Rorug04G0196900

Belongs to the endosulfine family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0011376
Physical Location & Seq
Forward (+)
34284761 .. 34286165
1405 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0196900.1

Sequence Viewer

Length: 702 bp
ATGGATAGGAGTTGGATTCAGTTACGCACTAGGGGAAAGCAAGAATATATCAATGGGGTGAAACAATTCATGAATTTTGCAATTGCCCACAAGAAGCCAGGGTCTGAACTAATTCCTTGTCCATGCATGGATTGCAATAATTTTCGTAAATATATCCCAGACCAAGTTGAGGATCATTTATATGCAAATGGAATGGCTATGTATTACACTAATTGGACAGATCATGGAGAAGAAGACAATGATTTTGAACCAGAAGATGATATAATGGAATTTGAAAATGAAGAGGATGTTGATGATGTAGTTGAGATGTTAAATGAGTTCCAAGCTCATGATGATAGTGATTCTCAAGAACATGTCCATATCATGGAAGAAAGAAAGTTTAGACGATTGATGAGCGATGCTGAGCAAGAGTTGTATCCAGGTTGTCAAAAATTCTCTAAATTATCCTTCATTGTGAAGTTGCTTCATTTGAAGATAATGTTTCGTGGTAGCAACAAGTTCTTTACAGCGTTGCTTGAGTTAGTCAAGGAGGCATTACCTGATGGAAACACATGTCCCAAATCTTATTACGAATCAAAAAAGGTTATTCATGACTTGGGTCTTAGTTATGACAAGATTCATGCATGTAAAAACGATTGTGTACTCTTTTGGAAGAAGTATGAAGATAAATTGGAGTGTCCAGTATGTAATGAGCCTAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Endosulfine

Protein Analysis

233

Amino Acids

27.55

Weight (kDa)

4.97

Isoelectric Point (pI)

