290, 304
CviJI RGCY 7 cut(s) 21, 62, 100, 244, 288, 320, 325
CviKI_1 RGCY 7 cut(s) 21, 62, 100, 244, 288, 320, 325
CviQI GTAC 1 cut(s) 267
DpnI GATC 1 cut(s) 117
DpnII GATC 1 cut(s) 115
Eco130I CCWWGG 1 cut(s) 251
Eco31I GGTCTC 2 cut(s) 197, 250
EcoT14I CCWWGG 1 cut(s) 251
ErhI CCWWGG 1 cut(s) 251
FaeI CATG 5 cut(s) 50, 122, 284, 293, 307
FalI AAGNNNNNCTT 2 cut(s) 309, 341
FatI CATG 5 cut(s) 46, 118, 280, 289, 303
Fnu4HI GCNGC 3 cut(s) 63, 195, 242
Fsp4HI GCNGC 3 cut(s) 63, 195, 242
FspBI CTAG 2 cut(s) 83, 321
GluI GCNGC 3 cut(s) 63, 195, 242
GsaI CCCAGC 1 cut(s) 174
HaeIII GGCC 1 cut(s) 21
Hin1II CATG 5 cut(s) 50, 122, 284, 293, 307
HinfI GANTC 4 cut(s) 50, 137, 178, 365
HphI GGTGA 2 cut(s) 45, 187
Hpy188I TCNGA 1 cut(s) 7
Hpy188III TCNNGA 3 cut(s) 119, 281, 304
HpyCH4IV ACGT 1 cut(s) 124
HpyCH4V TGCA 2 cut(s) 12, 159
HpyF10VI GCNNNNNNNGC 4 cut(s) 18, 149, 238, 294
HpySE526I ACGT 1 cut(s) 124
Hsp92II CATG 5 cut(s) 50, 122, 284, 293, 307
Kzo9I GATC 1 cut(s) 115
LpnPI CCDG 5 cut(s) 156, 251, 261, 273, 372
Lsp1109I GCAGC 3 cut(s) 49, 206, 253
MaeI CTAG 2 cut(s) 83, 321
MaeII ACGT 1 cut(s) 124
MaeIII GTNAC 2 cut(s) 51, 358
MalI GATC 1 cut(s) 117
MboI GATC 1 cut(s) 115
MboII GAAGA 4 cut(s) 106, 360, 363, 375
MhlI GDGCHC 1 cut(s) 154
MluCI AATT 1 cut(s) 308
MlyI GAGTC 2 cut(s) 59, 187
MnlI CCTC 3 cut(s) 11, 71, 258
MseI TTAA 2 cut(s) 311, 353
MslI CAYNNNNRTG 1 cut(s) 123
MspA1I CMGCKG 1 cut(s) 62
MwoI GCNNNNNNNGC 4 cut(s) 18, 149, 238, 294
NdeII GATC 1 cut(s) 115
NlaIII CATG 5 cut(s) 50, 122, 284, 293, 307
NmuCI GTSAC 1 cut(s) 51
PagI TCATGA 3 cut(s) 118, 280, 303
PfeI GAWTC 2 cut(s) 137, 365
PkrI GCNGC 3 cut(s) 64, 196, 243
PleI GAGTC 2 cut(s) 58, 186
PpsI GAGTC 2 cut(s) 58, 186
PspFI CCCAGC 1 cut(s) 170
PstNI CAGNNNCTG 1 cut(s) 65
PvuII CAGCTG 1 cut(s) 62
RsaI GTAC 1 cut(s) 268
RsaNI GTAC 1 cut(s) 267
RseI CAYNNNNRTG 1 cut(s) 123
SaqAI TTAA 2 cut(s) 311, 353
SatI GCNGC 3 cut(s) 63, 195, 242
Sau3AI GATC 1 cut(s) 115
SchI GAGTC 2 cut(s) 59, 187
SduI GDGCHC 1 cut(s) 154
SetI ASST 7 cut(s) 64, 127, 169, 209, 246, 262, 322
SfcI CTRYAG 1 cut(s) 221
SmiMI CAYNNNNRTG 1 cut(s) 123
Sse9I AATT 1 cut(s) 308
SspMI CTAG 2 cut(s) 83, 321
StyI CCWWGG 1 cut(s) 251
TaiI ACGT 1 cut(s) 127
TasI AATT 1 cut(s) 308
TatI WGTACW 1 cut(s) 266
TfiI GAWTC 2 cut(s) 137, 365
Tru1I TTAA 2 cut(s) 311, 353
Tru9I TTAA 2 cut(s) 311, 353
TscAI CASTG 1 cut(s) 204
TseFI GTSAC 1 cut(s) 51
TseI GCWGC 3 cut(s) 62, 194, 241
Tsp45I GTSAC 1 cut(s) 51
TspDTI ATGAA 2 cut(s) 135, 320
TspRI CASTG 1 cut(s) 204
XspI CTAG 2 cut(s) 83, 321
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.