Rroxscaffold_5G00366310

Belongs to the endosulfine family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0011376
Physical Location & Seq
Reverse (-)
48141250 .. 48144418
3169 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00366310.1

Sequence Viewer

Length: 300 bp
ATGTCAGATTGCAACAGAGGCCAAGACTATTTCTCTGTTCAAGAGCATGAGGCACCAACAGCTGCTGACAAGTATGGAGGACTAGCACCAAAGAAGAAGCCTTTGATTTCAAAGGACCATGAACGTGCCTACTTTGATTCAGCAGATTGGGCACTATGCAAGCAAGGCGCTGGGGTGAGTCCAAAATCAACAGCAGCAGTGGAGACCTTACAACCAAAACTACAGAGAACGCCACACCAGCAGCTTCCTCCAAGGAGACCTGCTTGTACTACATCTGGTCATAATAGCCATGGGGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Endosulfine

Protein Analysis

99

Amino Acids

10.77

Weight (kDa)

8.86

Isoelectric Point (pI)

55.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Endosulfine PF04667 14 - 89 2e-25 cAMP-regulated phosphoprotein/endosulfine conserved region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011376)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G16146
fragaria_vesca FvH4_4g19340 FvH4_4g19340
malus_domestica MD13G1157500.v1.1 MD16G1158400.v1.1
prunus_persica Prupe.1G123200_v2.0.a1
pyrus_communis pycom13g13480 pycom16g13330
rosa_chinensis RchiOBHm_Chr4g0424361
rosa_laevigata RLG00000007480
rosa_multiflora Rmu_sc0005995.1_g000008
rosa_roxburghii Rroxscaffold_5G00366310
rosa_rugosa Rorug04G0196800 Rorug04G0196900 Rorug04G0197000
rosa_samantha Rh4AG253100 Rh4BG258500 Rh4CG269600 Rh4DG252900
rosa_wichuraiana Rw4G021830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 268
AccB1I GGYRCC 1 cut(s) 52
AfaI GTAC 1 cut(s) 268
AgsI TTSAA 2 cut(s) 41, 111
AluBI AGCT 2 cut(s) 62, 244
AluI AGCT 2 cut(s) 62, 244
Alw26I GTCTC 2 cut(s) 197, 250
AlwNI CAGNNNCTG 1 cut(s) 65
AoxI GGCC 1 cut(s) 19
ApeKI GCWGC 3 cut(s) 62, 194, 241
AspLEI GCGC 1 cut(s) 170
AspS9I GGNCC 1 cut(s) 115
AsuHPI GGTGA 1 cut(s) 187
AvaII GGWCC 1 cut(s) 115
BaeGI GKGCMC 1 cut(s) 154
BanI GGYRCC 1 cut(s) 52
BbvI GCAGC 3 cut(s) 49, 206, 253
BcoDI GTCTC 2 cut(s) 197, 250
BfaI CTAG 1 cut(s) 83
BfmI CTRYAG 1 cut(s) 221
BfoI RGCGCY 1 cut(s) 171
BfuAI ACCTGC 1 cut(s) 268
BisI GCNGC 3 cut(s) 63, 195, 242
BlsI GCNGC 3 cut(s) 64, 196, 243
Bme18I GGWCC 1 cut(s) 115
BmgT120I GGNCC 1 cut(s) 115
BmiI GGNNCC 1 cut(s) 54
BsaI GGTCTC 2 cut(s) 197, 250
BsaJI CCNNGG 2 cut(s) 251, 289
BseDI CCNNGG 2 cut(s) 251, 289
BseSI GKGCMC 1 cut(s) 154
BseXI GCAGC 3 cut(s) 49, 206, 253
BseYI CCCAGC 1 cut(s) 170
BshFI GGCC 1 cut(s) 21
BshNI GGYRCC 1 cut(s) 52
BsmAI GTCTC 2 cut(s) 197, 250
BsnI GGCC 1 cut(s) 21
Bso31I GGTCTC 2 cut(s) 197, 250
Bsp1286I GDGCHC 1 cut(s) 154
Bsp19I CCATGG 1 cut(s) 289
BspANI GGCC 1 cut(s) 21
BspLI GGNNCC 1 cut(s) 54
BspMI ACCTGC 1 cut(s) 268
BspT107I GGYRCC 1 cut(s) 52
BspTNI GGTCTC 2 cut(s) 197, 250
BssECI CCNNGG 2 cut(s) 251, 289
BssT1I CCWWGG 2 cut(s) 251, 289
BstC8I GCNNGC 1 cut(s) 161
