Rw4G021830

Belongs to the endosulfine family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0011376
Physical Location & Seq
Reverse (-)
46578738 .. 46582329
3592 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G021830.1

Sequence Viewer

Length: 315 bp
ATGAGGAGAGCTAAGATGTCAGATTGCAACAGAAGCCAAGACTATTTCTCTGTTCAAGAGCATGAGGCACCAACAGCTGCTGACAAGTATGGAGGACTAGCACCAAAGAAGAAGCCTTTGATTTCAAAGGATCATGAACGTGCCTACTTTGATTCAGCGGATTGGGCACTATGCAAGCAAGGTGCTGGGGTGAGTCCAAAATCAACAGCAGCAGTGGAGACCTTACAACCAAAACTACAGAGAACGCCACACCAGCAGCTTCCTCCAAGGAGACCTGCTTGTACTACATCTGGTCATGATAGCCATGGGGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Endosulfine

Protein Analysis

104

Amino Acids

11.45

Weight (kDa)

9.3

Isoelectric Point (pI)

68.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Endosulfine PF04667 19 - 94 2.1e-25 cAMP-regulated phosphoprotein/endosulfine conserved region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011376)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G16146
fragaria_vesca FvH4_4g19340 FvH4_4g19340
malus_domestica MD13G1157500.v1.1 MD16G1158400.v1.1
prunus_persica Prupe.1G123200_v2.0.a1
pyrus_communis pycom13g13480 pycom16g13330
rosa_chinensis RchiOBHm_Chr4g0424361
rosa_laevigata RLG00000007480
rosa_multiflora Rmu_sc0005995.1_g000008
rosa_roxburghii Rroxscaffold_5G00366310
rosa_rugosa Rorug04G0196800 Rorug04G0196900 Rorug04G0197000
rosa_samantha Rh4AG253100 Rh4BG258500 Rh4CG269600 Rh4DG252900
rosa_wichuraiana Rw4G021830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 283
AccB1I GGYRCC 1 cut(s) 67
AciI CCGC 1 cut(s) 158
AclWI GGATC 1 cut(s) 138
AfaI GTAC 1 cut(s) 283
AgsI TTSAA 2 cut(s) 56, 126
AluBI AGCT 3 cut(s) 11, 77, 259
AluI AGCT 3 cut(s) 11, 77, 259
Alw26I GTCTC 2 cut(s) 212, 265
AlwI GGATC 1 cut(s) 138
AlwNI CAGNNNCTG 1 cut(s) 80
ApeKI GCWGC 3 cut(s) 77, 209, 256
AsuHPI GGTGA 1 cut(s) 202
BaeGI GKGCMC 1 cut(s) 169
BanI GGYRCC 1 cut(s) 67
BbvI GCAGC 3 cut(s) 64, 221, 268
BcoDI GTCTC 2 cut(s) 212, 265
BfaI CTAG 1 cut(s) 98
BfmI CTRYAG 1 cut(s) 236
BfuAI ACCTGC 1 cut(s) 283
BisI GCNGC 3 cut(s) 78, 210, 257
BlsI GCNGC 3 cut(s) 79, 211, 258
BmiI GGNNCC 1 cut(s) 69
BsaI GGTCTC 2 cut(s) 212, 265
BsaJI CCNNGG 2 cut(s) 266, 304
BseDI CCNNGG 2 cut(s) 266, 304
BseRI GAGGAG 1 cut(s) 19
BseSI GKGCMC 1 cut(s) 169
BseXI GCAGC 3 cut(s) 64, 221, 268
BseYI CCCAGC 1 cut(s) 185
BshNI GGYRCC 1 cut(s) 67
BsmAI GTCTC 2 cut(s) 212, 265
Bso31I GGTCTC 2 cut(s) 212, 265
Bsp1286I GDGCHC 1 cut(s) 169
Bsp143I GATC 1 cut(s) 130
Bsp19I CCATGG 1 cut(s) 304
BspACI CCGC 1 cut(s) 158
BspHI TCATGA 2 cut(s) 133, 295
BspLI GGNNCC 1 cut(s) 69
BspMI ACCTGC 1 cut(s) 283
BspPI GGATC 1 cut(s) 138
BspT107I GGYRCC 1 cut(s) 67
BspTNI GGTCTC 2 cut(s) 212, 265
BssECI CCNNGG 2 cut(s) 266, 304
BssMI GATC 1 cut(s) 130
BssT1I CCWWGG 2 cut(s) 266, 304
BstC8I GCNNGC 1 cut(s) 176
BstDEI CTNAG 1 cut(s) 12
