MD16G1158400.v1.1

Belongs to the endosulfine family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
OG0011376
Physical Location & Seq
Forward (+)
12696249 .. 12699817
3569 bp
Loading structure...
UTR
Exon/CDS
Intron
MD16G1158400.v1.1.491

Sequence Viewer

Length: 279 bp
ATGGAGGATTGCAACAGAGGCCAAGACTATTTCTCTGCCCAAGACCATGAGGCAACATCTGCCAAATATGGAGGACTTGCGCCAAAGAAGAAGCCTTTGATTTCAAAGGATCATGAACGTGCCTTCTTTGATTCAGCAGATTGGGCACTATGCAAGCAAGGTGCAGGGGTGAATCCCAAATCAACAGCAGCAGTGGAGACCTTACGACCAAAACTCCAGAGAACACCACACCAGCAGCTACCCCCAAGACGACCTGCTTGTACATCTGGTCATGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Endosulfine

Protein Analysis

93

Amino Acids

10.18

Weight (kDa)

8.88

Isoelectric Point (pI)

50.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Endosulfine PF04667 14 - 87 3.6e-25 cAMP-regulated phosphoprotein/endosulfine conserved region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011376)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G16146
fragaria_vesca FvH4_4g19340 FvH4_4g19340
malus_domestica MD13G1157500.v1.1 MD16G1158400.v1.1
prunus_persica Prupe.1G123200_v2.0.a1
pyrus_communis pycom13g13480 pycom16g13330
rosa_chinensis RchiOBHm_Chr4g0424361
rosa_laevigata RLG00000007480
rosa_multiflora Rmu_sc0005995.1_g000008
rosa_roxburghii Rroxscaffold_5G00366310
rosa_rugosa Rorug04G0196800 Rorug04G0196900 Rorug04G0197000
rosa_samantha Rh4AG253100 Rh4BG258500 Rh4CG269600 Rh4DG252900
rosa_wichuraiana Rw4G021830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 262
AclWI GGATC 1 cut(s) 117
AfaI GTAC 1 cut(s) 262
AgsI TTSAA 1 cut(s) 105
AluBI AGCT 1 cut(s) 238
AluI AGCT 1 cut(s) 238
Alw26I GTCTC 1 cut(s) 191
AlwI GGATC 1 cut(s) 117
AoxI GGCC 1 cut(s) 19
ApeKI GCWGC 2 cut(s) 188, 235
AspLEI GCGC 1 cut(s) 82
AsuHPI GGTGA 1 cut(s) 181
BaeGI GKGCMC 1 cut(s) 148
BbvI GCAGC 2 cut(s) 200, 247
BcoDI GTCTC 1 cut(s) 191
BfuAI ACCTGC 1 cut(s) 262
BisI GCNGC 2 cut(s) 189, 236
BlsI GCNGC 2 cut(s) 190, 237
BpmI CTGGAG 1 cut(s) 200
BsaI GGTCTC 1 cut(s) 191
BsaXI ACNNNNNCTCC 2 cut(s) 198, 228
BseSI GKGCMC 1 cut(s) 148
BseXI GCAGC 2 cut(s) 200, 247
BsgI GTGCAG 1 cut(s) 183
BshFI GGCC 1 cut(s) 21
BsmAI GTCTC 1 cut(s) 191
BsnI GGCC 1 cut(s) 21
Bso31I GGTCTC 1 cut(s) 191
Bsp1286I GDGCHC 1 cut(s) 148
Bsp1407I TGTACA 1 cut(s) 260
Bsp143I GATC 1 cut(s) 109
BspANI GGCC 1 cut(s) 21
BspHI TCATGA 2 cut(s) 112, 271
BspMI ACCTGC 1 cut(s) 262
BspPI GGATC 1 cut(s) 117