38.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transpos_assoc PF13963 3 - 77 5.5e-21 Transposase-associated domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011376)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G16146
fragaria_vesca FvH4_4g19340 FvH4_4g19340
malus_domestica MD13G1157500.v1.1 MD16G1158400.v1.1
prunus_persica Prupe.1G123200_v2.0.a1
pyrus_communis pycom13g13480 pycom16g13330
rosa_chinensis RchiOBHm_Chr4g0424361
rosa_laevigata RLG00000007480
rosa_multiflora Rmu_sc0005995.1_g000008
rosa_roxburghii Rroxscaffold_5G00366310
rosa_rugosa Rorug04G0196800 Rorug04G0196900 Rorug04G0197000
rosa_samantha Rh4AG253100 Rh4BG258500 Rh4CG269600 Rh4DG252900
rosa_wichuraiana Rw4G021830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 364
AclWI GGATC 1 cut(s) 180
AcsI RAATTY 3 cut(s) 73, 269, 431
AfaI GTAC 1 cut(s) 642
AfiI CCNNNNNNNGG 2 cut(s) 169, 364
AflIII ACRYGT 2 cut(s) 352, 551
AgsI TTSAA 3 cut(s) 248, 275, 472
AjnI CCWGG 2 cut(s) 97, 418
AluBI AGCT 1 cut(s) 326
AluI AGCT 1 cut(s) 326
AlwI GGATC 1 cut(s) 180
AlwNI CAGNNNCTG 1 cut(s) 104
ApoI RAATTY 3 cut(s) 73, 269, 431
ArsI GACNNNNNNTTYG 2 cut(s) 227, 259
Asp700I GAANNNNTTC 2 cut(s) 65, 111
AspA2I CCTAGG 1 cut(s) 695
AsuHPI GGTGA 1 cut(s) 70
AvrII CCTAGG 1 cut(s) 695
BbsI GAAGAC 1 cut(s) 240
BccI CCATC 1 cut(s) 536
BciT130I CCWGG 2 cut(s) 99, 420
BciVI GTATCC 1 cut(s) 426
BfaI CTAG 2 cut(s) 30, 696
BfuI GTATCC 1 cut(s) 426
BlnI CCTAGG 1 cut(s) 695
BlpI GCTNAGC 1 cut(s) 402
Bme1390I CCNGG 2 cut(s) 99, 420
BmrFI CCNGG 2 cut(s) 99, 420
BmsI GCATC 1 cut(s) 388
BoxI GACNNNNGTC 1 cut(s) 597
BpiI GAAGAC 1 cut(s) 240
Bpu1102I GCTNAGC 1 cut(s) 402
BpuEI CTTGAG 2 cut(s) 330, 536
BsaJI CCNNGG 2 cut(s) 98, 695
Bsc4I CCNNNNNNNGG 2 cut(s) 169, 364
Bse1I ACTGG 1 cut(s) 680
BseBI CCWGG 2 cut(s) 99, 420
BseDI CCNNGG 2 cut(s) 98, 695
BseGI GGATG 1 cut(s) 292
BseLI CCNNNNNNNGG 2 cut(s) 169, 364
BseMII CTCAG 1 cut(s) 393
BseNI ACTGG 1 cut(s) 680
BslFI GGGAC 1 cut(s) 540
BslI CCNNNNNNNGG 2 cut(s) 169, 364
BsmFI GGGAC 1 cut(s) 540
Bsp143I GATC 2 cut(s) 172, 220
Bsp1720I GCTNAGC 1 cut(s) 402
BspCNI CTCAG 1 cut(s) 394
BspHI TCATGA 3 cut(s) 69, 328, 589
BspPI GGATC 1 cut(s) 180
BsrI ACTGG 1 cut(s) 680
BssECI CCNNGG 2 cut(s) 98, 695
BssMI GATC 2 cut(s) 172, 220
BssT1I CCWWGG 1 cut(s) 695
Bst2UI CCWGG 2 cut(s) 99, 420
Bst6I CTCTTC 1 cut(s) 276
BstAPI GCANNNNNTGC 1 cut(s) 132
BstDEI CTNAG 2 cut(s) 402, 602
BstF5I GGATG 1 cut(s) 292
BstKTI GATC 2 cut(s) 175, 223
BstMBI GATC 2 cut(s) 172, 220
BstMWI GCNNNNNNNGC 1 cut(s) 132
BstNI CCWGG 2 cut(s) 99, 420
BstNSI RCATGY 3 cut(s) 356, 555, 627
BstPAI GACNNNNGTC 1 cut(s) 597
BstSCI CCNGG 2 cut(s) 97, 418
BstV2I GAAGAC 1 cut(s) 240
BsuI GTATCC 1 cut(s) 426
BtgZI GCGATG 1 cut(s) 411
