FvH4_4g19340

Belongs to the endosulfine family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0011376
Physical Location & Seq
Reverse (-)
23014607 .. 23018263
3657 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g19340.t2

Sequence Viewer

Length: 282 bp
ATGTCAGATTGCAACAGAGGCCAAGACTATTTCTCTGTTCAACAGCATGAGGCACCGACGGCTGCTGACAAGTATGGAGGACTAGCACCAAAAAAGAAGCCTCTGATTACAAAGGATCATGAACGTGCCTACTTTGATTCAGCAGATTGGGCGCTATGCAAGCAAGGTGCTGGGGTGAATCCAAAATCAACAGCATCAGTGGAGACCTTACGACCAAAACTACAGAGAACTCCGCACCAGCAGCTCCCTCCCAGGAGACCTGCTTGTACTACATCTGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Endosulfine

Protein Analysis

94

Amino Acids

10.32

Weight (kDa)

9.12

Isoelectric Point (pI)

54.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Endosulfine PF04667 14 - 89 9.2e-26 cAMP-regulated phosphoprotein/endosulfine conserved region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011376)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G16146
fragaria_vesca FvH4_4g19340 FvH4_4g19340
malus_domestica MD13G1157500.v1.1 MD16G1158400.v1.1
prunus_persica Prupe.1G123200_v2.0.a1
pyrus_communis pycom13g13480 pycom16g13330
rosa_chinensis RchiOBHm_Chr4g0424361
rosa_laevigata RLG00000007480
rosa_multiflora Rmu_sc0005995.1_g000008
rosa_roxburghii Rroxscaffold_5G00366310
rosa_rugosa Rorug04G0196800 Rorug04G0196900 Rorug04G0197000
rosa_samantha Rh4AG253100 Rh4BG258500 Rh4CG269600 Rh4DG252900
rosa_wichuraiana Rw4G021830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 268
AccB1I GGYRCC 1 cut(s) 52
AciI CCGC 1 cut(s) 233
AclWI GGATC 1 cut(s) 123
AfaI GTAC 1 cut(s) 268
AgsI TTSAA 1 cut(s) 41
AjnI CCWGG 1 cut(s) 251
AluBI AGCT 1 cut(s) 244
AluI AGCT 1 cut(s) 244
Alw26I GTCTC 2 cut(s) 197, 250
AlwI GGATC 1 cut(s) 123
AoxI GGCC 1 cut(s) 19
ApeKI GCWGC 2 cut(s) 62, 241
AspLEI GCGC 1 cut(s) 154
AsuHPI GGTGA 1 cut(s) 187
BanI GGYRCC 1 cut(s) 52
BbvI GCAGC 2 cut(s) 49, 253
BceAI ACGGC 1 cut(s) 75
BciT130I CCWGG 1 cut(s) 253
BcoDI GTCTC 2 cut(s) 197, 250
BfaI CTAG 1 cut(s) 83
BfmI CTRYAG 1 cut(s) 221
BfoI RGCGCY 1 cut(s) 155
BfuAI ACCTGC 1 cut(s) 268
BisI GCNGC 2 cut(s) 63, 242
BlsI GCNGC 2 cut(s) 64, 243
Bme1390I CCNGG 1 cut(s) 253
BmiI GGNNCC 1 cut(s) 54
BmrFI CCNGG 1 cut(s) 253
BmsI GCATC 1 cut(s) 203
BsaI GGTCTC 2 cut(s) 197, 250
BsaJI CCNNGG 1 cut(s) 251
BseBI CCWGG 1 cut(s) 253
BseDI CCNNGG 1 cut(s) 251
BseMII CTCAG 1 cut(s) 267
BseXI GCAGC 2 cut(s) 49, 253
BseYI CCCAGC 1 cut(s) 170
BshFI GGCC 1 cut(s) 21
BshNI GGYRCC 1 cut(s) 52
BsmAI GTCTC 2 cut(s) 197, 250
BsnI GGCC 1 cut(s) 21
Bso31I GGTCTC 2 cut(s) 197, 250
Bsp143I GATC 1 cut(s) 115
BspACI CCGC 1 cut(s) 233
BspANI GGCC 1 cut(s) 21
BspCNI CTCAG 1 cut(s) 268
BspHI TCATGA 1 cut(s) 118
BspLI GGNNCC 1 cut(s) 54
BspMI ACCTGC 1 cut(s) 268
BspPI GGATC 1 cut(s) 123
BspT107I GGYRCC 1 cut(s) 52
BspTNI GGTCTC 2 cut(s) 197, 250
BssECI CCNNGG 1 cut(s) 251
BssMI GATC 1 cut(s) 115
