Rorug04G0196800

Belongs to the endosulfine family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0011376
Physical Location & Seq
Reverse (-)
34234562 .. 34238546
3985 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0196800.1

Sequence Viewer

Length: 1080 bp
ATGGCCTCCATAGATGCTGTCACAGCAAGCTTTGCTGCTCCTCTTGCTCTCACAGGGGGTGGTAGCGCCCCGGATCTGGGAAAGCTTGGCGGTGGTCCTGTGCGCAGCCTTGCTGTTGCTGTTGATGCTAGTCGATCTTGGGACCTCGCAGACTCAGCAATTAATGCAAAGCCAACAGACCACCAAGTGACCGGCGATTTGGTTGAAGCCTTGAAGATTGAATACACTGCTGAGATTCTGTTGTTTGTGGAAATCATGATATTTAGCATTCGAATTTCTATTTCAGTATTGATGCGTGCTATATTCTCAGCTAAGGTTCTGCCAAGGGCTGAGTCTGTGACAATGGGGTTAGAGGTCCAGTTGGAGCCGGCTTTCGGCCAGCTCTCGGTTGAGCGGGCGGTTATGGGCTCAACTCCGCCGCAACGTCAATTCTTGTTCCACCTTCATGCGCCGGATTCTTTGCACCTCAGAATCCATGTCACTGATTTCCACTCTAATACGTGGGAGGCTGTACGGTCGGTTAGTCAGCTGGATGATATGCAGGACAGCATTGGAATAGGAGGCACTTGGTCAGAGTTCATAGACTATCTTGTCAATTCCATAAAATCTGAGGATACAAAGCTTGTTTTGGAGGGACCGTTAAACTCAGATGGTGCTGCAGCTGCAAAGTTAGTTGCTCAGAAGGCTAAAGGAATGCCTAAAATTTCCATTGCTATGACAAAGCTTGTGGGCTCGGCTGCTACTGAGGCTATTGCAAATCTCTCTCTTCAGCTCTTCAAAGAGTTCAAAAGCATCAACGAGTCTTATGTAGAAGAACGTGAGCGGTCTATGCAATTGTCCAAAGTGGTATCAGCAGAAAAGGAAAGAAACGACAGCATCCAGAGCCAACTTGAGCTGTATACTAAGAGGCAAAAGATACAAAGGATTGGTTCTTCGGACATTAATGGCGCACAAAACTCTCCAGAAAAACAAGCCACTAGAGATACAAAATCAACAAAAGTTGTCAATCGGGTCGTGCCTGCATATCGCAGGGCAAAAGTACGTGGTGCTGTTCTGCAGGATATCGAAGATGAAACTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Endosulfine

Protein Analysis

359

Amino Acids

38.99

Weight (kDa)

5.95

Isoelectric Point (pI)

