MD13G1157500.v1.1

Belongs to the endosulfine family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
OG0011376
Physical Location & Seq
Forward (+)
12303050 .. 12306786
3737 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1157500.v1.1.491

Sequence Viewer

Length: 282 bp
ATGGAGGATTGCAACAGAGGCCAAGACTACTTCTCTGCCCAAGACCATGAGTCAGCAGCTACCAACAAATATGGAGGACTTGCGCCAAAGAAGAAGCCTTTGATTTCAAAGGATCATGAACGTGCCTTCTTTGATTCAGCAGATTGGGCACTATGCAAGCAAGGTGCAGGGGTGAATCCAAAATCAACAGCAGCAGTGGAGACCTTACAACCAAAGCTCCAGAGAACTCCACACCAGCAGCTCCCCCCAAGGAGACCTGCTTGTACATCTGGCCATGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Endosulfine

Protein Analysis

94

Amino Acids

10.26

Weight (kDa)

8.51

Isoelectric Point (pI)

54.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Endosulfine PF04667 11 - 88 2.4e-26 cAMP-regulated phosphoprotein/endosulfine conserved region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011376)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G16146
fragaria_vesca FvH4_4g19340 FvH4_4g19340
malus_domestica MD13G1157500.v1.1 MD16G1158400.v1.1
prunus_persica Prupe.1G123200_v2.0.a1
pyrus_communis pycom13g13480 pycom16g13330
rosa_chinensis RchiOBHm_Chr4g0424361
rosa_laevigata RLG00000007480
rosa_multiflora Rmu_sc0005995.1_g000008
rosa_roxburghii Rroxscaffold_5G00366310
rosa_rugosa Rorug04G0196800 Rorug04G0196900 Rorug04G0197000
rosa_samantha Rh4AG253100 Rh4BG258500 Rh4CG269600 Rh4DG252900
rosa_wichuraiana Rw4G021830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 265
AclWI GGATC 1 cut(s) 120
AcoI YGGCCR 1 cut(s) 271
AfaI GTAC 1 cut(s) 265
AgsI TTSAA 1 cut(s) 108
AhdI GACNNNNNGTC 1 cut(s) 49
AluBI AGCT 3 cut(s) 59, 217, 241
AluI AGCT 3 cut(s) 59, 217, 241
Alw26I GTCTC 2 cut(s) 194, 247
AlwI GGATC 1 cut(s) 120
AoxI GGCC 2 cut(s) 19, 271
ApeKI GCWGC 3 cut(s) 56, 191, 238
AspLEI GCGC 1 cut(s) 85
AsuHPI GGTGA 1 cut(s) 184
BaeGI GKGCMC 1 cut(s) 151
BalI TGGCCA 1 cut(s) 273
BbvI GCAGC 3 cut(s) 68, 203, 250
BcoDI GTCTC 2 cut(s) 194, 247
BfuAI ACCTGC 1 cut(s) 265
BisI GCNGC 3 cut(s) 57, 192, 239
BlsI GCNGC 3 cut(s) 58, 193, 240
BmeRI GACNNNNNGTC 1 cut(s) 49
BpmI CTGGAG 1 cut(s) 203
BsaI GGTCTC 2 cut(s) 194, 247
BsaJI CCNNGG 1 cut(s) 248
BsaXI ACNNNNNCTCC 2 cut(s) 201, 231
BseDI CCNNGG 1 cut(s) 248
BseSI GKGCMC 1 cut(s) 151
BseXI GCAGC 3 cut(s) 68, 203, 250
BsgI GTGCAG 1 cut(s) 186
BshFI GGCC 2 cut(s) 21, 273
BsmAI GTCTC 2 cut(s) 194, 247
BsnI GGCC 2 cut(s) 21, 273
Bso31I GGTCTC 2 cut(s) 194, 247
Bsp1286I GDGCHC 1 cut(s) 151
Bsp1407I TGTACA 1 cut(s) 263
Bsp143I GATC 1 cut(s) 112
BspANI GGCC 2 cut(s) 21, 273
BspHI TCATGA 1 cut(s) 115
BspMI ACCTGC 1 cut(s) 265
BspPI GGATC 1 cut(s) 120
BspTNI GGTCTC 2 cut(s) 194, 247
BsrGI TGTACA 1 cut(s) 263
BssECI CCNNGG 1 cut(s) 248
BssMI GATC 1 cut(s) 112
BssT1I CCWWGG 1 cut(s) 248