BstDSI CCRYGG 1 cut(s) 304
BstKTI GATC 1 cut(s) 133
BstMAI GTCTC 2 cut(s) 212, 265
BstMBI GATC 1 cut(s) 130
BstMWI GCNNNNNNNGC 4 cut(s) 33, 74, 164, 253
BstSFI CTRYAG 1 cut(s) 236
BstSLI GKGCMC 1 cut(s) 169
BstV1I GCAGC 3 cut(s) 64, 221, 268
BtgI CCRYGG 1 cut(s) 304
BtsI GCAGTG 1 cut(s) 219
BtsIMutI CAGTG 1 cut(s) 219
BveI ACCTGC 1 cut(s) 283
Cac8I GCNNGC 1 cut(s) 176
CaiI CAGNNNCTG 1 cut(s) 80
CciI TCATGA 2 cut(s) 133, 295
Csp6I GTAC 1 cut(s) 282
CviAII CATG 4 cut(s) 62, 134, 296, 305
CviJI RGCY 6 cut(s) 11, 36, 77, 115, 259, 303
CviKI_1 RGCY 6 cut(s) 11, 36, 77, 115, 259, 303
CviQI GTAC 1 cut(s) 282
DdeI CTNAG 1 cut(s) 12
DpnI GATC 1 cut(s) 132
DpnII GATC 1 cut(s) 130
Eco130I CCWWGG 2 cut(s) 266, 304
Eco31I GGTCTC 2 cut(s) 212, 265
EcoT14I CCWWGG 2 cut(s) 266, 304
ErhI CCWWGG 2 cut(s) 266, 304
FaeI CATG 4 cut(s) 65, 137, 299, 308
FaiI YATR 7 cut(s) 63, 90, 135, 172, 297, 306, 313
FatI CATG 4 cut(s) 61, 133, 295, 304
Fnu4HI GCNGC 3 cut(s) 78, 210, 257
Fsp4HI GCNGC 3 cut(s) 78, 210, 257
FspBI CTAG 1 cut(s) 98
GluI GCNGC 3 cut(s) 78, 210, 257
GsaI CCCAGC 1 cut(s) 189
Hin1II CATG 4 cut(s) 65, 137, 299, 308
HinfI GANTC 2 cut(s) 152, 193
HphI GGTGA 1 cut(s) 202
Hpy188I TCNGA 1 cut(s) 22
Hpy188III TCNNGA 3 cut(s) 56, 134, 296
HpyCH4IV ACGT 1 cut(s) 139
HpyCH4V TGCA 2 cut(s) 27, 174
HpyF10VI GCNNNNNNNGC 4 cut(s) 33, 74, 164, 253
HpyF3I CTNAG 1 cut(s) 12
HpySE526I ACGT 1 cut(s) 139
Hsp92II CATG 4 cut(s) 65, 137, 299, 308
Kzo9I GATC 1 cut(s) 130
LpnPI CCDG 4 cut(s) 171, 266, 276, 288
Lsp1109I GCAGC 3 cut(s) 64, 221, 268
MaeI CTAG 1 cut(s) 98
MaeII ACGT 1 cut(s) 139
MalI GATC 1 cut(s) 132
MboI GATC 1 cut(s) 130
MboII GAAGA 1 cut(s) 121
MhlI GDGCHC 1 cut(s) 169
MlyI GAGTC 1 cut(s) 202
MnlI CCTC 3 cut(s) 58, 86, 273
MslI CAYNNNNRTG 1 cut(s) 138
MspA1I CMGCKG 2 cut(s) 77, 158
MwoI GCNNNNNNNGC 4 cut(s) 33, 74, 164, 253
NcoI CCATGG 1 cut(s) 304
NdeII GATC 1 cut(s) 130
NlaIII CATG 4 cut(s) 65, 137, 299, 308
NlaIV GGNNCC 1 cut(s) 69
PagI TCATGA 2 cut(s) 133, 295
PfeI GAWTC 1 cut(s) 152
PkrI GCNGC 3 cut(s) 79, 211, 258
PleI GAGTC 1 cut(s) 201
PpsI GAGTC 1 cut(s) 201
PspFI CCCAGC 1 cut(s) 185
PspN4I GGNNCC 1 cut(s) 69
PstNI CAGNNNCTG 1 cut(s) 80
PvuII CAGCTG 1 cut(s) 77
RsaI GTAC 1 cut(s) 283
RsaNI GTAC 1 cut(s) 282
RseI CAYNNNNRTG 1 cut(s) 138
SatI GCNGC 3 cut(s) 78, 210, 257
Sau3AI GATC 1 cut(s) 130
SchI GAGTC 1 cut(s) 202
SduI GDGCHC 1 cut(s) 169
SetI ASST 7 cut(s) 13, 79, 142, 184, 224, 261, 277
SfcI CTRYAG 1 cut(s) 236
SmiMI CAYNNNNRTG 1 cut(s) 138
SsiI CCGC 1 cut(s) 158
SspMI CTAG 1 cut(s) 98
StyI CCWWGG 2 cut(s) 266, 304
TaiI ACGT 1 cut(s) 142
TatI WGTACW 1 cut(s) 281
TfiI GAWTC 1 cut(s) 152
TscAI CASTG 1 cut(s) 219
TseI GCWGC 3 cut(s) 77, 209, 256
TspDTI ATGAA 1 cut(s) 150
TspRI CASTG 1 cut(s) 219
XspI CTAG 1 cut(s) 98
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.