34.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011376)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G16146
fragaria_vesca FvH4_4g19340 FvH4_4g19340
malus_domestica MD13G1157500.v1.1 MD16G1158400.v1.1
prunus_persica Prupe.1G123200_v2.0.a1
pyrus_communis pycom13g13480 pycom16g13330
rosa_chinensis RchiOBHm_Chr4g0424361
rosa_laevigata RLG00000007480
rosa_multiflora Rmu_sc0005995.1_g000008
rosa_roxburghii Rroxscaffold_5G00366310
rosa_rugosa Rorug04G0196800 Rorug04G0196900 Rorug04G0197000
rosa_samantha Rh4AG253100 Rh4BG258500 Rh4CG269600 Rh4DG252900
rosa_wichuraiana Rw4G021830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 590
Acc16I TGCGCA 1 cut(s) 104
AccBSI CCGCTC 2 cut(s) 394, 823
AccI GTMKAC 1 cut(s) 899
AciI CCGC 6 cut(s) 90, 394, 398, 416, 419, 823
AclWI GGATC 1 cut(s) 81
AcoI YGGCCR 1 cut(s) 376
AcsI RAATTY 2 cut(s) 273, 702
AcuI CTGAAG 1 cut(s) 752
AdeI CACNNNGTG 1 cut(s) 187
AfaI GTAC 2 cut(s) 513, 1041
AfiI CCNNNNNNNGG 4 cut(s) 76, 77, 374, 385
AgsI TTSAA 5 cut(s) 206, 214, 221, 778, 787
AlwI GGATC 1 cut(s) 81
AoxI GGCC 2 cut(s) 3, 376
ApeKI GCWGC 6 cut(s) 35, 105, 656, 659, 662, 737
ApoI RAATTY 2 cut(s) 273, 702
ArsI GACNNNNNNTTYG 2 cut(s) 181, 213
AseI ATTAAT 2 cut(s) 162, 942
AspLEI GCGC 4 cut(s) 68, 105, 451, 950
AspS9I GGNCC 4 cut(s) 95, 142, 355, 635
AsuC2I CCSGG 1 cut(s) 71
AsuII TTCGAA 1 cut(s) 271
AvaII GGWCC 4 cut(s) 95, 142, 355, 635
BanII GRGCYC 2 cut(s) 410, 734
BarI GAAGNNNNNNTAC 2 cut(s) 206, 238
BbvI GCAGC 6 cut(s) 22, 117, 643, 649, 671, 724
BccI CCATC 1 cut(s) 644
BciVI GTATCC 1 cut(s) 607
BcnI CCSGG 1 cut(s) 71
BfaI CTAG 2 cut(s) 129, 978
BfmI CTRYAG 2 cut(s) 657, 1055
BfoI RGCGCY 1 cut(s) 69
BfuI GTATCC 1 cut(s) 607
BisI GCNGC 7 cut(s) 36, 106, 419, 657, 660, 663, 738
BlsI GCNGC 7 cut(s) 37, 107, 420, 658, 661, 664, 739
Bme1390I CCNGG 1 cut(s) 71
Bme18I GGWCC 4 cut(s) 95, 142, 355, 635
BmgT120I GGNCC 4 cut(s) 95, 142, 355, 635
BmiI GGNNCC 3 cut(s) 143, 366, 636
BmrFI CCNGG 1 cut(s) 71
BmsI GCATC 5 cut(s) 4, 115, 282, 801, 885
BpmI CTGGAG 1 cut(s) 945
Bpu10I CCTNAGC 1 cut(s) 312
Bpu14I TTCGAA 1 cut(s) 271
BpuEI CTTGAG 1 cut(s) 911
BpuMI CCSGG 1 cut(s) 71
BsaAI YACGTR 2 cut(s) 501, 1043
BsaJI CCNNGG 2 cut(s) 69, 323
BsaXI ACNNNNNCTCC 2 cut(s) 623, 653
Bsc4I CCNNNNNNNGG 4 cut(s) 76, 77, 374, 385
Bse118I RCCGGY 2 cut(s) 191, 367
Bse1I ACTGG 1 cut(s) 358
Bse3DI GCAATG 1 cut(s) 708
BseDI CCNNGG 2 cut(s) 69, 323
BseGI GGATG 2 cut(s) 538, 876