BspTNI GGTCTC 1 cut(s) 191
BsrGI TGTACA 1 cut(s) 260
BssMI GATC 1 cut(s) 109
BstAPI GCANNNNNTGC 1 cut(s) 59
BstAUI TGTACA 1 cut(s) 260
BstC8I GCNNGC 1 cut(s) 155
BstHHI GCGC 1 cut(s) 82
BstKTI GATC 1 cut(s) 112
BstMAI GTCTC 1 cut(s) 191
BstMBI GATC 1 cut(s) 109
BstMWI GCNNNNNNNGC 3 cut(s) 18, 59, 143
BstSLI GKGCMC 1 cut(s) 148
BstV1I GCAGC 2 cut(s) 200, 247
BsuRI GGCC 1 cut(s) 21
BtsI GCAGTG 1 cut(s) 198
BtsIMutI CAGTG 1 cut(s) 198
BveI ACCTGC 1 cut(s) 262
Cac8I GCNNGC 1 cut(s) 155
CciI TCATGA 2 cut(s) 112, 271
CfoI GCGC 1 cut(s) 82
Csp6I GTAC 1 cut(s) 261
CviAII CATG 3 cut(s) 47, 113, 272
CviJI RGCY 3 cut(s) 21, 94, 238
CviKI_1 RGCY 3 cut(s) 21, 94, 238
CviQI GTAC 1 cut(s) 261
DpnI GATC 1 cut(s) 111
DpnII GATC 1 cut(s) 109
Eco31I GGTCTC 1 cut(s) 191
FaeI CATG 3 cut(s) 50, 116, 275
FaiI YATR 5 cut(s) 48, 69, 114, 151, 273
FatI CATG 3 cut(s) 46, 112, 271
Fnu4HI GCNGC 2 cut(s) 189, 236
Fsp4HI GCNGC 2 cut(s) 189, 236
GlaI GCGC 1 cut(s) 81
GluI GCNGC 2 cut(s) 189, 236
GsuI CTGGAG 1 cut(s) 200
HaeIII GGCC 1 cut(s) 21
HhaI GCGC 1 cut(s) 82
Hin1II CATG 3 cut(s) 50, 116, 275
Hin6I GCGC 1 cut(s) 80
HinP1I GCGC 1 cut(s) 80
HinfI GANTC 2 cut(s) 131, 172
HphI GGTGA 1 cut(s) 181
Hpy188III TCNNGA 3 cut(s) 113, 217, 272
HpyAV CCTTC 1 cut(s) 133
HpyCH4IV ACGT 1 cut(s) 118
HpyCH4V TGCA 3 cut(s) 12, 153, 164
HpyF10VI GCNNNNNNNGC 3 cut(s) 18, 59, 143
HpySE526I ACGT 1 cut(s) 118
Hsp92II CATG 3 cut(s) 50, 116, 275
HspAI GCGC 1 cut(s) 80
Kzo9I GATC 1 cut(s) 109
LpnPI CCDG 5 cut(s) 150, 230, 245, 252, 267
Lsp1109I GCAGC 2 cut(s) 200, 247
MaeII ACGT 1 cut(s) 118
MalI GATC 1 cut(s) 111
MboI GATC 1 cut(s) 109
MboII GAAGA 1 cut(s) 100
MhlI GDGCHC 1 cut(s) 148
MnlI CCTC 3 cut(s) 11, 43, 65
MslI CAYNNNNRTG 1 cut(s) 117
MwoI GCNNNNNNNGC 3 cut(s) 18, 59, 143
NdeII GATC 1 cut(s) 109
NlaIII CATG 3 cut(s) 50, 116, 275
PagI TCATGA 2 cut(s) 112, 271
PfeI GAWTC 2 cut(s) 131, 172
PkrI GCNGC 2 cut(s) 190, 237
RsaI GTAC 1 cut(s) 262
RsaNI GTAC 1 cut(s) 261
RseI CAYNNNNRTG 1 cut(s) 117
SatI GCNGC 2 cut(s) 189, 236
Sau3AI GATC 1 cut(s) 109
SduI GDGCHC 1 cut(s) 148
SetI ASST 5 cut(s) 121, 163, 203, 240, 256
SmiMI CAYNNNNRTG 1 cut(s) 117
TaiI ACGT 1 cut(s) 121
TatI WGTACW 1 cut(s) 260
TfiI GAWTC 2 cut(s) 131, 172
TscAI CASTG 1 cut(s) 198
TseI GCWGC 2 cut(s) 188, 235
TspDTI ATGAA 1 cut(s) 129
TspRI CASTG 1 cut(s) 198
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.