Prupe.1G123200_v2.0.a1

Belongs to the endosulfine family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0011376
Physical Location & Seq
Forward (+)
9657091 .. 9660011
2921 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G123200.1

Sequence Viewer

Length: 288 bp
ATGGCGGATTGCAACAGAGGAGAAGACTATTTCTCTGCCCAAGACCATGAGGCGTCAACAGTTGTCCAGAAATATGGAGGACTTGCGCCAAAGAAGAAGCCTTTAATTTCGAAGGATCATGAACGTGCCTTCTTTGATTCAGCAGATTGGGCACTATGCAAGCAAGGTGCAGGGGTGAATCCAAAATCAACAGCAGCCGTGGAGACCTTACGGCCAAAACTGCAGAGAACGCCACACCAGCAGCTCCCTCCAAGGAGACCTGCCTGTACATCTGATCATGATATATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Endosulfine

Protein Analysis

96

Amino Acids

10.53

Weight (kDa)

8.51

Isoelectric Point (pI)

46.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011376)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G16146
fragaria_vesca FvH4_4g19340 FvH4_4g19340
malus_domestica MD13G1157500.v1.1 MD16G1158400.v1.1
prunus_persica Prupe.1G123200_v2.0.a1
pyrus_communis pycom13g13480 pycom16g13330
rosa_chinensis RchiOBHm_Chr4g0424361
rosa_laevigata RLG00000007480
rosa_multiflora Rmu_sc0005995.1_g000008
rosa_roxburghii Rroxscaffold_5G00366310
rosa_rugosa Rorug04G0196800 Rorug04G0196900 Rorug04G0197000
rosa_samantha Rh4AG253100 Rh4BG258500 Rh4CG269600 Rh4DG252900
rosa_wichuraiana Rw4G021830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 268
AciI CCGC 1 cut(s) 5
AclWI GGATC 1 cut(s) 123
AcoI YGGCCR 1 cut(s) 212
AcyI GRCGYC 1 cut(s) 53
AfaI GTAC 1 cut(s) 268
AluBI AGCT 1 cut(s) 244
AluI AGCT 1 cut(s) 244
Alw26I GTCTC 2 cut(s) 197, 250
AlwI GGATC 1 cut(s) 123
AoxI GGCC 1 cut(s) 212
ApeKI GCWGC 2 cut(s) 194, 241
AspLEI GCGC 1 cut(s) 88
AsuHPI GGTGA 1 cut(s) 187
AsuII TTCGAA 1 cut(s) 110
BaeGI GKGCMC 1 cut(s) 154
BbsI GAAGAC 1 cut(s) 30
BbvI GCAGC 2 cut(s) 206, 253
BceAI ACGGC 2 cut(s) 182, 227
BclI TGATCA 1 cut(s) 274
BcoDI GTCTC 2 cut(s) 197, 250
BfmI CTRYAG 1 cut(s) 221
BfuAI ACCTGC 1 cut(s) 268
BisI GCNGC 2 cut(s) 195, 242
BlsI GCNGC 2 cut(s) 196, 243
BpiI GAAGAC 1 cut(s) 30
Bpu14I TTCGAA 1 cut(s) 110
BsaHI GRCGYC 1 cut(s) 53
BsaI GGTCTC 2 cut(s) 197, 250
BsaJI CCNNGG 2 cut(s) 198, 251
BseDI CCNNGG 2 cut(s) 198, 251
BseRI GAGGAG 1 cut(s) 33
BseSI GKGCMC 1 cut(s) 154
BseXI GCAGC 2 cut(s) 206, 253
BsgI GTGCAG 1 cut(s) 189
BshFI GGCC 1 cut(s) 214
BsmAI GTCTC 2 cut(s) 197, 250
BsnI GGCC 1 cut(s) 214
Bso31I GGTCTC 2 cut(s) 197, 250
Bsp119I TTCGAA 1 cut(s) 110
Bsp1286I GDGCHC 1 cut(s) 154
Bsp1407I TGTACA 1 cut(s) 266
Bsp143I GATC 2 cut(s) 115, 274
BspACI CCGC 1 cut(s) 5
BspANI GGCC 1 cut(s) 214
BspHI TCATGA 2 cut(s) 118, 277
BspMAI CTGCAG 1 cut(s) 225
BspMI ACCTGC 1 cut(s) 268
BspPI GGATC 1 cut(s) 123
BspT104I TTCGAA 1 cut(s) 110
BspTNI GGTCTC 2 cut(s) 197, 250
BsrGI TGTACA 1 cut(s) 266
BssECI CCNNGG 2 cut(s) 198, 251
BssMI GATC 2 cut(s) 115, 274
BssNI GRCGYC 1 cut(s) 53
BssT1I CCWWGG 1 cut(s) 251
Bst4CI ACNGT 1 cut(s) 61
BstACI GRCGYC 1 cut(s) 53
BstAUI TGTACA 1 cut(s) 266
BstBI TTCGAA 1 cut(s) 110
BstC8I GCNNGC 1 cut(s) 161
BstDSI CCRYGG 1 cut(s) 198
BstHHI GCGC 1 cut(s) 88
BstKTI GATC 2 cut(s) 118, 277