BstAUI TGTACA 1 cut(s) 263
BstC8I GCNNGC 1 cut(s) 158
BstHHI GCGC 1 cut(s) 85
BstKTI GATC 1 cut(s) 115
BstMAI GTCTC 2 cut(s) 194, 247
BstMBI GATC 1 cut(s) 112
BstMWI GCNNNNNNNGC 2 cut(s) 18, 146
BstSLI GKGCMC 1 cut(s) 151
BstV1I GCAGC 3 cut(s) 68, 203, 250
BsuRI GGCC 2 cut(s) 21, 273
BtsI GCAGTG 1 cut(s) 201
BtsIMutI CAGTG 1 cut(s) 201
BveI ACCTGC 1 cut(s) 265
Cac8I GCNNGC 1 cut(s) 158
CciI TCATGA 1 cut(s) 115
CfoI GCGC 1 cut(s) 85
Csp6I GTAC 1 cut(s) 264
CviAII CATG 3 cut(s) 47, 116, 275
CviJI RGCY 6 cut(s) 21, 59, 97, 217, 241, 273
CviKI_1 RGCY 6 cut(s) 21, 59, 97, 217, 241, 273
CviQI GTAC 1 cut(s) 264
DpnI GATC 1 cut(s) 114
DpnII GATC 1 cut(s) 112
DriI GACNNNNNGTC 1 cut(s) 49
EaeI YGGCCR 1 cut(s) 271
Eam1105I GACNNNNNGTC 1 cut(s) 49
Eco130I CCWWGG 1 cut(s) 248
Eco31I GGTCTC 2 cut(s) 194, 247
EcoT14I CCWWGG 1 cut(s) 248
ErhI CCWWGG 1 cut(s) 248
FaeI CATG 3 cut(s) 50, 119, 278
FaiI YATR 5 cut(s) 48, 72, 117, 154, 276
FatI CATG 3 cut(s) 46, 115, 274
Fnu4HI GCNGC 3 cut(s) 57, 192, 239
Fsp4HI GCNGC 3 cut(s) 57, 192, 239
GlaI GCGC 1 cut(s) 84
GluI GCNGC 3 cut(s) 57, 192, 239
GsuI CTGGAG 1 cut(s) 203
HaeIII GGCC 2 cut(s) 21, 273
HhaI GCGC 1 cut(s) 85
Hin1II CATG 3 cut(s) 50, 119, 278
Hin6I GCGC 1 cut(s) 83
HinP1I GCGC 1 cut(s) 83
HinfI GANTC 3 cut(s) 50, 134, 175
HphI GGTGA 1 cut(s) 184
Hpy188III TCNNGA 2 cut(s) 116, 220
HpyAV CCTTC 1 cut(s) 136
HpyCH4IV ACGT 1 cut(s) 121
HpyCH4V TGCA 3 cut(s) 12, 156, 167
HpyF10VI GCNNNNNNNGC 2 cut(s) 18, 146
HpySE526I ACGT 1 cut(s) 121
Hsp92II CATG 3 cut(s) 50, 119, 278
HspAI GCGC 1 cut(s) 83
Kzo9I GATC 1 cut(s) 112
LmnI GCTCC 2 cut(s) 222, 246
LpnPI CCDG 5 cut(s) 153, 233, 248, 255, 270
Lsp1109I GCAGC 3 cut(s) 68, 203, 250
MaeII ACGT 1 cut(s) 121
MalI GATC 1 cut(s) 114
MboI GATC 1 cut(s) 112
MboII GAAGA 1 cut(s) 103
MhlI GDGCHC 1 cut(s) 151
MlsI TGGCCA 1 cut(s) 273
MluNI TGGCCA 1 cut(s) 273
MlyI GAGTC 1 cut(s) 59
MnlI CCTC 2 cut(s) 11, 68
Mox20I TGGCCA 1 cut(s) 273
MscI TGGCCA 1 cut(s) 273
MslI CAYNNNNRTG 1 cut(s) 120
Msp20I TGGCCA 1 cut(s) 273
MwoI GCNNNNNNNGC 2 cut(s) 18, 146
NdeII GATC 1 cut(s) 112
NlaIII CATG 3 cut(s) 50, 119, 278
PagI TCATGA 1 cut(s) 115
PfeI GAWTC 2 cut(s) 134, 175
PkrI GCNGC 3 cut(s) 58, 193, 240
PleI GAGTC 1 cut(s) 58
PpsI GAGTC 1 cut(s) 58
RsaI GTAC 1 cut(s) 265
RsaNI GTAC 1 cut(s) 264
RseI CAYNNNNRTG 1 cut(s) 120
SatI GCNGC 3 cut(s) 57, 192, 239
Sau3AI GATC 1 cut(s) 112
SchI GAGTC 1 cut(s) 59
SduI GDGCHC 1 cut(s) 151
SetI ASST 7 cut(s) 61, 124, 166, 206, 219, 243, 259
SmiMI CAYNNNNRTG 1 cut(s) 120
StyI CCWWGG 1 cut(s) 248
TaiI ACGT 1 cut(s) 124
TatI WGTACW 1 cut(s) 263
TfiI GAWTC 2 cut(s) 134, 175
TscAI CASTG 1 cut(s) 201
TseI GCWGC 3 cut(s) 56, 191, 238
TspDTI ATGAA 1 cut(s) 132
TspRI CASTG 1 cut(s) 201
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.