RchiOBHm_Chr4g0424361

Belongs to the endosulfine family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0011376
Physical Location & Seq
Reverse (-)
49937627 .. 49940821
3195 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ39363

Sequence Viewer

Length: 300 bp
ATGTCAGATTGCAACAGAAGCCAAGACTATTTCTCTGTTCAAGAGCATGAGGCACCAACAGCTGCTGACAAGTATGGAGGACTAGCACCAAAGAAGAAGCCTTTGATTTCAAAGGATCATGAACGTGCCTACTTTGATTCAGCGGATTGGGCACTATGCAAGCAAGGTGCTGGGGTGAGTCCAAAATCAACAGCAGCAGTGGAGACCTTACAACCAAAACTACAGAGAACGCCACACCAGCAGCTTCCTCCAAGGAGACCTGCTTGTACTACATCTGGTCATGATAGCCATGGAGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Endosulfine

Protein Analysis

99

Amino Acids

10.8

Weight (kDa)

8.49

Isoelectric Point (pI)

62.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Endosulfine PF04667 14 - 89 1.8e-25 cAMP-regulated phosphoprotein/endosulfine conserved region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011376)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G16146
fragaria_vesca FvH4_4g19340 FvH4_4g19340
malus_domestica MD13G1157500.v1.1 MD16G1158400.v1.1
prunus_persica Prupe.1G123200_v2.0.a1
pyrus_communis pycom13g13480 pycom16g13330
rosa_chinensis RchiOBHm_Chr4g0424361
rosa_laevigata RLG00000007480
rosa_multiflora Rmu_sc0005995.1_g000008
rosa_roxburghii Rroxscaffold_5G00366310
rosa_rugosa Rorug04G0196800 Rorug04G0196900 Rorug04G0197000
rosa_samantha Rh4AG253100 Rh4BG258500 Rh4CG269600 Rh4DG252900
rosa_wichuraiana Rw4G021830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 268
AccB1I GGYRCC 1 cut(s) 52
AciI CCGC 1 cut(s) 143
AclWI GGATC 1 cut(s) 123
AfaI GTAC 1 cut(s) 268
AgsI TTSAA 2 cut(s) 41, 111
AluBI AGCT 2 cut(s) 62, 244
AluI AGCT 2 cut(s) 62, 244
Alw26I GTCTC 2 cut(s) 197, 250
AlwI GGATC 1 cut(s) 123
AlwNI CAGNNNCTG 1 cut(s) 65
ApeKI GCWGC 3 cut(s) 62, 194, 241
AsuHPI GGTGA 1 cut(s) 187
BaeGI GKGCMC 1 cut(s) 154
BanI GGYRCC 1 cut(s) 52
BbvI GCAGC 3 cut(s) 49, 206, 253
BcoDI GTCTC 2 cut(s) 197, 250
BfaI CTAG 1 cut(s) 83
BfmI CTRYAG 1 cut(s) 221
BfuAI ACCTGC 1 cut(s) 268
BisI GCNGC 3 cut(s) 63, 195, 242
BlsI GCNGC 3 cut(s) 64, 196, 243
BmiI GGNNCC 1 cut(s) 54
BsaI GGTCTC 2 cut(s) 197, 250
BsaJI CCNNGG 2 cut(s) 251, 289
BseDI CCNNGG 2 cut(s) 251, 289
BseSI GKGCMC 1 cut(s) 154
BseXI GCAGC 3 cut(s) 49, 206, 253
BseYI CCCAGC 1 cut(s) 170
BshNI GGYRCC 1 cut(s) 52
BsmAI GTCTC 2 cut(s) 197, 250
Bso31I GGTCTC 2 cut(s) 197, 250
Bsp1286I GDGCHC 1 cut(s) 154
Bsp143I GATC 1 cut(s) 115
Bsp19I CCATGG 1 cut(s) 289
BspACI CCGC 1 cut(s) 143
BspHI TCATGA 2 cut(s) 118, 280
BspLI GGNNCC 1 cut(s) 54
BspMI ACCTGC 1 cut(s) 268
BspPI GGATC 1 cut(s) 123
BspT107I GGYRCC 1 cut(s) 52
BspTNI GGTCTC 2 cut(s) 197, 250
BssECI CCNNGG 2 cut(s) 251, 289
BssMI GATC 1 cut(s) 115
BssT1I CCWWGG 2 cut(s) 251, 289
BstC8I GCNNGC 1 cut(s) 161