BtsCI GGATG 1 cut(s) 292
CaiI CAGNNNCTG 1 cut(s) 104
CciI TCATGA 3 cut(s) 69, 328, 589
Csp6I GTAC 1 cut(s) 641
CviJI RGCY 4 cut(s) 97, 197, 326, 694
CviKI_1 RGCY 4 cut(s) 97, 197, 326, 694
CviQI GTAC 1 cut(s) 641
DdeI CTNAG 2 cut(s) 402, 602
DpnI GATC 2 cut(s) 174, 222
DpnII GATC 2 cut(s) 172, 220
Eam1104I CTCTTC 1 cut(s) 276
EarI CTCTTC 1 cut(s) 276
Eco130I CCWWGG 1 cut(s) 695
EcoRII CCWGG 2 cut(s) 97, 418
EcoT14I CCWWGG 1 cut(s) 695
EcoT22I ATGCAT 2 cut(s) 128, 625
ErhI CCWWGG 1 cut(s) 695
FaqI GGGAC 1 cut(s) 540
FokI GGATG 1 cut(s) 299
FspBI CTAG 2 cut(s) 30, 696
HinfI GANTC 4 cut(s) 16, 341, 572, 616
HphI GGTGA 1 cut(s) 70
Hpy166II GTNNAC 1 cut(s) 641
Hpy188I TCNGA 1 cut(s) 106
Hpy188III TCNNGA 4 cut(s) 70, 329, 347, 590
Hpy8I GTNNAC 1 cut(s) 641
HpyAV CCTTC 1 cut(s) 457
HpyCH4V TGCA 5 cut(s) 80, 126, 135, 185, 623
HpyF10VI GCNNNNNNNGC 1 cut(s) 132
HpyF3I CTNAG 2 cut(s) 402, 602
Kzo9I GATC 2 cut(s) 172, 220
LpnPI CCDG 8 cut(s) 84, 111, 171, 264, 405, 432, 552, 693
LweI GCATC 1 cut(s) 388
MaeI CTAG 2 cut(s) 30, 696
MaeIII GTNAC 1 cut(s) 21
MalI GATC 2 cut(s) 174, 222
MboI GATC 2 cut(s) 172, 220
MboII GAAGA 8 cut(s) 242, 245, 266, 293, 380, 484, 664, 674
MfeI CAATTG 1 cut(s) 81
MnlI CCTC 3 cut(s) 163, 277, 523
Mph1103I ATGCAT 2 cut(s) 128, 625
MroXI GAANNNNTTC 2 cut(s) 65, 111
MseI TTAA 1 cut(s) 311
MslI CAYNNNNRTG 1 cut(s) 180
MspR9I CCNGG 2 cut(s) 99, 420
MunI CAATTG 1 cut(s) 81
MvaI CCWGG 2 cut(s) 99, 420
MwoI GCNNNNNNNGC 1 cut(s) 132
NdeII GATC 2 cut(s) 172, 220
NsiI ATGCAT 2 cut(s) 128, 625
NspI RCATGY 3 cut(s) 356, 555, 627
PagI TCATGA 3 cut(s) 69, 328, 589
PciI ACATGT 2 cut(s) 352, 551
PdmI GAANNNNTTC 2 cut(s) 65, 111
PfeI GAWTC 4 cut(s) 16, 341, 572, 616
PflMI CCANNNNNTGG 1 cut(s) 364
PscI ACATGT 2 cut(s) 352, 551
PshAI GACNNNNGTC 1 cut(s) 597
Psp6I CCWGG 2 cut(s) 97, 418
PspGI CCWGG 2 cut(s) 97, 418
PstNI CAGNNNCTG 1 cut(s) 104
RsaI GTAC 1 cut(s) 642
RsaNI GTAC 1 cut(s) 641
RseI CAYNNNNRTG 1 cut(s) 180
SaqAI TTAA 1 cut(s) 311
Sau3AI GATC 2 cut(s) 172, 220
ScrFI CCNGG 2 cut(s) 99, 420
SetI ASST 5 cut(s) 328, 424, 541, 585, 701
SfaNI GCATC 1 cut(s) 388
SmiMI CAYNNNNRTG 1 cut(s) 180
SmlI CTYRAG 2 cut(s) 345, 515
SmoI CTYRAG 2 cut(s) 345, 515
SspMI CTAG 2 cut(s) 30, 696
StyD4I CCNGG 2 cut(s) 97, 418
StyI CCWWGG 1 cut(s) 695
TatI WGTACW 1 cut(s) 640
TfiI GAWTC 4 cut(s) 16, 341, 572, 616
Tru1I TTAA 1 cut(s) 311
Tru9I TTAA 1 cut(s) 311
TspDTI ATGAA 8 cut(s) 58, 86, 294, 439, 455, 578, 608, 675
Van91I CCANNNNNTGG 1 cut(s) 364
XapI RAATTY 3 cut(s) 73, 269, 431
XceI RCATGY 3 cut(s) 356, 555, 627
XmaJI CCTAGG 1 cut(s) 695
XmnI GAANNNNTTC 2 cut(s) 65, 111
XspI CTAG 2 cut(s) 30, 696
Zsp2I ATGCAT 2 cut(s) 128, 625
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.