BseLI CCNNNNNNNGG 4 cut(s) 76, 77, 374, 385
BseMI GCAATG 1 cut(s) 708
BseMII CTCAG 9 cut(s) 168, 222, 321, 321, 481, 600, 660, 692, 735
BseNI ACTGG 1 cut(s) 358
BseRI GAGGAG 1 cut(s) 30
BseXI GCAGC 6 cut(s) 22, 117, 643, 649, 671, 724
Bsh1285I CGRYCG 1 cut(s) 518
BshFI GGCC 2 cut(s) 5, 378
BsiEI CGRYCG 1 cut(s) 518
BsiSI CCGG 4 cut(s) 71, 192, 368, 452
BslFI GGGAC 2 cut(s) 155, 648
BslI CCNNNNNNNGG 4 cut(s) 76, 77, 374, 385
BsmFI GGGAC 2 cut(s) 155, 648
BsmI GAATGC 2 cut(s) 267, 699
BsnI GGCC 2 cut(s) 5, 378
Bsp119I TTCGAA 1 cut(s) 271
Bsp1286I GDGCHC 2 cut(s) 410, 734
Bsp143I GATC 2 cut(s) 73, 134
BspACI CCGC 6 cut(s) 90, 394, 398, 416, 419, 823
BspANI GGCC 2 cut(s) 5, 378
BspCNI CTCAG 9 cut(s) 167, 223, 320, 322, 480, 601, 659, 691, 736
BspHI TCATGA 1 cut(s) 255
BspLI GGNNCC 3 cut(s) 143, 366, 636
BspMAI CTGCAG 2 cut(s) 661, 1059
BspPI GGATC 1 cut(s) 81
BspQI GCTCTTC 1 cut(s) 779
BspT104I TTCGAA 1 cut(s) 271
BsrBI CCGCTC 2 cut(s) 394, 823
BsrDI GCAATG 1 cut(s) 708
BsrFI RCCGGY 2 cut(s) 191, 367
BsrI ACTGG 1 cut(s) 358
BssAI RCCGGY 2 cut(s) 191, 367
BssECI CCNNGG 2 cut(s) 69, 323
BssMI GATC 2 cut(s) 73, 134
BssNAI GTATAC 1 cut(s) 900
BssT1I CCWWGG 1 cut(s) 323
Bst1107I GTATAC 1 cut(s) 900
Bst4CI ACNGT 2 cut(s) 516, 639
Bst6I CTCTTC 2 cut(s) 771, 779
BstAPI GCANNNNNTGC 2 cut(s) 32, 164
BstBAI YACGTR 2 cut(s) 501, 1043
BstBI TTCGAA 1 cut(s) 271
BstC8I GCNNGC 6 cut(s) 28, 297, 369, 380, 396, 1020
BstF5I GGATG 2 cut(s) 538, 876
BstH2I RGCGCY 1 cut(s) 69
BstHHI GCGC 4 cut(s) 68, 105, 451, 950
BstKTI GATC 2 cut(s) 76, 137
BstMBI GATC 2 cut(s) 73, 134
BstMCI CGRYCG 1 cut(s) 518
BstSCI CCNGG 1 cut(s) 69
BstSFI CTRYAG 2 cut(s) 657, 1055
BstV1I GCAGC 6 cut(s) 22, 117, 643, 649, 671, 724
BstX2I RGATCY 1 cut(s) 73
BstYI RGATCY 1 cut(s) 73
BstZ17I GTATAC 1 cut(s) 900
BsuI GTATCC 1 cut(s) 607
BsuRI GGCC 2 cut(s) 5, 378
BtsCI GGATG 2 cut(s) 538, 876
BtsI GCAGTG 1 cut(s) 225
BtsIMutI CAGTG 2 cut(s) 225, 480
Cac8I GCNNGC 6 cut(s) 28, 297, 369, 380, 396, 1020
CciI TCATGA 1 cut(s) 255
CfoI GCGC 4 cut(s) 68, 105, 451, 950
Cfr10I RCCGGY 2 cut(s) 191, 367
Cfr13I GGNCC 4 cut(s) 95, 142, 355, 635
Csp6I GTAC 2 cut(s) 512, 1040
CspCI CAANNNNNGTGG 2 cut(s) 708, 743
CviAII CATG 3 cut(s) 256, 446, 476
CviQI GTAC 2 cut(s) 512, 1040
DpnI GATC 2 cut(s) 75, 136
DpnII GATC 2 cut(s) 73, 134
DraIII CACNNNGTG 1 cut(s) 187
DrdI GACNNNNNNGTC 1 cut(s) 590
DseDI GACNNNNNNGTC 1 cut(s) 590
EaeI YGGCCR 1 cut(s) 376
Eam1104I CTCTTC 2 cut(s) 771, 779
