Rh4DG252900

Belongs to the endosulfine family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0011376
Physical Location & Seq
Reverse (-)
46806628 .. 46809834
3207 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG252900.1

Sequence Viewer

Length: 252 bp
ATGAGGAGAGCTAAGATGTCAGATTGCAACAGAAGCCAAGACTATTTCTCTGTTCAAGAGCATGAGGCACCAACAGCTGCTGACAAGTATGGAGGACTAGCACCAAAGAAGAAGCCTTTGATTTCAAAGGATCATGAACGTGCCTACTTTGATTCAGCGGATTGGGCATTATGCAAGCAAGGTGCTGGGGTGAGTCCAAAATCAACAGCAGCAGTGGAGACCTTACAACCAAAACTACAGGTACAGAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Endosulfine

Protein Analysis

83

Amino Acids

9.2

Weight (kDa)

8.98

Isoelectric Point (pI)

54.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Endosulfine PF04667 19 - 80 6.6e-21 cAMP-regulated phosphoprotein/endosulfine conserved region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0011376)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G16146
fragaria_vesca FvH4_4g19340 FvH4_4g19340
malus_domestica MD13G1157500.v1.1 MD16G1158400.v1.1
prunus_persica Prupe.1G123200_v2.0.a1
pyrus_communis pycom13g13480 pycom16g13330
rosa_chinensis RchiOBHm_Chr4g0424361
rosa_laevigata RLG00000007480
rosa_multiflora Rmu_sc0005995.1_g000008
rosa_roxburghii Rroxscaffold_5G00366310
rosa_rugosa Rorug04G0196800 Rorug04G0196900 Rorug04G0197000
rosa_samantha Rh4AG253100 Rh4BG258500 Rh4CG269600 Rh4DG252900
rosa_wichuraiana Rw4G021830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 67
AciI CCGC 1 cut(s) 158
AclWI GGATC 1 cut(s) 138
AfaI GTAC 1 cut(s) 243
AgsI TTSAA 2 cut(s) 56, 126
AluBI AGCT 2 cut(s) 11, 77
AluI AGCT 2 cut(s) 11, 77
Alw26I GTCTC 1 cut(s) 212
AlwI GGATC 1 cut(s) 138
AlwNI CAGNNNCTG 1 cut(s) 80
ApeKI GCWGC 2 cut(s) 77, 209
AsuHPI GGTGA 1 cut(s) 202
BanI GGYRCC 1 cut(s) 67
BbvI GCAGC 2 cut(s) 64, 221
BcoDI GTCTC 1 cut(s) 212
BfaI CTAG 1 cut(s) 98
BfmI CTRYAG 1 cut(s) 236
BisI GCNGC 2 cut(s) 78, 210
BlsI GCNGC 2 cut(s) 79, 211
BmiI GGNNCC 1 cut(s) 69
BsaI GGTCTC 1 cut(s) 212
BseRI GAGGAG 1 cut(s) 19
BseXI GCAGC 2 cut(s) 64, 221
BseYI CCCAGC 1 cut(s) 185
BshNI GGYRCC 1 cut(s) 67
BsmAI GTCTC 1 cut(s) 212
Bso31I GGTCTC 1 cut(s) 212
Bsp143I GATC 1 cut(s) 130
BspACI CCGC 1 cut(s) 158
BspHI TCATGA 1 cut(s) 133
BspLI GGNNCC 1 cut(s) 69
BspPI GGATC 1 cut(s) 138
BspT107I GGYRCC 1 cut(s) 67
BspTNI GGTCTC 1 cut(s) 212
BssMI GATC 1 cut(s) 130
BstC8I GCNNGC 1 cut(s) 176