BstDSI CCRYGG 1 cut(s) 289
BstH2I RGCGCY 1 cut(s) 171
BstHHI GCGC 1 cut(s) 170
BstMAI GTCTC 2 cut(s) 197, 250
BstMWI GCNNNNNNNGC 5 cut(s) 18, 59, 149, 165, 238
BstSFI CTRYAG 1 cut(s) 221
BstSLI GKGCMC 1 cut(s) 154
BstV1I GCAGC 3 cut(s) 49, 206, 253
BsuRI GGCC 1 cut(s) 21
BtgI CCRYGG 1 cut(s) 289
BtsI GCAGTG 1 cut(s) 204
BtsIMutI CAGTG 1 cut(s) 204
BveI ACCTGC 1 cut(s) 268
Cac8I GCNNGC 1 cut(s) 161
CaiI CAGNNNCTG 1 cut(s) 65
CfoI GCGC 1 cut(s) 170
Cfr13I GGNCC 1 cut(s) 115
Csp6I GTAC 1 cut(s) 267
CviAII CATG 3 cut(s) 47, 119, 290
CviJI RGCY 5 cut(s) 21, 62, 100, 244, 288
CviKI_1 RGCY 5 cut(s) 21, 62, 100, 244, 288
CviQI GTAC 1 cut(s) 267
Eco130I CCWWGG 2 cut(s) 251, 289
Eco31I GGTCTC 2 cut(s) 197, 250
Eco47I GGWCC 1 cut(s) 115
EcoT14I CCWWGG 2 cut(s) 251, 289
ErhI CCWWGG 2 cut(s) 251, 289
FaeI CATG 3 cut(s) 50, 122, 293
FaiI YATR 7 cut(s) 48, 75, 120, 157, 282, 291, 298
FatI CATG 3 cut(s) 46, 118, 289
Fnu4HI GCNGC 3 cut(s) 63, 195, 242
Fsp4HI GCNGC 3 cut(s) 63, 195, 242
FspBI CTAG 1 cut(s) 83
GlaI GCGC 1 cut(s) 169
GluI GCNGC 3 cut(s) 63, 195, 242
GsaI CCCAGC 1 cut(s) 174
HaeII RGCGCY 1 cut(s) 171
HaeIII GGCC 1 cut(s) 21
HhaI GCGC 1 cut(s) 170
Hin1II CATG 3 cut(s) 50, 122, 293
Hin6I GCGC 1 cut(s) 168
HinP1I GCGC 1 cut(s) 168
HinfI GANTC 2 cut(s) 137, 178
HphI GGTGA 1 cut(s) 187
Hpy188I TCNGA 1 cut(s) 7
Hpy188III TCNNGA 1 cut(s) 41
HpyCH4IV ACGT 1 cut(s) 124
HpyCH4V TGCA 2 cut(s) 12, 159
HpyF10VI GCNNNNNNNGC 5 cut(s) 18, 59, 149, 165, 238
HpySE526I ACGT 1 cut(s) 124
Hsp92II CATG 3 cut(s) 50, 122, 293
HspAI GCGC 1 cut(s) 168
LpnPI CCDG 4 cut(s) 156, 251, 261, 273
Lsp1109I GCAGC 3 cut(s) 49, 206, 253
MaeI CTAG 1 cut(s) 83
MaeII ACGT 1 cut(s) 124
MboII GAAGA 1 cut(s) 106
MhlI GDGCHC 1 cut(s) 154
MlyI GAGTC 1 cut(s) 187
MnlI CCTC 4 cut(s) 11, 43, 71, 258
MslI CAYNNNNRTG 1 cut(s) 123
MspA1I CMGCKG 1 cut(s) 62
MwoI GCNNNNNNNGC 5 cut(s) 18, 59, 149, 165, 238
NcoI CCATGG 1 cut(s) 289
NlaIII CATG 3 cut(s) 50, 122, 293
NlaIV GGNNCC 1 cut(s) 54
PfeI GAWTC 1 cut(s) 137
PkrI GCNGC 3 cut(s) 64, 196, 243
PleI GAGTC 1 cut(s) 186
PpsI GAGTC 1 cut(s) 186
PspFI CCCAGC 1 cut(s) 170
PspN4I GGNNCC 1 cut(s) 54
PspPI GGNCC 1 cut(s) 115
PstNI CAGNNNCTG 1 cut(s) 65
PvuII CAGCTG 1 cut(s) 62
RsaI GTAC 1 cut(s) 268
RsaNI GTAC 1 cut(s) 267
RseI CAYNNNNRTG 1 cut(s) 123
SatI GCNGC 3 cut(s) 63, 195, 242
Sau96I GGNCC 1 cut(s) 115
SchI GAGTC 1 cut(s) 187
SduI GDGCHC 1 cut(s) 154
SetI ASST 5 cut(s) 64, 127, 209, 246, 262
SfcI CTRYAG 1 cut(s) 221
SinI GGWCC 1 cut(s) 115
SmiMI CAYNNNNRTG 1 cut(s) 123
SspMI CTAG 1 cut(s) 83
StyI CCWWGG 2 cut(s) 251, 289
TaiI ACGT 1 cut(s) 127
TatI WGTACW 1 cut(s) 266
TfiI GAWTC 1 cut(s) 137
TscAI CASTG 1 cut(s) 204
TseI GCWGC 3 cut(s) 62, 194, 241
TspDTI ATGAA 1 cut(s) 135
TspRI CASTG 1 cut(s) 204
VpaK11BI GGWCC 1 cut(s) 115
XspI CTAG 1 cut(s) 83
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.