EarI CTCTTC 2 cut(s) 771, 779
EciI GGCGGA 1 cut(s) 405
Eco130I CCWWGG 1 cut(s) 323
Eco24I GRGCYC 2 cut(s) 410, 734
Eco32I GATATC 1 cut(s) 1063
Eco47I GGWCC 4 cut(s) 95, 142, 355, 635
Eco57I CTGAAG 1 cut(s) 752
EcoO109I RGGNCCY 1 cut(s) 142
EcoRV GATATC 1 cut(s) 1063
EcoT14I CCWWGG 1 cut(s) 323
EcoT38I GRGCYC 2 cut(s) 410, 734
ErhI CCWWGG 1 cut(s) 323
FaeI CATG 3 cut(s) 259, 449, 479
FaqI GGGAC 2 cut(s) 155, 648
FatI CATG 3 cut(s) 255, 445, 475
FauI CCCGC 1 cut(s) 387
FblI GTMKAC 1 cut(s) 899
Fnu4HI GCNGC 7 cut(s) 36, 106, 419, 657, 660, 663, 738
FokI GGATG 2 cut(s) 545, 863
FriOI GRGCYC 2 cut(s) 410, 734
Fsp4HI GCNGC 7 cut(s) 36, 106, 419, 657, 660, 663, 738
FspBI CTAG 2 cut(s) 129, 978
FspI TGCGCA 1 cut(s) 104
GlaI GCGC 4 cut(s) 67, 104, 450, 949
GluI GCNGC 7 cut(s) 36, 106, 419, 657, 660, 663, 738
GsuI CTGGAG 1 cut(s) 945
HaeII RGCGCY 1 cut(s) 69
HaeIII GGCC 2 cut(s) 5, 378
HapII CCGG 4 cut(s) 71, 192, 368, 452
HhaI GCGC 4 cut(s) 68, 105, 451, 950
Hin1II CATG 3 cut(s) 259, 449, 479
Hin6I GCGC 4 cut(s) 66, 103, 449, 948
HinP1I GCGC 4 cut(s) 66, 103, 449, 948
HindIII AAGCTT 4 cut(s) 28, 83, 620, 722
HinfI GANTC 6 cut(s) 152, 235, 332, 455, 471, 800
HpaII CCGG 4 cut(s) 71, 192, 368, 452
Hpy166II GTNNAC 1 cut(s) 900
Hpy188I TCNGA 6 cut(s) 470, 574, 610, 649, 681, 937
Hpy188III TCNNGA 3 cut(s) 256, 880, 962
Hpy8I GTNNAC 1 cut(s) 900
HpyAV CCTTC 2 cut(s) 452, 676
HpyCH4III ACNGT 2 cut(s) 516, 639
HpyCH4IV ACGT 4 cut(s) 424, 500, 817, 1042
HpyCH4V TGCA 9 cut(s) 167, 463, 541, 659, 665, 755, 832, 1022, 1057
HpySE526I ACGT 4 cut(s) 424, 500, 817, 1042
Hsp92II CATG 3 cut(s) 259, 449, 479
HspAI GCGC 4 cut(s) 66, 103, 449, 948
KroI GCCGGC 1 cut(s) 367
KroNI GCCGGC 1 cut(s) 369
Kzo9I GATC 2 cut(s) 73, 134
LguI GCTCTTC 1 cut(s) 779
LmnI GCTCC 2 cut(s) 43, 364
Lsp1109I GCAGC 6 cut(s) 22, 117, 643, 649, 671, 724
LweI GCATC 5 cut(s) 4, 115, 282, 801, 885
MaeI CTAG 2 cut(s) 129, 978
MaeII ACGT 4 cut(s) 424, 500, 817, 1042
MaeIII GTNAC 4 cut(s) 19, 187, 337, 478
MalI GATC 2 cut(s) 75, 136
MbiI CCGCTC 2 cut(s) 394, 823
MboI GATC 2 cut(s) 73, 134
MboII GAAGA 6 cut(s) 226, 758, 766, 824, 924, 1079
MfeI CAATTG 1 cut(s) 833
MflI RGATCY 1 cut(s) 73
MhlI GDGCHC 2 cut(s) 410, 734
MluCI AATT 6 cut(s) 159, 273, 428, 595, 702, 833
MlyI GAGTC 3 cut(s) 146, 341, 809
MmeI TCCRAC 1 cut(s) 342
MroNI GCCGGC 1 cut(s) 367
MseI TTAA 3 cut(s) 162, 641, 942
MslI CAYNNNNRTG 2 cut(s) 444, 713
MspA1I CMGCKG 2 cut(s) 529, 662