BstDEI CTNAG 1 cut(s) 12
BstKTI GATC 1 cut(s) 133
BstMAI GTCTC 1 cut(s) 212
BstMBI GATC 1 cut(s) 130
BstMWI GCNNNNNNNGC 3 cut(s) 33, 74, 164
BstSFI CTRYAG 1 cut(s) 236
BstV1I GCAGC 2 cut(s) 64, 221
BtsI GCAGTG 1 cut(s) 219
BtsIMutI CAGTG 1 cut(s) 219
Cac8I GCNNGC 1 cut(s) 176
CaiI CAGNNNCTG 1 cut(s) 80
CciI TCATGA 1 cut(s) 133
Csp6I GTAC 1 cut(s) 242
CviAII CATG 2 cut(s) 62, 134
CviJI RGCY 4 cut(s) 11, 36, 77, 115
CviKI_1 RGCY 4 cut(s) 11, 36, 77, 115
CviQI GTAC 1 cut(s) 242
DdeI CTNAG 1 cut(s) 12
DpnI GATC 1 cut(s) 132
DpnII GATC 1 cut(s) 130
Eco31I GGTCTC 1 cut(s) 212
FaeI CATG 2 cut(s) 65, 137
FaiI YATR 4 cut(s) 63, 90, 135, 172
FatI CATG 2 cut(s) 61, 133
Fnu4HI GCNGC 2 cut(s) 78, 210
Fsp4HI GCNGC 2 cut(s) 78, 210
FspBI CTAG 1 cut(s) 98
GluI GCNGC 2 cut(s) 78, 210
GsaI CCCAGC 1 cut(s) 189
Hin1II CATG 2 cut(s) 65, 137
HinfI GANTC 2 cut(s) 152, 193
HphI GGTGA 1 cut(s) 202
Hpy188I TCNGA 1 cut(s) 22
Hpy188III TCNNGA 2 cut(s) 56, 134
HpyCH4IV ACGT 1 cut(s) 139
HpyCH4V TGCA 2 cut(s) 27, 174
HpyF10VI GCNNNNNNNGC 3 cut(s) 33, 74, 164
HpyF3I CTNAG 1 cut(s) 12
HpySE526I ACGT 1 cut(s) 139
Hsp92II CATG 2 cut(s) 65, 137
Kzo9I GATC 1 cut(s) 130
LpnPI CCDG 2 cut(s) 171, 224
Lsp1109I GCAGC 2 cut(s) 64, 221
MaeI CTAG 1 cut(s) 98
MaeII ACGT 1 cut(s) 139
MalI GATC 1 cut(s) 132
MboI GATC 1 cut(s) 130
MboII GAAGA 1 cut(s) 121
MluCI AATT 1 cut(s) 247
MlyI GAGTC 1 cut(s) 202
MnlI CCTC 2 cut(s) 58, 86
MslI CAYNNNNRTG 1 cut(s) 138
MspA1I CMGCKG 2 cut(s) 77, 158
MwoI GCNNNNNNNGC 3 cut(s) 33, 74, 164
NdeII GATC 1 cut(s) 130
NlaIII CATG 2 cut(s) 65, 137
NlaIV GGNNCC 1 cut(s) 69
PagI TCATGA 1 cut(s) 133
PfeI GAWTC 1 cut(s) 152
PkrI GCNGC 2 cut(s) 79, 211
PleI GAGTC 1 cut(s) 201
PpsI GAGTC 1 cut(s) 201
PspFI CCCAGC 1 cut(s) 185
PspN4I GGNNCC 1 cut(s) 69
PstNI CAGNNNCTG 1 cut(s) 80
PvuII CAGCTG 1 cut(s) 77
RsaI GTAC 1 cut(s) 243
RsaNI GTAC 1 cut(s) 242
RseI CAYNNNNRTG 1 cut(s) 138
SatI GCNGC 2 cut(s) 78, 210
Sau3AI GATC 1 cut(s) 130
SchI GAGTC 1 cut(s) 202
SetI ASST 6 cut(s) 13, 79, 142, 184, 224, 243
SfcI CTRYAG 1 cut(s) 236
SmiMI CAYNNNNRTG 1 cut(s) 138
Sse9I AATT 1 cut(s) 247
SsiI CCGC 1 cut(s) 158
SspMI CTAG 1 cut(s) 98
TaiI ACGT 1 cut(s) 142
TasI AATT 1 cut(s) 247
TfiI GAWTC 1 cut(s) 152
TscAI CASTG 1 cut(s) 219
TseI GCWGC 2 cut(s) 77, 209
TspDTI ATGAA 1 cut(s) 150
TspRI CASTG 1 cut(s) 219
XspI CTAG 1 cut(s) 98
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.