BstDSI CCRYGG 1 cut(s) 289
BstKTI GATC 1 cut(s) 118
BstMAI GTCTC 2 cut(s) 197, 250
BstMBI GATC 1 cut(s) 115
BstMWI GCNNNNNNNGC 4 cut(s) 18, 59, 149, 238
BstSFI CTRYAG 1 cut(s) 221
BstSLI GKGCMC 1 cut(s) 154
BstV1I GCAGC 3 cut(s) 49, 206, 253
BtgI CCRYGG 1 cut(s) 289
BtsI GCAGTG 1 cut(s) 204
BtsIMutI CAGTG 1 cut(s) 204
BveI ACCTGC 1 cut(s) 268
Cac8I GCNNGC 1 cut(s) 161
CaiI CAGNNNCTG 1 cut(s) 65
CciI TCATGA 2 cut(s) 118, 280
Csp6I GTAC 1 cut(s) 267
CviAII CATG 4 cut(s) 47, 119, 281, 290
CviJI RGCY 5 cut(s) 21, 62, 100, 244, 288
CviKI_1 RGCY 5 cut(s) 21, 62, 100, 244, 288
CviQI GTAC 1 cut(s) 267
DpnI GATC 1 cut(s) 117
DpnII GATC 1 cut(s) 115
Eco130I CCWWGG 2 cut(s) 251, 289
Eco31I GGTCTC 2 cut(s) 197, 250
EcoT14I CCWWGG 2 cut(s) 251, 289
ErhI CCWWGG 2 cut(s) 251, 289
FaeI CATG 4 cut(s) 50, 122, 284, 293
FaiI YATR 7 cut(s) 48, 75, 120, 157, 282, 291, 298
FatI CATG 4 cut(s) 46, 118, 280, 289
Fnu4HI GCNGC 3 cut(s) 63, 195, 242
Fsp4HI GCNGC 3 cut(s) 63, 195, 242
FspBI CTAG 1 cut(s) 83
GluI GCNGC 3 cut(s) 63, 195, 242
GsaI CCCAGC 1 cut(s) 174
Hin1II CATG 4 cut(s) 50, 122, 284, 293
HinfI GANTC 2 cut(s) 137, 178
HphI GGTGA 1 cut(s) 187
Hpy188I TCNGA 1 cut(s) 7
Hpy188III TCNNGA 3 cut(s) 41, 119, 281
HpyCH4IV ACGT 1 cut(s) 124
HpyCH4V TGCA 2 cut(s) 12, 159
HpyF10VI GCNNNNNNNGC 4 cut(s) 18, 59, 149, 238
HpySE526I ACGT 1 cut(s) 124
Hsp92II CATG 4 cut(s) 50, 122, 284, 293
Kzo9I GATC 1 cut(s) 115
LmnI GCTCC 1 cut(s) 293
LpnPI CCDG 4 cut(s) 156, 251, 261, 273
Lsp1109I GCAGC 3 cut(s) 49, 206, 253
MaeI CTAG 1 cut(s) 83
MaeII ACGT 1 cut(s) 124
MalI GATC 1 cut(s) 117
MboI GATC 1 cut(s) 115
MboII GAAGA 1 cut(s) 106
MhlI GDGCHC 1 cut(s) 154
MlyI GAGTC 1 cut(s) 187
MnlI CCTC 3 cut(s) 43, 71, 258
MslI CAYNNNNRTG 1 cut(s) 123
MspA1I CMGCKG 2 cut(s) 62, 143
MwoI GCNNNNNNNGC 4 cut(s) 18, 59, 149, 238
NcoI CCATGG 1 cut(s) 289
NdeII GATC 1 cut(s) 115
NlaIII CATG 4 cut(s) 50, 122, 284, 293
NlaIV GGNNCC 1 cut(s) 54
PagI TCATGA 2 cut(s) 118, 280
PfeI GAWTC 1 cut(s) 137
PkrI GCNGC 3 cut(s) 64, 196, 243
PleI GAGTC 1 cut(s) 186
PpsI GAGTC 1 cut(s) 186
PspFI CCCAGC 1 cut(s) 170
PspN4I GGNNCC 1 cut(s) 54
PstNI CAGNNNCTG 1 cut(s) 65
PvuII CAGCTG 1 cut(s) 62
RsaI GTAC 1 cut(s) 268
RsaNI GTAC 1 cut(s) 267
RseI CAYNNNNRTG 1 cut(s) 123
SatI GCNGC 3 cut(s) 63, 195, 242
Sau3AI GATC 1 cut(s) 115
SchI GAGTC 1 cut(s) 187
SduI GDGCHC 1 cut(s) 154
SetI ASST 6 cut(s) 64, 127, 169, 209, 246, 262
SfcI CTRYAG 1 cut(s) 221
SmiMI CAYNNNNRTG 1 cut(s) 123
SsiI CCGC 1 cut(s) 143
SspMI CTAG 1 cut(s) 83
StyI CCWWGG 2 cut(s) 251, 289
TaiI ACGT 1 cut(s) 127
TatI WGTACW 1 cut(s) 266
TfiI GAWTC 1 cut(s) 137
TscAI CASTG 1 cut(s) 204
TseI GCWGC 3 cut(s) 62, 194, 241
TspDTI ATGAA 1 cut(s) 135
TspRI CASTG 1 cut(s) 204
XspI CTAG 1 cut(s) 83
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.