MspI CCGG 4 cut(s) 71, 192, 368, 452
MspR9I CCNGG 1 cut(s) 71
MunI CAATTG 1 cut(s) 833
Mva1269I GAATGC 2 cut(s) 267, 699
NaeI GCCGGC 1 cut(s) 369
NciI CCSGG 1 cut(s) 71
NdeII GATC 2 cut(s) 73, 134
NgoMIV GCCGGC 1 cut(s) 367
NlaIII CATG 3 cut(s) 259, 449, 479
NlaIV GGNNCC 3 cut(s) 143, 366, 636
NmeAIII GCCGAG 1 cut(s) 713
NmuCI GTSAC 4 cut(s) 19, 187, 337, 478
NsbI TGCGCA 1 cut(s) 104
NspV TTCGAA 1 cut(s) 271
PagI TCATGA 1 cut(s) 255
PciSI GCTCTTC 1 cut(s) 779
PctI GAATGC 2 cut(s) 267, 699
PdiI GCCGGC 1 cut(s) 369
PfeI GAWTC 3 cut(s) 235, 455, 471
PkrI GCNGC 7 cut(s) 37, 107, 420, 658, 661, 664, 739
PleI GAGTC 3 cut(s) 146, 340, 808
PpsI GAGTC 3 cut(s) 146, 340, 808
Ppu21I YACGTR 2 cut(s) 501, 1043
PpuMI RGGWCCY 1 cut(s) 142
PshBI ATTAAT 2 cut(s) 162, 942
Psp5II RGGWCCY 1 cut(s) 142
PspN4I GGNNCC 3 cut(s) 143, 366, 636
PspPI GGNCC 4 cut(s) 95, 142, 355, 635
PspPPI RGGWCCY 1 cut(s) 142
PstI CTGCAG 2 cut(s) 661, 1059
PsuI RGATCY 1 cut(s) 73
PvuII CAGCTG 2 cut(s) 529, 662
RsaI GTAC 2 cut(s) 513, 1041
RsaNI GTAC 2 cut(s) 512, 1040
RseI CAYNNNNRTG 2 cut(s) 444, 713
SapI GCTCTTC 1 cut(s) 779
SaqAI TTAA 3 cut(s) 162, 641, 942
SatI GCNGC 7 cut(s) 36, 106, 419, 657, 660, 663, 738
Sau3AI GATC 2 cut(s) 73, 134
Sau96I GGNCC 4 cut(s) 95, 142, 355, 635
SchI GAGTC 3 cut(s) 146, 341, 809
ScrFI CCNGG 1 cut(s) 71
SduI GDGCHC 2 cut(s) 410, 734
SfaNI GCATC 5 cut(s) 4, 115, 282, 801, 885
SfcI CTRYAG 2 cut(s) 657, 1055
SfuI TTCGAA 1 cut(s) 271
SinI GGWCC 4 cut(s) 95, 142, 355, 635
SmiMI CAYNNNNRTG 2 cut(s) 444, 713
SmlI CTYRAG 1 cut(s) 890
SmoI CTYRAG 1 cut(s) 890
Sse9I AATT 6 cut(s) 159, 273, 428, 595, 702, 833
SsiI CCGC 6 cut(s) 90, 394, 398, 416, 419, 823
SspMI CTAG 2 cut(s) 129, 978
StyD4I CCNGG 1 cut(s) 69
StyI CCWWGG 1 cut(s) 323
TaaI ACNGT 2 cut(s) 516, 639
TaiI ACGT 4 cut(s) 427, 503, 820, 1045
TaqI TCGA 3 cut(s) 133, 271, 1065
TasI AATT 6 cut(s) 159, 273, 428, 595, 702, 833
TauI GCSGC 1 cut(s) 421
TfiI GAWTC 3 cut(s) 235, 455, 471
Tru1I TTAA 3 cut(s) 162, 641, 942
Tru9I TTAA 3 cut(s) 162, 641, 942
TscAI CASTG 2 cut(s) 232, 487
TseFI GTSAC 4 cut(s) 19, 187, 337, 478
TseI GCWGC 6 cut(s) 35, 105, 656, 659, 662, 737
Tsp45I GTSAC 4 cut(s) 19, 187, 337, 478
TspDTI ATGAA 2 cut(s) 434, 568
TspRI CASTG 2 cut(s) 232, 487
VpaK11BI GGWCC 4 cut(s) 95, 142, 355, 635
VspI ATTAAT 2 cut(s) 162, 942
XapI RAATTY 2 cut(s) 273, 702
XmiI GTMKAC 1 cut(s) 899
XspI CTAG 2 cut(s) 129, 978
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.