Bst2UI CCWGG 1 cut(s) 253
BstC8I GCNNGC 1 cut(s) 161
BstDEI CTNAG 1 cut(s) 276
BstH2I RGCGCY 1 cut(s) 155
BstHHI GCGC 1 cut(s) 154
BstKTI GATC 1 cut(s) 118
BstMAI GTCTC 2 cut(s) 197, 250
BstMBI GATC 1 cut(s) 115
BstMWI GCNNNNNNNGC 5 cut(s) 18, 59, 149, 160, 241
BstNI CCWGG 1 cut(s) 253
BstSCI CCNGG 1 cut(s) 251
BstSFI CTRYAG 1 cut(s) 221
BstV1I GCAGC 2 cut(s) 49, 253
BsuRI GGCC 1 cut(s) 21
BtsIMutI CAGTG 1 cut(s) 204
BveI ACCTGC 1 cut(s) 268
Cac8I GCNNGC 1 cut(s) 161
CciI TCATGA 1 cut(s) 118
CfoI GCGC 1 cut(s) 154
Csp6I GTAC 1 cut(s) 267
CviAII CATG 2 cut(s) 47, 119
CviJI RGCY 4 cut(s) 21, 62, 100, 244
CviKI_1 RGCY 4 cut(s) 21, 62, 100, 244
CviQI GTAC 1 cut(s) 267
DdeI CTNAG 1 cut(s) 276
DpnI GATC 1 cut(s) 117
DpnII GATC 1 cut(s) 115
Eco31I GGTCTC 2 cut(s) 197, 250
EcoRII CCWGG 1 cut(s) 251
FaeI CATG 2 cut(s) 50, 122
FaiI YATR 4 cut(s) 48, 75, 120, 157
FatI CATG 2 cut(s) 46, 118
Fnu4HI GCNGC 2 cut(s) 63, 242
Fsp4HI GCNGC 2 cut(s) 63, 242
FspBI CTAG 1 cut(s) 83
GlaI GCGC 1 cut(s) 153
GluI GCNGC 2 cut(s) 63, 242
GsaI CCCAGC 1 cut(s) 174
HaeII RGCGCY 1 cut(s) 155
HaeIII GGCC 1 cut(s) 21
HhaI GCGC 1 cut(s) 154
Hin1II CATG 2 cut(s) 50, 122
Hin6I GCGC 1 cut(s) 152
HinP1I GCGC 1 cut(s) 152
HinfI GANTC 2 cut(s) 137, 178
HphI GGTGA 1 cut(s) 187
Hpy188I TCNGA 3 cut(s) 7, 105, 277
Hpy188III TCNNGA 1 cut(s) 119
Hpy99I CGWCG 1 cut(s) 61
HpyCH4IV ACGT 1 cut(s) 124
HpyCH4V TGCA 2 cut(s) 12, 159
HpyF10VI GCNNNNNNNGC 5 cut(s) 18, 59, 149, 160, 241
HpyF3I CTNAG 1 cut(s) 276
HpySE526I ACGT 1 cut(s) 124
Hsp92II CATG 2 cut(s) 50, 122
HspAI GCGC 1 cut(s) 152
Kzo9I GATC 1 cut(s) 115
LmnI GCTCC 1 cut(s) 249
LpnPI CCDG 5 cut(s) 156, 238, 251, 265, 273
Lsp1109I GCAGC 2 cut(s) 49, 253
LweI GCATC 1 cut(s) 203
MaeI CTAG 1 cut(s) 83
MaeII ACGT 1 cut(s) 124
MalI GATC 1 cut(s) 117
MboI GATC 1 cut(s) 115
MnlI CCTC 5 cut(s) 11, 43, 71, 111, 258
MslI CAYNNNNRTG 2 cut(s) 123, 277
MspR9I CCNGG 1 cut(s) 253
MvaI CCWGG 1 cut(s) 253
MwoI GCNNNNNNNGC 5 cut(s) 18, 59, 149, 160, 241
NdeII GATC 1 cut(s) 115
NlaIII CATG 2 cut(s) 50, 122
NlaIV GGNNCC 1 cut(s) 54
PagI TCATGA 1 cut(s) 118
PfeI GAWTC 2 cut(s) 137, 178
PkrI GCNGC 2 cut(s) 64, 243
Psp6I CCWGG 1 cut(s) 251
PspFI CCCAGC 1 cut(s) 170
PspGI CCWGG 1 cut(s) 251
PspN4I GGNNCC 1 cut(s) 54
RsaI GTAC 1 cut(s) 268
RsaNI GTAC 1 cut(s) 267
RseI CAYNNNNRTG 2 cut(s) 123, 277
SatI GCNGC 2 cut(s) 63, 242
Sau3AI GATC 1 cut(s) 115
ScrFI CCNGG 1 cut(s) 253
SetI ASST 5 cut(s) 127, 169, 209, 246, 262
SfaNI GCATC 1 cut(s) 203
SfcI CTRYAG 1 cut(s) 221
SmiMI CAYNNNNRTG 2 cut(s) 123, 277
SsiI CCGC 1 cut(s) 233
SspMI CTAG 1 cut(s) 83
StyD4I CCNGG 1 cut(s) 251
TaiI ACGT 1 cut(s) 127
TatI WGTACW 1 cut(s) 266
TfiI GAWTC 2 cut(s) 137, 178
TscAI CASTG 1 cut(s) 204
TseI GCWGC 2 cut(s) 62, 241
TspDTI ATGAA 1 cut(s) 135
TspRI CASTG 1 cut(s) 204
XspI CTAG 1 cut(s) 83
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.