BstMAI GTCTC 2 cut(s) 197, 250
BstMBI GATC 2 cut(s) 115, 274
BstMWI GCNNNNNNNGC 4 cut(s) 149, 220, 229, 238
BstSFI CTRYAG 1 cut(s) 221
BstSLI GKGCMC 1 cut(s) 154
BstV1I GCAGC 2 cut(s) 206, 253
BstV2I GAAGAC 1 cut(s) 30
BstXI CCANNNNNNTGG 1 cut(s) 74
BsuRI GGCC 1 cut(s) 214
BtgI CCRYGG 1 cut(s) 198
BveI ACCTGC 1 cut(s) 268
Cac8I GCNNGC 1 cut(s) 161
CciI TCATGA 2 cut(s) 118, 277
CfoI GCGC 1 cut(s) 88
CseI GACGC 1 cut(s) 42
Csp6I GTAC 1 cut(s) 267
CviAII CATG 3 cut(s) 47, 119, 278
CviJI RGCY 4 cut(s) 100, 197, 214, 244
CviKI_1 RGCY 4 cut(s) 100, 197, 214, 244
CviQI GTAC 1 cut(s) 267
DpnI GATC 2 cut(s) 117, 276
DpnII GATC 2 cut(s) 115, 274
EaeI YGGCCR 1 cut(s) 212
EciI GGCGGA 1 cut(s) 20
Eco130I CCWWGG 1 cut(s) 251
Eco31I GGTCTC 2 cut(s) 197, 250
EcoT14I CCWWGG 1 cut(s) 251
ErhI CCWWGG 1 cut(s) 251
FaeI CATG 3 cut(s) 50, 122, 281
FaiI YATR 7 cut(s) 48, 75, 120, 157, 279, 284, 286
FatI CATG 3 cut(s) 46, 118, 277
FbaI TGATCA 1 cut(s) 274
Fnu4HI GCNGC 2 cut(s) 195, 242
Fsp4HI GCNGC 2 cut(s) 195, 242
GlaI GCGC 1 cut(s) 87
GluI GCNGC 2 cut(s) 195, 242
HaeIII GGCC 1 cut(s) 214
HgaI GACGC 1 cut(s) 42
HhaI GCGC 1 cut(s) 88
Hin1I GRCGYC 1 cut(s) 53
Hin1II CATG 3 cut(s) 50, 122, 281
Hin6I GCGC 1 cut(s) 86
HinP1I GCGC 1 cut(s) 86
HincII GTYRAC 1 cut(s) 57
HindII GTYRAC 1 cut(s) 57
HinfI GANTC 2 cut(s) 137, 178
HphI GGTGA 1 cut(s) 187
Hpy166II GTNNAC 1 cut(s) 57
Hpy188I TCNGA 1 cut(s) 274
Hpy188III TCNNGA 3 cut(s) 67, 119, 278
Hpy8I GTNNAC 1 cut(s) 57
HpyAV CCTTC 2 cut(s) 106, 139
HpyCH4III ACNGT 1 cut(s) 61
HpyCH4IV ACGT 1 cut(s) 124
HpyCH4V TGCA 4 cut(s) 12, 159, 170, 223
HpyF10VI GCNNNNNNNGC 4 cut(s) 149, 220, 229, 238
HpySE526I ACGT 1 cut(s) 124
Hsp92I GRCGYC 1 cut(s) 53
Hsp92II CATG 3 cut(s) 50, 122, 281
HspAI GCGC 1 cut(s) 86
Ksp22I TGATCA 1 cut(s) 274
Kzo9I GATC 2 cut(s) 115, 274
LmnI GCTCC 1 cut(s) 249
LpnPI CCDG 5 cut(s) 80, 156, 251, 273, 277
Lsp1109I GCAGC 2 cut(s) 206, 253
MaeII ACGT 1 cut(s) 124
MalI GATC 2 cut(s) 117, 276
MboI GATC 2 cut(s) 115, 274
MboII GAAGA 2 cut(s) 35, 106
MhlI GDGCHC 1 cut(s) 154
MluCI AATT 1 cut(s) 105
MnlI CCTC 4 cut(s) 11, 43, 71, 258
MseI TTAA 1 cut(s) 104
MslI CAYNNNNRTG 1 cut(s) 123
MwoI GCNNNNNNNGC 4 cut(s) 149, 220, 229, 238
NdeII GATC 2 cut(s) 115, 274
NlaIII CATG 3 cut(s) 50, 122, 281
NspV TTCGAA 1 cut(s) 110
PagI TCATGA 2 cut(s) 118, 277
PfeI GAWTC 2 cut(s) 137, 178
PkrI GCNGC 2 cut(s) 196, 243
PstI CTGCAG 1 cut(s) 225
RsaI GTAC 1 cut(s) 268
RsaNI GTAC 1 cut(s) 267
RseI CAYNNNNRTG 1 cut(s) 123
SaqAI TTAA 1 cut(s) 104
SatI GCNGC 2 cut(s) 195, 242
Sau3AI GATC 2 cut(s) 115, 274
SduI GDGCHC 1 cut(s) 154
SetI ASST 5 cut(s) 127, 169, 209, 246, 262
SfcI CTRYAG 1 cut(s) 221
SfuI TTCGAA 1 cut(s) 110
SmiMI CAYNNNNRTG 1 cut(s) 123
Sse9I AATT 1 cut(s) 105
SsiI CCGC 1 cut(s) 5
StyI CCWWGG 1 cut(s) 251
TaaI ACNGT 1 cut(s) 61
TaiI ACGT 1 cut(s) 127
TaqI TCGA 1 cut(s) 110
TasI AATT 1 cut(s) 105
TatI WGTACW 1 cut(s) 266
TfiI GAWTC 2 cut(s) 137, 178
Tru1I TTAA 1 cut(s) 104
Tru9I TTAA 1 cut(s) 104
TseI GCWGC 2 cut(s) 194, 241
TspDTI ATGAA 1 cut(s) 135
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.